Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 6.7e-50 200.3 95 100.0
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 1.0e-45 186.4 95 92.6
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.0e-45 186.4 95 92.6
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.2e-45 185.3 95 91.6
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.9e-45 184.9 95 91.6
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 5.0e-21 104.4 95 62.1
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.1e-20 103.2 90 62.2
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.1e-20 103.2 95 60.0
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.1e-20 103.2 78 66.7
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.5e-20 100.9 95 56.8
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.5e-20 100.9 95 56.8
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 9.4e-20 100.1 95 56.8
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 1.0e-18 96.7 95 58.9
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 3.0e-18 95.1 95 52.6
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 4.0e-18 94.7 95 60.0
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 7.5e-17 90.5 96 57.3
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 2.8e-16 88.6 95 48.4
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 6.3e-16 87.4 96 50.0
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.4e-15 86.3 84 52.4
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.4e-15 86.3 95 50.5
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.8e-15 85.9 89 58.4
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.1e-15 85.1 84 52.4
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.1e-15 85.1 84 52.4
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 4.1e-15 84.7 93 50.5
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.1e-15 83.6 95 49.5
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 9.1e-15 83.6 95 49.5
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 9.1e-15 83.6 95 50.5
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 2.0e-14 82.4 48 77.1
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.7e-14 82.0 77 54.5
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.3e-13 79.7 95 50.5
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 1.7e-13 79.3 46 78.3
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 1.7e-13 79.3 95 49.5
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 5.0e-13 77.8 83 55.4
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 6.5e-13 77.4 95 46.3
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 6.5e-13 77.4 82 51.2
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 8.6e-13 77.0 76 52.6
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 2.5e-12 75.5 64 59.4
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.2e-12 74.7 95 47.4
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 7.2e-12 73.9 84 48.8
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.2e-11 73.2 64 57.8
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 1.6e-11 72.8 47 68.1
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 2.1e-11 72.4 84 50.0
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 4.7e-11 71.2 83 47.0
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 1.0e-10 70.1 97 46.4
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 5.2e-10 67.8 94 44.7
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 5.2e-10 67.8 47 66.0
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 3.4e-09 65.1 95 43.2
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 3.4e-09 65.1 91 42.9
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 4.4e-09 64.7 75 44.0
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 9.8e-09 63.5 82 43.9
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.3e-08 63.2 40 70.0
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 1.3e-08 63.2 41 65.9
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.3e-08 63.2 40 70.0
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-08 62.8 40 70.0
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-08 62.8 95 42.1
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 1.7e-08 62.8 95 42.1
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 1.7e-08 62.8 91 40.7
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.7e-08 62.8 89 42.7
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.7e-08 62.8 81 42.0
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 2.2e-08 62.4 79 40.5
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 3.7e-08 61.6 80 42.5
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.7e-08 61.6 91 39.6
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 4.9e-08 61.2 79 44.3
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 4.9e-08 61.2 96 41.7
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 4.9e-08 61.2 79 44.3
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 4.9e-08 61.2 79 44.3
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 4.9e-08 61.2 96 41.7
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.9e-08 61.2 80 46.2
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 4.9e-08 61.2 64 50.0
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 6.3e-08 60.8 95 36.8
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 6.3e-08 60.8 50 50.0
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 8.3e-08 60.5 82 47.6
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 8.3e-08 60.5 91 37.4
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 8.3e-08 60.5 82 47.6
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 8.3e-08 60.5 82 47.6
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 8.3e-08 60.5 91 37.4
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 8.3e-08 60.5 79 39.2
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.1e-07 60.1 94 40.4
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.4e-07 59.7 34 73.5
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.4e-07 59.7 91 40.7
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.8e-07 59.3 83 42.2
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 2.4e-07 58.9 82 42.7
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 2.4e-07 58.9 82 42.7
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 3.1e-07 58.5 56 53.6
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 4.1e-07 58.2 34 70.6
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 4.1e-07 58.2 82 36.6
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 5.4e-07 57.8 55 50.9
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 7.0e-07 57.4 56 53.6
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 7.0e-07 57.4 90 46.7
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 7.0e-07 57.4 96 38.5
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 9.2e-07 57.0 80 40.0
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.2e-06 56.6 97 37.1
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.2e-06 56.6 79 41.8
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-06 56.2 74 41.9
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-06 56.2 82 42.7
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-06 56.2 74 41.9
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-06 56.2 82 42.7
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-06 56.2 74 41.9
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-06 56.2 74 41.9
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.6e-06 56.2 74 41.9
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.6e-06 56.2 74 41.9
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 1.6e-06 56.2 68 42.6
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.0e-06 55.8 80 36.2
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.0e-06 55.8 83 42.2
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.0e-06 55.8 76 43.4
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 2.7e-06 55.5 93 36.6
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 2.7e-06 55.5 75 45.3
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 2.7e-06 55.5 74 40.5
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 3.5e-06 55.1 64 43.8
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 4.5e-06 54.7 78 38.5
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 5.9e-06 54.3 66 42.4
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 5.9e-06 54.3 66 42.4
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 5.9e-06 54.3 66 42.4
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 5.9e-06 54.3 71 43.7
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 5.9e-06 54.3 77 42.9
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 7.8e-06 53.9 96 37.5
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 7.8e-06 53.9 96 37.5


User provided reference genes

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