Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 0.0e+00 1088.6 565 100.0
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.7e-290 1000.3 571 91.6
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.8e-290 999.6 571 91.4
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.1e-288 994.6 568 91.9
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 3.8e-286 987.6 564 91.7
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.0e-283 977.6 571 90.0
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.1e-267 926.4 565 85.3
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 8.9e-259 896.7 565 83.4
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 9.0e-235 817.0 568 75.4
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 1.9e-229 799.3 565 74.3
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 4.3e-221 771.5 566 71.9
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 9.6e-221 770.4 564 69.9
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.8e-220 768.8 563 70.3
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 8.2e-220 767.3 566 71.4
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 9.0e-219 763.8 563 71.2
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.6e-218 762.3 563 70.0
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.3e-217 760.0 567 69.1
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.2e-217 759.2 563 70.0
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.2e-215 753.4 566 69.4
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.7e-215 752.3 566 69.4
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.9e-213 746.1 565 69.6
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 5.7e-213 744.6 568 69.5
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 1.1e-211 740.3 570 68.4
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.8e-211 739.6 563 69.4
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 3.1e-211 738.8 567 69.8
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 1.5e-210 736.5 564 71.1
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.0e-209 733.8 565 68.3
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 5.0e-209 731.5 564 68.1
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.1e-208 730.3 572 68.0
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 1.9e-208 729.6 565 68.1
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 7.2e-208 727.6 520 75.2
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 2.7e-207 725.7 566 69.4
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 6.1e-207 724.5 570 67.7
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 1.4e-206 723.4 565 68.3
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 8.8e-206 720.7 567 66.7
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 5.7e-205 718.0 565 67.4
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 9.7e-205 717.2 570 66.1
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 4.8e-204 714.9 603 65.3
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 4.8e-204 714.9 564 67.4
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 4.1e-203 711.8 574 64.8
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.9e-203 711.1 563 67.0
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 1.5e-202 709.9 568 67.8
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 5.0e-201 704.9 564 66.8
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 3.2e-200 702.2 570 66.3
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 1.6e-199 699.9 570 65.6
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.1e-199 699.5 499 71.1
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 1.8e-198 696.4 567 65.1
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 1.8e-198 696.4 567 65.1
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 3.0e-198 695.7 567 64.9
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.9e-198 695.3 565 65.5
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 8.8e-198 694.1 567 65.1
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 1.5e-197 693.3 566 65.4
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.5e-197 693.3 570 64.2
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 2.0e-197 693.0 567 64.9
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 3.3e-197 692.2 568 64.4
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 4.4e-197 691.8 585 65.3
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 9.7e-197 690.6 565 64.2
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.3e-196 690.3 567 63.5
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 1.7e-196 689.9 568 64.1
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 2.8e-196 689.1 568 64.6
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 3.7e-196 688.7 570 66.0
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 8.2e-196 687.6 566 64.1
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.1e-195 687.2 565 64.4
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.8e-195 686.4 564 64.5
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 2.0e-194 682.9 570 63.7
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 7.7e-194 681.0 565 63.7
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 1.0e-193 680.6 566 63.6
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 6.5e-193 677.9 568 63.9
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 8.5e-193 677.6 564 62.9
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 1.1e-192 677.2 564 63.5
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 1.9e-192 676.4 566 62.2
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 2.5e-192 676.0 590 61.5
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 2.5e-192 676.0 570 63.5
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 3.6e-191 672.2 578 61.8
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 6.1e-191 671.4 503 68.6
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 5.2e-190 668.3 565 62.5
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 9.7e-189 664.1 584 61.8
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 6.3e-188 661.4 573 61.3
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 2.4e-187 659.4 563 63.6
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 3.5e-186 655.6 564 62.2
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 8.5e-185 651.0 565 62.1
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 1.5e-184 650.2 594 60.3
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 8.8e-182 641.0 569 61.0
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 2.2e-180 636.3 654 56.7
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 2.4e-179 632.9 584 59.1
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 3.1e-179 632.5 469 70.6
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 5.5e-176 621.7 473 68.5
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 7.2e-176 621.3 582 58.2
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 7.2e-176 621.3 604 57.8
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 3.0e-174 615.9 569 60.1
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 6.8e-174 614.8 463 67.4
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 3.4e-173 612.5 570 59.3
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 6.3e-172 608.2 504 64.7
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 2.7e-170 602.8 570 58.4
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 3.0e-166 589.3 484 64.9
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 7.5e-165 584.7 503 61.6
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 9.8e-165 584.3 504 64.1
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 2.9e-164 582.8 551 59.5
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 2.0e-157 560.1 566 54.2
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 5.4e-155 552.0 567 56.3
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 4.9e-148 528.9 565 54.9
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 8.3e-148 528.1 569 51.1
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 6.2e-143 511.9 535 52.0
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 8.1e-143 511.5 349 73.4
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 6.8e-142 508.4 512 52.9
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 3.2e-139 499.6 476 56.9
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 9.2e-139 498.0 585 51.8
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 6.0e-138 495.4 349 72.2
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 8.4e-132 474.9 340 68.8
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 2.1e-130 470.3 403 62.3
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 1.7e-129 467.2 394 66.8
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 3.4e-125 453.0 524 50.0
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 1.4e-118 431.0 483 51.1
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.2e-117 427.9 411 58.6
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 7.6e-117 425.2 357 62.7
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.8e-111 406.8 243 84.4
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 2.0e-109 400.6 242 80.6
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 2.0e-109 400.6 242 80.6
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 4.9e-108 396.0 394 56.9
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 9.0e-102 375.2 234 77.4
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 9.3e-99 365.2 305 63.0
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.1e-96 358.2 281 63.3
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 2.2e-95 354.0 427 50.4
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.9e-92 343.6 192 87.0
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.2e-90 338.2 413 51.8
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 1.4e-86 324.7 570 38.1
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.1e-86 323.2 332 53.3
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 2.0e-85 320.9 460 45.9
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.7e-80 302.8 376 49.5
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 7.0e-78 295.8 577 36.7
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 1.0e-76 292.0 159 88.1
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 1.6e-61 241.5 143 82.5
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.0e-60 238.8 143 84.6
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.9e-59 234.6 143 82.5
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.2e-59 232.6 128 94.5
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 9.5e-59 232.3 198 63.6
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 1.2e-56 225.3 134 83.6
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.4e-54 216.5 122 91.0
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-52 209.9 556 30.9
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 1.2e-50 205.3 236 51.7
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 1.1e-43 182.2 499 30.9
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.8e-41 172.9 161 59.0
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.2e-38 162.5 88 94.3
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.5e-35 152.5 93 83.9
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.9e-27 128.3 179 45.3
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 1.6e-26 125.2 419 29.4
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 7.6e-24 116.3 86 76.7
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 6.4e-23 113.2 205 39.5
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 1.4e-22 112.1 132 50.0
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 9.2e-22 109.4 258 30.2
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 5.6e-19 100.1 259 30.9
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.3e-19 99.8 52 96.2
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 7.1e-14 83.2 45 82.2
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.1e-06 59.3 199 26.6
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 5.4e-06 57.0 32 87.5


User provided reference genes

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