Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0119491 Rosa chinensis HOM05D002957 ORTHO05D007941 4.9e-70 267.7 135 100.0
RcHm_v2.0_Chr1g0313851 Rosa chinensis HOM05D002957 ORTHO05D007941 4.9e-54 214.5 102 99.0
RcHm_v2.0_Chr7g0192141 Rosa chinensis HOM05D002957 ORTHO05D007941 4.9e-46 188.0 107 86.0
FvH4_5g06601 Fragaria vesca HOM05D002957 ORTHO05D007941 3.2e-45 185.3 107 84.1
FAN18G4082 Fragaria x ananassa HOM05D000025 ORTHO05D007941 3.2e-45 185.3 107 84.1
FAN08G0527 Fragaria x ananassa HOM05D002957 ORTHO05D007941 7.8e-44 180.6 107 82.2
Prupe.5G163400 Prunus persica HOM05D002957 ORTHO05D007941 1.1e-40 170.2 107 75.7
MD06G1224500 Malus domestica HOM05D002957 ORTHO05D007941 2.0e-39 166.0 107 73.8
Cfa019259 Carpinus fangiana HOM05D002957 ORTHO05D007941 3.4e-39 165.2 107 74.8
Atru.chr9.2618 Acer truncatum HOM05D002957 ORTHO05D007941 4.4e-39 164.9 108 74.1
Duzib084G0342 Durio zibethinus HOM05D002957 ORTHO05D007941 5.8e-39 164.5 108 72.2
QL10p006228 Quercus lobata HOM05D002957 ORTHO05D007941 1.7e-38 162.9 107 72.0
QL03p060389 Quercus lobata HOM05D002957 ORTHO05D007941 2.2e-38 162.5 108 71.3
Gohir.D12G188700 Gossypium hirsutum HOM05D002957 ORTHO05D007941 4.1e-37 158.3 107 72.0
Gorai.008G202600 Gossypium raimondii HOM05D002957 ORTHO05D007941 4.1e-37 158.3 107 72.0
Gohir.A12G185900 Gossypium hirsutum HOM05D002957 ORTHO05D007941 5.4e-37 157.9 107 72.0
ClCG06G017470 Citrullus lanatus HOM05D002957 ORTHO05D007941 1.2e-36 156.8 107 70.1
MELO3C026250.2 Cucumis melo HOM05D002957 ORTHO05D007941 2.1e-36 156.0 107 69.2
CsaV3_1G000990 Cucumis sativus L. HOM05D002957 ORTHO05D007941 2.7e-36 155.6 107 68.2
Sabra15G0109000 Salix brachista HOM05D002957 ORTHO05D007941 2.7e-36 155.6 108 69.4
Potri.015G086100 Populus trichocarpa HOM05D002957 ORTHO05D007941 3.5e-36 155.2 108 69.4
Actinidia36761 Actinidia chinensis HOM05D002957 ORTHO05D007941 7.8e-36 154.1 107 70.1
Ciclev10021427m.g Citrus clementina HOM05D002957 ORTHO05D007941 7.8e-36 154.1 108 67.6
PGR083G0505 Punica granatum HOM05D002957 ORTHO05D007941 7.8e-36 154.1 108 67.6
Ah.08g218480 Amaranthus hybridus HOM05D002957 ORTHO05D007941 1.0e-35 153.7 107 67.3
Thecc.03G117300 Theobroma cacao HOM05D002957 ORTHO05D007941 1.0e-35 153.7 108 66.7
GSVIVG01007604001 Vitis vinifera HOM05D002957 ORTHO05D007941 1.0e-35 153.7 107 69.2
DCAR_026193 Daucus carota HOM05D002957 ORTHO05D007941 1.3e-35 153.3 107 66.4
Glyma.06G175800 Glycine max HOM05D002957 ORTHO05D007941 1.3e-35 153.3 107 68.2
Manes.06G111900 Manihot esculenta HOM05D002957 ORTHO05D007941 1.3e-35 153.3 107 66.4
CANSAT80G1905 Cannabis sativa HOM05D002957 ORTHO05D007941 1.7e-35 152.9 107 67.3
CiPaw.11G016500 Carya illinoinensis HOM05D002957 ORTHO05D007941 1.7e-35 152.9 107 68.2
AUR62022097 Chenopodium quinoa HOM05D002957 ORTHO05D007941 1.7e-35 152.9 107 67.3
Oeu063270.2 Olea europaea HOM05D002957 ORTHO05D007941 2.3e-35 152.5 108 67.6
EL10Ac7g18022 Beta vulgaris HOM05D002957 ORTHO05D007941 3.9e-35 151.8 107 67.3
SalBow5G1405 Salvia bowleyana HOM05D002957 ORTHO05D007941 3.9e-35 151.8 108 68.5
arahy.Tifrunner.gnm1.ann1.0G1QRI Arachis hypogaea HOM05D002957 ORTHO05D007941 5.1e-35 151.4 107 65.4
Lsat_1_v5_gn_1_28561 Lactuca sativa HOM05D002957 ORTHO05D007941 6.6e-35 151.0 107 66.4
