Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0122781 Rosa chinensis HOM05D006516 ORTHO05D008083 5.9e-162 574.3 327 100.0
Prupe.4G278200 Prunus persica HOM05D006516 ORTHO05D008083 3.4e-125 452.2 346 75.4
MD00G1064700 Malus domestica HOM05D006516 ORTHO05D008083 5.0e-121 438.3 333 77.5
FAN26G1784 Fragaria x ananassa HOM05D006516 ORTHO05D008083 4.7e-119 431.8 333 80.8
FAN28G2638 Fragaria x ananassa HOM05D006516 ORTHO05D008083 5.2e-118 428.3 333 80.2
FAN19G1952 Fragaria x ananassa HOM05D006516 ORTHO05D008083 4.6e-114 415.2 339 74.0
Atru.chr4.1049 Acer truncatum HOM05D006516 ORTHO05D008083 1.3e-113 413.7 331 70.4
CANSAT01G0949 Cannabis sativa HOM05D006516 ORTHO05D008083 6.6e-113 411.4 338 68.3
FAN23G2617 Fragaria x ananassa HOM05D006516 ORTHO05D008083 6.2e-111 404.8 238 87.8
CiPaw.03G117200 Carya illinoinensis HOM05D006516 ORTHO05D008083 1.1e-110 404.1 347 67.7
Eucgr.I00111 Eucalyptus grandis HOM05D006516 ORTHO05D008083 3.7e-108 395.6 244 81.6
MELO3C023197.2 Cucumis melo HOM05D006516 ORTHO05D008083 6.4e-108 394.8 242 81.0
PGR119G1413 Punica granatum HOM05D006516 ORTHO05D008083 6.4e-108 394.8 332 69.9
Potri.007G099900 Populus trichocarpa HOM05D006516 ORTHO05D008083 1.4e-107 393.7 343 68.8
TAR628G0816 Trochodendron aralioides HOM05D006516 ORTHO05D008083 1.4e-107 393.7 236 83.5
Sabra07G0082800 Salix brachista HOM05D006516 ORTHO05D008083 3.2e-107 392.5 338 66.9
Dinv30343 Davidia involucrata HOM05D006516 ORTHO05D008083 4.1e-107 392.1 247 82.6
CsaV3_2G019760 Cucumis sativus L. HOM05D006516 ORTHO05D008083 2.1e-106 389.8 335 67.2
Solyc04g015480.3 Solanum lycopersicum HOM05D006516 ORTHO05D008083 4.6e-106 388.7 333 64.3
CSS0037144 Camellia sinensis var. sinensis HOM05D006516 ORTHO05D008083 6.0e-106 388.3 346 66.8
Sopen04g007550 Solanum pennellii HOM05D006516 ORTHO05D008083 6.0e-106 388.3 283 71.7
Thecc.01G139400 Theobroma cacao HOM05D006516 ORTHO05D008083 6.0e-106 388.3 335 68.4
Ciclev10001875m.g Citrus clementina HOM05D006516 ORTHO05D008083 1.0e-105 387.5 217 89.4
Manes.12G147400 Manihot esculenta HOM05D006516 ORTHO05D008083 1.5e-104 383.6 340 68.8
Cpa.g.sc37.17 Carica papaya HOM05D006516 ORTHO05D008083 3.3e-104 382.5 348 68.4
Sed0013830 Sechium edule HOM05D006516 ORTHO05D008083 5.6e-104 381.7 225 84.0
TWI31G0808 Tripterygium wilfordii HOM05D006516 ORTHO05D008083 5.6e-104 381.7 221 83.3
AT4G33480 Arabidopsis thaliana HOM05D006516 ORTHO05D008083 7.3e-104 381.3 334 62.3
BcaC09g52164 Brassica carinata HOM05D006516 ORTHO05D008083 7.3e-104 381.3 335 66.9
AL7G18070 Arabidopsis lyrata HOM05D006516 ORTHO05D008083 1.6e-103 380.2 338 66.3
Oeu011021.1 Olea europaea HOM05D006516 ORTHO05D008083 3.6e-103 379.0 225 83.1
