Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 3.4e-278 961.1 493 100.0
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.0e-246 855.5 495 88.9
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.3e-245 852.8 493 88.8
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.2e-244 846.7 493 88.4
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.2e-244 846.7 493 88.0
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-243 846.3 493 88.4
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 1.1e-215 753.4 505 76.2
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 7.6e-214 747.3 502 76.3
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 3.4e-198 695.3 498 70.9
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 5.5e-196 688.0 464 73.7
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.6e-195 686.4 485 70.9
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.7e-195 685.6 488 71.1
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 5.3e-191 671.4 494 68.6
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 5.3e-191 671.4 503 69.2
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.3e-189 666.8 489 68.5
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 1.3e-189 666.8 490 69.2
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.9e-189 665.6 465 72.0
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 5.0e-189 664.8 491 68.4
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.2e-187 660.2 479 68.9
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 6.1e-187 657.9 510 66.5
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 8.0e-187 657.5 478 69.9
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 8.0e-187 657.5 449 71.9
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.2e-186 654.8 475 69.9
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.2e-186 654.8 475 69.9
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.1e-185 653.7 490 67.1
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 1.1e-185 653.7 477 67.9
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.7e-185 651.4 472 70.8
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 7.4e-185 651.0 521 65.5
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 7.4e-185 651.0 467 69.0
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 9.7e-185 650.6 468 70.3
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 9.7e-185 650.6 488 67.8
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 2.2e-184 649.4 479 67.4
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.2e-184 649.4 472 71.0
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.1e-183 647.1 479 67.4
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.4e-183 646.7 499 66.5
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 1.2e-182 643.7 502 66.5
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 3.5e-182 642.1 490 67.1
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 4.5e-182 641.7 486 69.1
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 7.7e-182 641.0 490 65.3
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.0e-181 640.6 507 66.5
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 1.7e-181 639.8 492 67.9
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 2.2e-181 639.4 497 66.6
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.9e-181 639.0 471 69.0
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.9e-180 636.3 469 69.1
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 7.2e-180 634.4 502 65.7
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 4.7e-179 631.7 471 68.2
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 5.2e-178 628.2 474 67.9
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 6.7e-178 627.9 471 66.2
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 2.0e-177 626.3 472 65.7
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 1.3e-176 623.6 470 67.0
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 2.2e-176 622.9 488 63.1
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 3.7e-176 622.1 475 65.3
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 8.2e-176 620.9 501 62.9
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 8.2e-176 620.9 488 63.3
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 8.2e-176 620.9 472 66.7
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 1.8e-175 619.8 471 66.0
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 3.1e-175 619.0 447 68.0
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 9.1e-175 617.5 473 65.1
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 5.9e-174 614.8 462 67.3
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.0e-173 614.0 467 66.2
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.3e-173 613.6 484 64.3
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.7e-173 613.2 471 65.6
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 2.9e-173 612.5 460 66.3
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.2e-172 608.6 459 65.8
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 2.7e-171 605.9 471 63.5
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 4.7e-171 605.1 471 63.3
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.0e-170 604.0 490 61.8
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 2.3e-170 602.8 484 65.7
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 6.8e-170 601.3 476 62.8
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 6.8e-170 601.3 476 62.8
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 6.8e-170 601.3 471 63.1
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.5e-169 600.1 471 63.3
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 4.4e-169 598.6 473 62.8
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 5.7e-169 598.2 467 63.2
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 5.7e-169 598.2 492 61.2
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 7.5e-169 597.8 537 58.7
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 2.2e-168 596.3 465 63.7
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.2e-168 596.3 498 61.2
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 3.7e-168 595.5 502 60.6
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 3.7e-168 595.5 502 60.6
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.1e-167 592.4 481 62.8
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.6e-166 590.1 472 62.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.7e-166 589.3 516 59.3
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.9e-165 585.9 423 69.3
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.4e-162 577.0 437 64.5
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 4.1e-159 565.5 485 61.4
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 4.1e-159 565.5 495 58.6
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 4.3e-156 555.4 467 61.7
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.8e-154 550.1 556 55.6
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 2.5e-148 529.6 480 56.2
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 4.3e-148 528.9 377 68.7
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 7.3e-148 528.1 491 57.8
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.8e-147 526.2 482 58.3
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.8e-146 523.5 396 64.1
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.5e-145 520.4 396 63.9
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 8.3e-144 514.6 478 56.3
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 3.5e-142 509.2 469 55.7
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 8.6e-141 504.6 368 69.6
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.1e-138 497.7 481 55.9
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.6e-134 483.8 402 60.9
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 3.5e-134 482.6 490 54.7
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 9.2e-127 458.0 352 65.9
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 7.3e-124 448.4 457 52.1
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.2e-118 431.0 461 48.8
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 3.0e-109 399.8 266 73.3
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.9e-102 375.2 229 78.6
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 2.3e-93 347.1 290 63.4
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.9e-90 335.5 240 67.9
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.9e-90 335.5 240 67.9
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 8.5e-88 328.6 168 98.2
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.1e-87 328.2 200 77.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 2.5e-87 327.0 201 76.6
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 2.1e-86 323.9 267 62.5
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.9e-79 300.8 354 46.3
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 7.2e-79 298.9 337 46.9
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 1.5e-76 291.2 238 61.8
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 2.4e-74 283.9 324 45.7
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 6.5e-72 275.8 208 65.9
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 3.2e-71 273.5 213 64.3
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 1.6e-70 271.2 185 70.3
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.7e-70 269.6 220 62.7
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 3.3e-68 263.5 173 71.7
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 3.7e-67 260.0 178 70.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.7e-64 251.1 225 54.7
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.2e-64 250.8 206 60.7
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.6e-54 218.0 157 68.2
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 4.8e-51 206.5 162 61.7
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 7.0e-42 176.0 420 27.9
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.9e-40 170.6 143 59.4
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 3.5e-33 147.1 490 29.6
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.7e-32 144.8 136 54.4
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.6e-32 142.9 221 41.6
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-30 138.7 140 54.3
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 9.8e-28 129.0 142 47.2
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.6e-22 110.5 267 34.1
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.1e-22 109.4 98 51.0
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 1.3e-19 102.1 54 90.7
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 6.6e-16 89.7 61 72.1
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.5e-12 78.6 55 67.3
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 7.6e-12 76.3 184 31.0
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 8.4e-11 72.8 150 32.7
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-10 72.0 82 47.6
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 9.3e-10 69.3 75 50.7
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.0e-09 66.6 109 39.4
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 3.9e-08 63.9 49 67.3


User provided reference genes

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