Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0122171 Rosa chinensis HOM05D001418 ORTHO05D003753 3.4e-36 155.2 130 100.0
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 1.7e-19 99.8 53 81.1
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 1.7e-19 99.8 53 81.1
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 1.7e-19 99.8 53 81.1
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 2.6e-12 75.9 55 65.5
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 4.4e-12 75.1 55 63.6
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 7.6e-12 74.3 53 69.8
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 1.7e-11 73.2 55 61.8
Sed0004234 Sechium edule HOM05D001418 ORTHO05D003753 2.9e-11 72.4 55 60.0
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 3.2e-10 68.9 53 56.6
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 3.2e-10 68.9 55 65.5
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 5.4e-10 68.2 53 56.6
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 5.4e-10 68.2 55 52.7
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 5.4e-10 68.2 55 54.5
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 2.1e-09 66.2 55 56.4
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 2.7e-09 65.9 54 53.7
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 3.5e-09 65.5 53 52.8
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 3.5e-09 65.5 55 54.5
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 3.5e-09 65.5 55 54.5
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 3.5e-09 65.5 55 50.9
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 6.0e-09 64.7 55 52.7
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 6.0e-09 64.7 55 50.9
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 7.8e-09 64.3 53 56.6
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 1.3e-08 63.5 55 52.7
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 1.3e-08 63.5 55 49.1
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 1.3e-08 63.5 55 50.9
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 1.3e-08 63.5 55 45.5
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 1.7e-08 63.2 53 54.7
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 1.7e-08 63.2 55 49.1
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 2.3e-08 62.8 53 52.8
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 2.3e-08 62.8 53 50.9
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 2.3e-08 62.8 53 50.9
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 3.0e-08 62.4 55 56.4
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 3.9e-08 62.0 55 49.1
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 5.1e-08 61.6 53 54.7
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 8.7e-08 60.8 55 52.7
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 8.7e-08 60.8 51 49.0
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 1.1e-07 60.5 55 52.7
THA.LOC104804459 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 1.5e-07 60.1 53 49.1
THA.LOC104804402 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 1.9e-07 59.7 53 49.1
AL7G21370 Arabidopsis lyrata HOM05D001418 ORTHO05D003753 3.3e-07 58.9 53 50.9
AT4G30770 Arabidopsis thaliana HOM05D001418 ORTHO05D003753 3.3e-07 58.9 53 50.9
BcaNung04827 Brassica carinata HOM05D001418 ORTHO05D003753 4.3e-07 58.5 53 50.9
BcaNung01562 Brassica carinata HOM05D001418 ORTHO05D003753 7.3e-07 57.8 53 50.9
BcaNung02743 Brassica carinata HOM05D001418 ORTHO05D003753 7.3e-07 57.8 53 50.9
A03p60290 Brassica napus HOM05D001418 ORTHO05D003753 7.3e-07 57.8 53 50.9
C07p58200 Brassica napus HOM05D001418 ORTHO05D003753 7.3e-07 57.8 53 50.9
BolC7t46274H Brassica oleracea HOM05D001418 ORTHO05D002038 7.3e-07 57.8 53 50.9
BraA03t15071Z Brassica rapa HOM05D001418 ORTHO05D003753 7.3e-07 57.8 53 50.9
CARHR238610 Cardamine hirsuta HOM05D001418 ORTHO05D003753 7.3e-07 57.8 53 49.1
Thhalv10027257m.g Eutrema salsugineum HOM05D001418 ORTHO05D003753 7.3e-07 57.8 53 50.9
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 7.3e-07 57.8 55 47.3
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 7.3e-07 57.8 55 43.6
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 7.3e-07 57.8 55 41.8
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 7.3e-07 57.8 53 49.1
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 7.3e-07 57.8 53 49.1
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 7.3e-07 57.8 55 43.6
Carub.0007s0979 Capsella rubella HOM05D001418 ORTHO05D003753 9.6e-07 57.4 53 49.1
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 2.8e-06 55.8 53 49.1
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 3.6e-06 55.5 53 49.1
BcaC09g51866 Brassica carinata HOM05D001418 ORTHO05D003753 6.2e-06 54.7 53 49.1
A01p07400 Brassica napus HOM05D001418 ORTHO05D003753 6.2e-06 54.7 53 49.1
C01p08160 Brassica napus HOM05D001418 ORTHO05D003753 6.2e-06 54.7 53 49.1
BolC1t00803H Brassica oleracea HOM05D001418 ORTHO05D003753 6.2e-06 54.7 53 49.1
BraA01t00689Z Brassica rapa HOM05D001418 ORTHO05D003753 6.2e-06 54.7 53 49.1
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 6.2e-06 54.7 56 42.9
Sp7g28640 Schrenkiella parvula HOM05D001418 ORTHO05D003753 6.2e-06 54.7 53 49.1
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 6.2e-06 54.7 53 50.9


User provided reference genes

Program Settings