Carub.0007s0699 Capsella rubella HOM05D006516 ORTHO05D008083 4.7e-103 378.6 335 65.7
THA.LOC104804401 Tarenaya hassleriana HOM05D006516 ORTHO05D008083 8.1e-103 377.9 247 76.9
CARHR241560 Cardamine hirsuta HOM05D006516 ORTHO05D008083 1.4e-102 377.1 336 67.0
Gohir.D04G033500 Gossypium hirsutum HOM05D006516 ORTHO05D008083 1.8e-102 376.7 341 66.9
C01p05200 Brassica napus HOM05D006516 ORTHO05D008083 4.0e-102 375.6 335 61.8
Gohir.A05G381800 Gossypium hirsutum HOM05D006516 ORTHO05D008083 5.2e-102 375.2 341 66.6
MSTRG.23495 Avicennia marina HOM05D006516 ORTHO05D008083 1.5e-101 373.6 225 81.3
QL10p040847 Quercus lobata HOM05D006516 ORTHO05D008083 3.4e-101 372.5 219 86.3
HanXRQChr15g0469261 Helianthus annuus HOM05D006516 ORTHO05D008083 2.2e-100 369.8 225 80.0
BraA01t00462Z Brassica rapa HOM05D006516 ORTHO05D008083 4.9e-100 368.6 229 79.0
A01p04790 Brassica napus HOM05D006516 ORTHO05D008083 1.9e-99 366.7 223 81.2
Sc06g0006730 Simmondsia chinensis HOM05D006516 ORTHO05D008083 2.4e-99 366.3 237 75.1
Lsat_1_v5_gn_5_69121 Lactuca sativa HOM05D006516 ORTHO05D008083 3.2e-99 365.9 218 81.7
Migut.H00817 Erythranthe guttata HOM05D006516 ORTHO05D008083 7.1e-99 364.8 225 80.4
AUR62000533 Chenopodium quinoa HOM05D006516 ORTHO05D008083 1.2e-98 364.0 242 73.6
EL10Ac4g09645 Beta vulgaris HOM05D006516 ORTHO05D008083 1.6e-98 363.6 231 74.0
FvH4_1g25120 Fragaria vesca HOM05D006516 ORTHO05D008083 2.1e-98 363.2 292 75.0
ECA233G3512 Erigeron canadensis HOM05D000595 ORTHO05D006275 2.7e-98 362.8 221 79.2
PSO170G3530 Papaver somniferum HOM05D006516 ORTHO05D008083 1.3e-97 360.5 234 76.9
Haze_25362 Corylus avellana HOM05D006516 ORTHO05D008083 7.3e-96 354.8 299 66.9
Aqoxy6G00267 Aquilegia oxysepala HOM05D006516 ORTHO05D008083 1.2e-95 354.0 235 72.8
CDE08G1595 Ceratophyllum demersum HOM05D006516 ORTHO05D008083 1.2e-95 354.0 218 75.7
BolC1t00500H Brassica oleracea HOM05D006516 ORTHO05D008021 4.7e-95 352.1 321 60.4
Cfa002190 Carpinus fangiana HOM05D006516 ORTHO05D008083 1.8e-94 350.1 424 52.8
Cc02_g33920 Coffea canephora HOM05D006516 ORTHO05D008083 1.8e-94 350.1 204 83.8
Nitab4.5_0001663g0100 Nicotiana tabacum HOM05D006516 ORTHO05D008083 3.1e-94 349.4 339 59.3
arahy.Tifrunner.gnm1.ann1.YP7URC Arachis hypogaea HOM05D006516 ORTHO05D008083 1.7e-92 343.6 345 58.6
Actinidia06588 Actinidia chinensis HOM05D006516 ORTHO05D008083 1.4e-91 340.5 214 81.3
DCAR_019988 Daucus carota HOM05D006516 ORTHO05D008083 1.2e-90 337.4 316 64.2
Lj4g0011477 Lotus japonicus HOM05D006516 ORTHO05D008083 1.2e-90 337.4 226 73.9
Glyma.05G194700 Glycine max HOM05D006516 ORTHO05D008083 2.1e-90 336.7 234 71.8
