Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 5.9e-135 484.2 242 100.0
RcHm_v2.0_Chr4g0396211 Rosa chinensis HOM05D009478 ORTHO05D010213 8.4e-81 304.3 178 88.2
FAN02G4237 Fragaria x ananassa HOM05D009478 ORTHO05D010213 2.4e-51 206.5 175 65.1
FAN01G2716 Fragaria x ananassa HOM05D009478 ORTHO05D010213 5.9e-50 201.8 175 62.9
FAN23G2567 Fragaria x ananassa HOM05D009478 ORTHO05D010213 3.8e-49 199.1 174 62.6
FAN23G0896 Fragaria x ananassa HOM05D009478 ORTHO05D010213 2.7e-47 193.0 172 59.9
FAN01G2101 Fragaria x ananassa HOM05D009478 ORTHO05D010213 3.9e-46 189.1 172 59.3
FAN19G2687 Fragaria x ananassa HOM05D009478 ORTHO05D010213 3.1e-43 179.5 153 64.1
FAN13G2842 Fragaria x ananassa HOM05D009478 ORTHO05D010213 1.7e-28 130.6 159 50.3
FvH4_6g25711 Fragaria vesca HOM05D009478 ORTHO05D010213 4.5e-26 122.5 118 54.2
RcHm_v2.0_Chr7g0189591 Rosa chinensis HOM05D009478 ORTHO05D010213 3.0e-22 109.8 158 39.9
RcHm_v2.0_Chr6g0268141 Rosa chinensis HOM05D009478 ORTHO05D010213 5.2e-22 109.0 158 39.9
FAN09G0089 Fragaria x ananassa HOM05D009478 ORTHO05D010213 4.4e-21 105.9 175 43.4
RcHm_v2.0_Chr4g0432021 Rosa chinensis HOM05D009478 ORTHO05D010213 1.1e-19 101.3 158 38.0
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.8e-17 92.8 45 91.1
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 9.4e-16 88.2 42 92.9
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 1.6e-15 87.4 42 90.5
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-15 87.4 42 90.5
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-15 87.4 42 90.5
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.4e-14 84.3 42 88.1
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 4.4e-13 79.3 81 53.1
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 8.3e-12 75.1 69 55.1
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.1e-11 74.7 42 71.4
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-11 74.7 48 68.8
FAN09G2654 Fragaria x ananassa HOM05D009478 ORTHO05D010213 1.8e-11 73.9 175 34.9
FvH4_7g08580 Fragaria vesca HOM05D021144 ORTHO05D022601 3.1e-11 73.2 122 37.7
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 5.4e-11 72.4 44 72.7
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 9.2e-11 71.6 42 71.4
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 1.2e-10 71.2 48 66.7
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.6e-10 70.9 42 69.0
FAN11G2095 Fragaria x ananassa HOM05D021144 ORTHO05D022601 1.6e-10 70.9 122 36.9
FAN20G1793 Fragaria x ananassa HOM05D021144 ORTHO05D022601 1.6e-10 70.9 122 36.9
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 2.0e-10 70.5 41 73.2
FvH4_7g07131 Fragaria vesca HOM05D021144 ORTHO05D022601 2.7e-10 70.1 122 36.9
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.5e-10 69.7 41 73.2
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.5e-10 69.7 41 73.2
FvH4_1g27812 Fragaria vesca HOM05D009478 ORTHO05D010213 5.9e-10 68.9 61 57.4
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 5.9e-10 68.9 43 69.8
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.9e-10 68.9 41 73.2
FvH4_6g25720 Fragaria vesca HOM05D009478 ORTHO05D010213 7.7e-10 68.6 61 57.4
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.3e-09 67.8 42 66.7
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.7e-09 67.4 44 61.4
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.3e-09 67.0 45 66.7
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 2.3e-09 67.0 43 65.1
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 2.9e-09 66.6 42 64.3
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.9e-09 66.6 40 75.0
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 3.8e-09 66.2 43 60.5
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.0e-09 65.9 41 65.9
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.0e-09 65.9 41 65.9
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 6.6e-09 65.5 42 64.3
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 6.6e-09 65.5 47 61.7
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 6.6e-09 65.5 41 68.3
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 8.6e-09 65.1 40 70.0
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.1e-08 64.7 43 60.5
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 1.1e-08 64.7 42 66.7
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.5e-08 64.3 40 70.0
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 1.9e-08 63.9 40 65.0
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.5e-08 63.5 46 56.5
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.5e-08 63.5 42 64.3
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.5e-08 63.5 45 62.2
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 2.5e-08 63.5 38 71.1
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 3.3e-08 63.2 43 60.5
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 5.6e-08 62.4 57 54.4
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 7.3e-08 62.0 44 61.4
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 7.3e-08 62.0 40 65.0
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 7.3e-08 62.0 68 47.1
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 9.5e-08 61.6 41 63.4
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 9.5e-08 61.6 42 61.9
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.2e-07 61.2 41 63.4
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.2e-07 61.2 41 63.4
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.2e-07 61.2 41 61.0
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.2e-07 61.2 41 63.4
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.2e-07 61.2 39 66.7
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.2e-07 61.2 62 50.0
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.2e-07 61.2 40 65.0
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.6e-07 60.8 41 61.0
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.6e-07 60.8 41 63.4
FAN05G0506 Fragaria x ananassa HOM05D009478 ORTHO05D010213 1.6e-07 60.8 61 52.5
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.1e-07 60.5 39 66.7
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.1e-07 60.5 44 59.1
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 2.8e-07 60.1 45 57.8
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 3.6e-07 59.7 42 64.3
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 3.6e-07 59.7 38 65.8
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 4.7e-07 59.3 41 58.5
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.7e-07 59.3 41 61.0
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.7e-07 59.3 41 61.0
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 4.7e-07 59.3 42 59.5
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 4.7e-07 59.3 48 54.2
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.7e-07 59.3 40 67.5
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 6.1e-07 58.9 42 59.5
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 6.1e-07 58.9 42 57.1
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 6.1e-07 58.9 39 64.1
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 6.1e-07 58.9 43 60.5
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 6.1e-07 58.9 43 62.8
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 8.0e-07 58.5 38 63.2
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 8.0e-07 58.5 41 61.0
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 8.0e-07 58.5 44 56.8
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 8.0e-07 58.5 48 54.2
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.0e-06 58.2 41 58.5
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 1.0e-06 58.2 40 62.5
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.4e-06 57.8 42 57.1
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.4e-06 57.8 42 59.5
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.4e-06 57.8 42 57.1
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.4e-06 57.8 42 57.1
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.4e-06 57.8 44 56.8
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.8e-06 57.4 38 60.5
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.8e-06 57.4 41 58.5
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.8e-06 57.4 41 61.0
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.3e-06 57.0 38 60.5
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 4.0e-06 56.2 41 61.0
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 4.0e-06 56.2 41 56.1
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 5.2e-06 55.8 37 64.9
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 6.8e-06 55.5 42 54.8
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.8e-06 55.5 39 59.0
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 8.9e-06 55.1 36 63.9
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 8.9e-06 55.1 41 53.7
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 8.9e-06 55.1 43 53.5
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 8.9e-06 55.1 43 53.5
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 8.9e-06 55.1 43 53.5
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 8.9e-06 55.1 43 53.5
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 8.9e-06 55.1 43 55.8
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 8.9e-06 55.1 42 54.8


User provided reference genes

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