Psat5g117640 Pisum sativum HOM05D002957 ORTHO05D007941 8.6e-35 150.6 107 65.4
TPR.G35599 Trifolium pratense HOM05D002957 ORTHO05D007941 8.6e-35 150.6 107 66.4
Lj1g0012275 Lotus japonicus HOM05D002957 ORTHO05D007941 1.1e-34 150.2 106 67.9
vmacro22887 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.5e-34 149.8 107 65.4
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.5e-34 149.8 107 65.4
CSS0023443 Camellia sinensis var. sinensis HOM05D002957 ORTHO05D007941 1.9e-34 149.4 107 65.4
CSS0001501 Camellia sinensis var. sinensis HOM05D002957 ORTHO05D007941 2.5e-34 149.1 107 66.4
Sed0027100 Sechium edule HOM05D002957 ORTHO05D007941 2.5e-34 149.1 107 65.4
Dinv38506 Davidia involucrata HOM05D002957 ORTHO05D007941 3.3e-34 148.7 112 64.3
Lj1g0016898 Lotus japonicus HOM05D002957 ORTHO05D007941 3.3e-34 148.7 106 67.0
Hma1.2p1_1092F.1_g255870 Hydrangea macrophylla HOM05D002957 ORTHO05D007941 4.3e-34 148.3 108 64.8
Hma1.2p1_1092F.1_g255880 Hydrangea macrophylla HOM05D002957 ORTHO05D007941 4.3e-34 148.3 108 64.8
HanXRQChr02g0035391 Helianthus annuus HOM05D002957 ORTHO05D007941 5.6e-34 147.9 111 64.0
Phvul.009G171900 Phaseolus vulgaris HOM05D002957 ORTHO05D007941 5.6e-34 147.9 107 64.5
Lj5A132G82 Lonicera japonica HOM05D002957 ORTHO05D007941 7.3e-34 147.5 107 64.5
Lalb_Chr11g0069861 Lupinus albus HOM05D002957 ORTHO05D007941 7.3e-34 147.5 107 64.5
RcHm_v2.0_Chr3g0475211 Rosa chinensis HOM05D002957 ORTHO05D007941 7.3e-34 147.5 102 72.5
Eucgr.B00193 Eucalyptus grandis HOM05D002957 ORTHO05D007941 9.6e-34 147.1 108 64.8
Thhalv10025885m.g Eutrema salsugineum HOM05D002957 ORTHO05D007941 9.6e-34 147.1 108 64.8
Medtr3g075540 Medicago truncatula HOM05D002957 ORTHO05D007941 9.6e-34 147.1 108 66.7
VMungo1309G1657 Vigna mungo HOM05D002957 ORTHO05D007941 9.6e-34 147.1 107 64.5
Migut.O00181 Erythranthe guttata HOM05D002957 ORTHO05D007941 1.2e-33 146.7 105 64.8
AL7G28440 Arabidopsis lyrata HOM05D002957 ORTHO05D007941 2.8e-33 145.6 108 63.9
ECA247G2183 Erigeron canadensis HOM05D002957 ORTHO05D007941 2.8e-33 145.6 111 63.1
Nitab4.5_0000025g0240 Nicotiana tabacum HOM05D002957 ORTHO05D007941 2.8e-33 145.6 103 68.0
Rhsim12G0169500 Rhododendron simsii HOM05D002957 ORTHO05D007941 3.6e-33 145.2 105 64.8
Aa31LG7G11100 Aethionema arabicum HOM05D002957 ORTHO05D007941 4.7e-33 144.8 108 64.8
Nitab4.5_0001377g0020 Nicotiana tabacum HOM05D002957 ORTHO05D007941 4.7e-33 144.8 103 68.0
CARHR232120 Cardamine hirsuta HOM05D002957 ORTHO05D007941 6.2e-33 144.4 108 62.0
AT4G24750 Arabidopsis thaliana HOM05D002957 ORTHO05D007941 1.1e-32 143.7 108 62.0
arahy.Tifrunner.gnm1.ann1.DF1MTK Arachis hypogaea HOM05D002957 ORTHO05D007941 1.1e-32 143.7 107 63.6
BcaC09g50835 Brassica carinata HOM05D002957 ORTHO05D007941 1.1e-32 143.7 108 63.9
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 1.1e-32 143.7 108 63.9
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 1.1e-32 143.7 108 63.9
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 1.1e-32 143.7 108 63.9
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 1.1e-32 143.7 108 63.9
Nn3g16664 Nelumbo nucifera HOM05D002957 ORTHO05D007941 1.1e-32 143.7 107 65.4