GSVIVG01022337001 Vitis vinifera HOM05D006516 ORTHO05D008083 2.1e-90 336.7 198 84.3
Actinidia20043 Actinidia chinensis HOM05D006516 ORTHO05D008083 3.5e-90 335.9 233 74.7
unitig_899.g15157 Utricularia gibba HOM05D006516 ORTHO05D008083 4.6e-90 335.5 210 74.8
SGA_v2.0_scaffold54G19604 Striga asiatica HOM05D006516 ORTHO05D008083 6.6e-89 331.6 211 73.9
PGSC0003DMG400027234 Solanum tuberosum HOM05D006516 ORTHO05D008083 1.1e-88 330.9 326 57.7
arahy.Tifrunner.gnm1.ann1.8KJ0MH Arachis hypogaea HOM05D006516 ORTHO05D008083 1.5e-88 330.5 331 57.7
Duzib147G1587 Durio zibethinus HOM05D006516 ORTHO05D008083 7.3e-88 328.2 210 80.5
Thhalv10025682m.g Eutrema salsugineum HOM05D006516 ORTHO05D008083 7.3e-88 328.2 297 66.3
CAN.G676.43 Capsicum annuum HOM05D006516 ORTHO05D008083 1.1e-86 324.3 218 75.7
Lalb_Chr13g0296721 Lupinus albus HOM05D006516 ORTHO05D008083 1.1e-86 324.3 232 69.0
PSO528G0185 Papaver somniferum HOM05D006516 ORTHO05D008083 1.5e-85 320.5 196 80.6
Gorai.012G037800 Gossypium raimondii HOM05D006516 ORTHO05D008083 2.0e-85 320.1 304 64.5
Hund07224 Selenicereus undatus HOM05D006516 ORTHO05D008083 9.9e-85 317.8 219 68.5
PSO063G7430 Papaver somniferum HOM05D006516 ORTHO05D008083 1.7e-84 317.0 196 80.1
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.9e-83 313.5 336 52.4
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 3.2e-83 312.8 186 79.6
Lalb_Chr08g0238111 Lupinus albus HOM05D006516 ORTHO05D008083 4.2e-83 312.4 216 71.8
Glyma.06G156800 Glycine max HOM05D006516 ORTHO05D008083 1.0e-81 307.8 216 74.1
Medtr8g094200 Medicago truncatula HOM05D006516 ORTHO05D008083 3.9e-81 305.8 250 60.4
Lj1g0010918 Lotus japonicus HOM05D006516 ORTHO05D008083 1.1e-80 304.3 213 73.2
AUR62006880 Chenopodium quinoa HOM05D006516 ORTHO05D008083 3.3e-80 302.8 318 51.9
COL.COLO4_12072 Corchorus olitorius HOM05D006516 ORTHO05D008083 5.6e-80 302.0 344 52.9
arahy.Tifrunner.gnm1.ann1.I5MJF2 Arachis hypogaea HOM05D006516 ORTHO05D008083 1.6e-79 300.4 215 68.4
Ca_17618_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.1e-78 297.7 202 69.3
VMungo1309G1214 Vigna mungo HOM05D006516 ORTHO05D008083 5.3e-78 295.4 216 70.4
Psat5g086920 Pisum sativum HOM05D006516 ORTHO05D008083 5.8e-77 292.0 218 67.0
Zm00001eb434490 Zea mays HOM05D006516 ORTHO05D008083 2.9e-76 289.7 219 63.9
arahy.Tifrunner.gnm1.ann1.5F6SWA Arachis hypogaea HOM05D006516 ORTHO05D008083 3.8e-76 289.3 229 64.6
TPR.G37339 Trifolium pratense HOM05D006516 ORTHO05D008083 4.6e-74 282.3 206 64.1
CiPaw.04G078600 Carya illinoinensis HOM05D006516 ORTHO05D008083 4.0e-70 269.2 339 53.1
Ca_16991_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 2.6e-69 266.5 273 54.9
