Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 4.2e-245 850.9 418 100.0
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 4.4e-239 830.9 418 97.6
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 9.6e-234 813.1 418 95.2
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.8e-231 803.9 434 91.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 9.9e-231 803.1 418 93.8
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.9e-230 800.8 434 91.5
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.5e-228 794.7 434 91.0
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 3.0e-219 765.0 418 88.8
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.2e-215 753.1 418 87.1
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.7e-214 749.2 418 86.8
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.1e-204 714.1 417 81.5
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 5.1e-203 711.1 362 94.5
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 6.7e-203 710.7 418 82.8
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.0e-202 709.1 417 81.5
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.0e-202 709.1 417 81.8
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 3.3e-202 708.4 418 81.1
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 3.3e-202 708.4 418 81.3
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.7e-201 706.1 417 81.3
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.8e-201 705.3 417 81.3
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 6.3e-201 704.1 419 80.7
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.3e-201 704.1 418 80.4
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 8.2e-201 703.7 419 80.2
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 2.4e-200 702.2 418 82.3
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 5.3e-200 701.0 414 80.4
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 5.3e-200 701.0 419 80.7
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 9.1e-200 700.3 418 81.3
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.2e-199 699.9 416 79.6
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.5e-199 699.5 418 79.7
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 2.0e-199 699.1 417 81.1
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 2.0e-199 699.1 418 80.4
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 2.6e-199 698.7 416 79.3
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 3.4e-199 698.4 418 80.1
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 4.5e-199 698.0 416 79.1
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 7.7e-199 697.2 418 79.4
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 7.7e-199 697.2 418 78.7
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 7.7e-199 697.2 418 79.9
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.3e-198 696.4 416 79.1
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.7e-198 696.0 417 79.6
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.7e-198 696.0 440 76.6
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.7e-198 696.0 417 79.6
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.7e-198 696.0 414 80.0
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-198 695.7 418 79.2
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 2.2e-198 695.7 439 78.4
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.2e-198 695.7 417 78.9
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 3.8e-198 694.9 416 79.1
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 6.5e-198 694.1 416 79.1
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 6.5e-198 694.1 417 79.6
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 6.5e-198 694.1 416 79.3
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.4e-197 693.0 419 79.2
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.4e-197 693.0 416 80.0
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.4e-197 693.0 419 79.5
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.9e-197 692.6 416 79.3
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 2.5e-197 692.2 416 79.1
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 2.5e-197 692.2 415 79.5
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 3.2e-197 691.8 418 79.4
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.2e-197 691.4 419 79.0
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 5.5e-197 691.0 416 78.6
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 5.5e-197 691.0 414 79.5
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 9.4e-197 690.3 419 79.0
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 9.4e-197 690.3 419 79.0
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.6e-196 689.5 415 79.3
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.6e-196 689.5 416 77.9
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 2.1e-196 689.1 416 78.1
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 2.7e-196 688.7 414 78.7
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 3.6e-196 688.3 417 78.7
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 7.9e-196 687.2 417 79.1
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.0e-195 686.8 416 78.8
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.4e-195 686.4 419 78.3
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 2.3e-195 685.6 417 78.2
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 3.0e-195 685.3 416 79.8
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.0e-195 685.3 416 77.9
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.9e-195 684.9 418 79.2
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 6.7e-195 684.1 416 77.9
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 6.7e-195 684.1 416 78.1
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 6.7e-195 684.1 419 78.5
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 6.7e-195 684.1 418 78.5
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.1e-194 683.3 417 78.2
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.1e-194 683.3 418 78.5
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 2.6e-194 682.2 421 78.9
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.3e-194 681.8 434 77.0
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.4e-194 681.4 416 78.4
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 4.4e-194 681.4 419 77.3
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 5.7e-194 681.0 414 77.8
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 7.4e-194 680.6 415 78.3
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 7.4e-194 680.6 435 76.6
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.3e-193 679.9 419 76.8
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 2.8e-193 678.7 418 78.5
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 6.3e-193 677.6 416 79.1
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 4.1e-192 674.9 418 77.0
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 5.3e-192 674.5 417 78.4
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 5.3e-192 674.5 412 77.2
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-191 673.3 416 76.9
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 1.6e-191 672.9 412 78.4