Carub.0007s1631 Capsella rubella HOM05D002957 ORTHO05D007941 1.4e-32 143.3 108 63.0
Solyc12g021340.3 Solanum lycopersicum HOM05D002957 ORTHO05D007941 1.4e-32 143.3 108 66.7
Sopen12g011690 Solanum pennellii HOM05D002957 ORTHO05D007941 1.4e-32 143.3 108 66.7
Aqoxy5G03698 Aquilegia oxysepala HOM05D002957 ORTHO05D007941 2.4e-32 142.5 112 61.6
Peaxi162Scf00801g00733 Petunia axillaris HOM05D002957 ORTHO05D007941 2.4e-32 142.5 108 64.8
Sc04g0001210 Simmondsia chinensis HOM05D002957 ORTHO05D007941 2.4e-32 142.5 107 63.6
Sp7g22730 Schrenkiella parvula HOM05D002957 ORTHO05D007941 6.9e-32 141.0 108 62.0
TAR622G0090 Trochodendron aralioides HOM05D002957 ORTHO05D007941 6.9e-32 141.0 112 60.7
PSO063G7275 Papaver somniferum HOM05D002957 ORTHO05D007941 3.4e-31 138.7 113 61.1
PSO210G3123 Papaver somniferum HOM05D002957 ORTHO05D007941 3.4e-31 138.7 113 61.1
Cc04_g11180 Coffea canephora HOM05D002957 ORTHO05D007941 1.7e-30 136.3 112 60.7
Haze_07617 Corylus avellana HOM05D002957 ORTHO05D007941 6.4e-30 134.4 170 46.5
unitig_8.g3070 Utricularia gibba HOM05D002957 ORTHO05D007941 6.4e-30 134.4 108 58.3
THA.LOC104809647 Tarenaya hassleriana HOM05D002957 ORTHO05D007941 1.1e-29 133.7 99 64.6
Sc04g0001230 Simmondsia chinensis HOM05D002957 ORTHO05D007941 2.1e-28 129.4 125 53.6
SGA_v2.0_scaffold90G27815 Striga asiatica HOM05D002957 ORTHO05D007941 1.1e-26 123.6 95 65.3
Cpa.g.sc159.6 Carica papaya HOM05D002957 ORTHO05D007941 3.3e-26 122.1 105 61.9
Zm00001eb246160 Zea mays HOM05D002957 ORTHO05D007941 4.3e-26 121.7 103 56.3
Os02g0596000 Oryza sativa ssp. japonica HOM05D002957 ORTHO05D007941 8.1e-25 117.5 107 50.5
CDE08G0657 Ceratophyllum demersum HOM05D002957 ORTHO05D007941 1.2e-23 113.6 95 57.9
ATR0199G004 Amborella trichopoda HOM05D002957 ORTHO05D007941 2.0e-23 112.8 146 44.5
SMO364G0570 Selaginella moellendorffii HOM05D002957 ORTHO05D007941 2.0e-23 112.8 100 51.0
Eucgr.B00189 Eucalyptus grandis HOM05D002957 ORTHO05D007941 8.4e-22 107.5 98 52.0
Mapoly0042s0113 Marchantia polymorpha HOM05D002957 ORTHO05D007941 5.4e-21 104.8 97 48.5
TWI39G0012 Tripterygium wilfordii HOM05D002957 ORTHO05D007941 1.2e-20 103.6 99 51.5
AagrBONN_evm.TU.Sc2ySwM_344.1972 Anthoceros agrestis HOM05D002957 ORTHO05D007941 5.1e-19 98.2 98 45.9
CBR_g34898 Chara braunii HOM05D002957 ORTHO05D007941 5.1e-19 98.2 98 46.9
Dinv11133 Davidia involucrata HOM05D002957 ORTHO05D007941 1.5e-18 96.7 75 62.7
Pp3c7_15530 Physcomitrium patens HOM05D002957 ORTHO05D007941 2.1e-17 92.8 98 41.8
SalBow5G3338 Salvia bowleyana HOM05D002957 ORTHO05D007941 2.8e-17 92.4 99 48.5
Pp3c6_20980 Physcomitrium patens HOM05D002957 ORTHO05D007941 2.4e-16 89.4 98 42.9
MD14G1168400 Malus domestica HOM05D002957 ORTHO05D007941 2.9e-14 82.4 97 49.5
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 3.8e-14 82.0 53 71.7
CAN.G59.20 Capsicum annuum HOM05D002957 ORTHO05D007941 4.2e-13 78.6 46 69.6
MBI10_g44128_MAGBIO Magnolia biondii HOM05D002957 ORTHO05D007941 7.9e-12 74.3 50 68.0
COL.COLO4_37865 Corchorus olitorius HOM05D002957 ORTHO05D007941 1.8e-11 73.2 55 67.3
DCAR_011893 Daucus carota HOM05D002957 ORTHO05D007941 5.6e-10 68.2 57 57.9


User provided reference genes

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