Ca_17019_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 2.6e-69 266.5 273 54.9
Psat7g044240 Pisum sativum HOM05D006516 ORTHO05D008083 3.4e-69 266.2 226 58.0
Medtr3g096860 Medicago truncatula HOM05D006516 ORTHO05D008083 2.3e-65 253.4 202 62.9
Phvul.009G153500 Phaseolus vulgaris HOM05D006516 ORTHO05D008083 2.1e-63 246.9 179 69.8
ATR0138G020 Amborella trichopoda HOM05D006516 ORTHO05D008083 6.5e-60 235.3 158 69.6
TPR.G33574 Trifolium pratense HOM05D006516 ORTHO05D008083 4.2e-59 232.6 168 67.3
Peaxi162Scf01713g00018 Petunia axillaris HOM05D006516 ORTHO05D008083 3.0e-57 226.5 226 54.0
Sp7g31210 Schrenkiella parvula HOM05D006516 ORTHO05D008083 6.7e-57 225.3 251 59.4
Nn1g08886 Nelumbo nucifera HOM05D006516 ORTHO05D008083 3.3e-56 223.0 159 70.4
Nitab4.5_0000733g0220 Nicotiana tabacum HOM05D006516 ORTHO05D008083 3.3e-56 223.0 290 47.6
Mapoly0149s0016 Marchantia polymorpha HOM05D006516 ORTHO05D008083 5.7e-56 222.2 213 51.6
Aa31sc146G60 Aethionema arabicum HOM05D006516 ORTHO05D008083 9.7e-56 221.5 248 53.6
Pp3c3_32640 Physcomitrium patens HOM05D006516 ORTHO05D008083 4.5e-53 212.6 215 52.1
AagrBONN_evm.TU.Sc2ySwM_369.382 Anthoceros agrestis HOM05D006516 ORTHO05D008083 2.9e-52 209.9 231 49.8
ClCG02G000090 Citrullus lanatus HOM05D006516 ORTHO05D008083 2.5e-51 206.8 130 75.4
Rhsim10G0127700 Rhododendron simsii HOM05D006516 ORTHO05D008083 1.3e-47 194.5 192 53.1
MBI06_g45441_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 6.9e-46 188.7 233 48.9
Hma1.2p1_1551F.1_g290160 Hydrangea macrophylla HOM05D006516 ORTHO05D008083 2.6e-37 160.2 89 85.4
Aa31sc146G50 Aethionema arabicum HOM05D006516 ORTHO05D008083 3.5e-37 159.8 90 83.3
Nn1g08902 Nelumbo nucifera HOM05D006516 ORTHO05D008083 3.5e-37 159.8 90 84.4
CBR_g51961 Chara braunii HOM05D006516 ORTHO05D008083 1.2e-24 118.2 233 33.5
Peaxi162Scf01713g00017 Petunia axillaris HOM05D006516 ORTHO05D008083 2.6e-24 117.1 69 84.1
Nn1g08901 Nelumbo nucifera HOM05D003028 ORTHO05D003465 2.0e-21 107.5 154 42.2
Sp7g31200 Schrenkiella parvula HOM05D006516 ORTHO05D008083 1.0e-20 105.1 61 86.9
PRCOL_00004760 Prasinoderma coloniale HOM05D006516 ORTHO05D008083 5.0e-20 102.8 167 35.3
MCO05G028 Micromonas commoda HOM05D006516 ORTHO05D008083 3.0e-17 93.6 178 34.3
FAN28G1699 Fragaria x ananassa HOM05D006516 ORTHO05D008083 4.9e-15 86.3 48 95.8
COL.COLO4_30311 Corchorus olitorius HOM05D000221 ORTHO05D008083 3.5e-13 80.1 48 85.4
MBI06_g33106_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 2.5e-11 73.9 67 56.7
ATR0138G010 Amborella trichopoda HOM05D006516 ORTHO05D008083 1.4e-06 58.2 33 90.9


User provided reference genes

Program Settings