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.0e-191 672.5 417 77.0
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.0e-191 672.5 418 78.0
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.7e-190 669.5 416 77.4
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 5.0e-190 667.9 416 75.5
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.0e-190 667.9 431 75.6
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.5e-189 665.6 416 75.5
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.2e-189 665.2 418 76.8
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 3.2e-189 665.2 415 75.2
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 9.4e-189 663.7 416 76.0
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 9.4e-189 663.7 406 80.5
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 4.0e-187 658.3 417 75.3
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 4.0e-187 658.3 416 75.0
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 8.8e-187 657.1 416 76.2
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.5e-186 656.4 449 71.5
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.7e-185 652.9 416 75.5
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.0e-182 643.7 417 76.3
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 2.2e-182 642.5 415 73.7
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.2e-182 642.5 410 74.1
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 3.8e-182 641.7 457 69.1
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 8.5e-182 640.6 413 73.8
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.1e-181 640.2 414 72.5
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 5.5e-181 637.9 421 72.9
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.0e-179 633.6 413 73.1
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.0e-179 633.6 412 73.3
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.8e-179 632.9 412 73.5
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.3e-179 632.5 411 73.0
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.2e-179 631.3 360 83.1
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.2e-178 630.2 416 72.8
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 7.5e-178 627.5 417 71.7
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 2.4e-176 622.5 412 71.4
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 4.1e-176 621.7 417 72.7
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 2.0e-175 619.4 420 70.7
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 2.0e-175 619.4 417 73.6
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.7e-175 619.0 411 73.0
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 3.2e-173 612.1 498 62.0
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 7.2e-173 610.9 371 78.7
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 9.5e-173 610.5 415 72.3
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 9.5e-173 610.5 421 67.7
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.8e-168 596.3 361 77.8
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.1e-168 595.1 413 68.8
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 9.2e-160 567.4 341 78.6
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.6e-159 566.6 341 78.9
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 3.6e-156 555.4 413 62.7
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 6.8e-155 551.2 415 61.0
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 7.3e-149 531.2 434 63.6
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 2.0e-146 523.1 410 60.5
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.6e-143 513.5 413 62.5
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 6.0e-143 511.5 411 58.6
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 7.6e-138 494.6 426 55.6
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.3e-137 493.8 291 81.8
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.2e-130 470.7 342 66.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.6e-125 451.8 315 70.8
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 5.8e-122 441.8 302 74.2
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 2.2e-113 413.3 223 86.1
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.1e-111 406.8 291 68.4
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 2.6e-106 389.8 414 47.3
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.6e-103 380.6 498 41.0
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.1e-99 367.9 403 47.9
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.8e-99 367.1 426 46.0
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-98 364.4 235 74.5
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.7e-97 360.5 244 69.3
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.7e-93 344.7 198 81.3
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.4e-91 340.9 198 80.3
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 3.1e-75 286.6 230 64.8
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 8.5e-73 278.5 221 62.9
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.2e-64 249.6 162 75.3
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.7e-63 246.9 258 53.1
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.0e-61 240.7 174 64.9
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 9.8e-61 238.4 151 75.5
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 3.5e-58 229.9 179 65.9
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 3.3e-56 223.4 229 52.8
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 4.2e-56 223.0 155 68.4
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.2e-53 214.9 124 79.0
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.3e-52 209.1 181 58.6
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.5e-50 203.0 337 38.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.7e-49 201.1 128 75.8
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 7.3e-48 195.7 121 72.7
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.3e-46 190.7 343 38.2
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.6e-42 177.9 127 68.5
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 8.3e-36 155.6 122 62.3
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 5.0e-33 146.4 95 72.6
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.2e-29 135.2 88 73.9
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 8.3e-28 129.0 126 56.3
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 3.2e-27 127.1 66 84.8
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 4.6e-26 123.2 71 80.3
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 9.9e-13 79.0 57 66.7
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 4.9e-12 76.6 87 42.5
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 8.4e-12 75.9 105 37.1
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.7e-10 70.9 59 66.1
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 9.6e-08 62.4 42 69.0
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 1.3e-07 62.0 303 22.8
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.3e-07 62.0 35 77.1


User provided reference genes

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