Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0335231 Rosa chinensis HOM05D003439 ORTHO05D004062 2.0e-65 252.3 125 100.0
RcHm_v2.0_Chr2g0118851 Rosa chinensis HOM05D003439 ORTHO05D004062 2.0e-65 252.3 125 100.0
RcHm_v2.0_Chr4g0396851 Rosa chinensis HOM05D003439 ORTHO05D004062 2.0e-65 252.3 125 100.0
RcHm_v2.0_Chr6g0268661 Rosa chinensis HOM05D003439 ORTHO05D004062 2.0e-65 252.3 125 100.0
RcHm_v2.0_Chr6g0277741 Rosa chinensis HOM05D003439 ORTHO05D004062 2.0e-65 252.3 125 100.0
RcHm_v2.0_Chr5g0011001 Rosa chinensis HOM05D003439 ORTHO05D004062 4.4e-65 251.1 125 99.2
RcHm_v2.0_Chr7g0198761 Rosa chinensis HOM05D003439 ORTHO05D004062 1.7e-64 249.2 125 98.4
RcHm_v2.0_Chr2g0126511 Rosa chinensis HOM05D003439 ORTHO05D025162 1.4e-47 193.0 97 97.9
RcHm_v2.0_Chr2g0159271 Rosa chinensis HOM05D003439 ORTHO05D004062 7.8e-30 134.0 185 44.9
MD09G1109000 Malus domestica HOM05D003439 ORTHO05D004062 8.6e-29 130.6 185 42.7
MD17G1097000 Malus domestica HOM05D003439 ORTHO05D004062 8.6e-29 130.6 185 42.7
Psat3g162480 Pisum sativum HOM05D003439 ORTHO05D004062 1.5e-28 129.8 142 49.3
Psat3g162520 Pisum sativum HOM05D003439 ORTHO05D004062 1.5e-28 129.8 142 49.3
RcHm_v2.0_Chr3g0496911 Rosa chinensis HOM05D003439 ORTHO05D025162 1.5e-28 129.8 67 92.5
FAN02G4351 Fragaria x ananassa HOM05D003439 ORTHO05D004062 2.5e-28 129.0 191 42.9
Prupe.3G217100 Prunus persica HOM05D003439 ORTHO05D004062 4.3e-28 128.3 185 43.2
Thecc.02G314800 Theobroma cacao HOM05D003439 ORTHO05D004062 9.5e-28 127.1 187 40.6
FAN09G3949 Fragaria x ananassa HOM05D003439 ORTHO05D004062 1.6e-27 126.3 185 43.2
SalBow7G1393 Salvia bowleyana HOM05D003439 ORTHO05D004062 1.6e-27 126.3 187 41.2
A09p67580 Brassica napus HOM05D003439 ORTHO05D004062 2.1e-27 125.9 170 41.8
Gohir.D02G133600 Gossypium hirsutum HOM05D003439 ORTHO05D004062 2.8e-27 125.6 185 41.6
Gorai.005G149600 Gossypium raimondii HOM05D003439 ORTHO05D004062 2.8e-27 125.6 185 41.6
FAN05G3766 Fragaria x ananassa HOM05D003439 ORTHO05D004062 3.6e-27 125.2 185 42.7
Gohir.A03G108400 Gossypium hirsutum HOM05D003439 ORTHO05D004062 4.7e-27 124.8 185 41.6
Duzib251G0240 Durio zibethinus HOM05D003439 ORTHO05D004062 6.1e-27 124.4 185 40.5
FvH4_6g43170 Fragaria vesca HOM05D003439 ORTHO05D004062 6.1e-27 124.4 185 42.7
FAN14G2769 Fragaria x ananassa HOM05D003439 ORTHO05D004062 6.1e-27 124.4 185 42.7
Oeu041919.3 Olea europaea HOM05D003439 ORTHO05D004062 8.0e-27 124.0 185 41.6
ClCG02G008740 Citrullus lanatus HOM05D003439 ORTHO05D004062 1.0e-26 123.6 187 39.6
Dinv39712 Davidia involucrata HOM05D003439 ORTHO05D004062 1.0e-26 123.6 185 42.2
Duzib248G0706 Durio zibethinus HOM05D003439 ORTHO05D004062 1.0e-26 123.6 185 40.5
Eucgr.A01128 Eucalyptus grandis HOM05D003439 ORTHO05D004062 1.0e-26 123.6 185 41.1
GSVIVG01030423001 Vitis vinifera HOM05D003439 ORTHO05D004062 1.0e-26 123.6 185 40.5
COL.COLO4_27713 Corchorus olitorius HOM05D003439 ORTHO05D004062 1.8e-26 122.9 185 41.6
Sed0015779 Sechium edule HOM05D003439 ORTHO05D004062 1.8e-26 122.9 185 39.5
Lalb_Chr19g0135881 Lupinus albus HOM05D003439 ORTHO05D004062 3.0e-26 122.1 187 40.1
Peaxi162Scf00389g00814 Petunia axillaris HOM05D003439 ORTHO05D004062 4.0e-26 121.7 185 40.5
Ciclev10014908m.g Citrus clementina HOM05D003439 ORTHO05D004062 5.2e-26 121.3 185 40.0
Medtr4g048220 Medicago truncatula HOM05D003439 ORTHO05D004062 5.2e-26 121.3 187 39.6
CAN.G553.19 Capsicum annuum HOM05D003439 ORTHO05D004062 6.8e-26 120.9 190 38.4
Solyc11g072460.2 Solanum lycopersicum HOM05D003439 ORTHO05D004062 6.8e-26 120.9 185 40.0
VMungo1127G2094 Vigna mungo HOM05D003439 ORTHO05D004062 6.8e-26 120.9 187 39.6
Nitab4.5_0001213g0070 Nicotiana tabacum HOM05D003439 ORTHO05D004062 8.9e-26 120.6 185 39.5
Nitab4.5_0006567g0010 Nicotiana tabacum HOM05D003439 ORTHO05D004062 8.9e-26 120.6 185 39.5
Sed0026537 Sechium edule HOM05D003439 ORTHO05D004062 8.9e-26 120.6 185 38.4
Lj3g0022714 Lotus japonicus HOM05D003439 ORTHO05D004062 1.2e-25 120.2 187 38.5
Sopen11g030100 Solanum pennellii HOM05D003439 ORTHO05D004062 1.2e-25 120.2 185 40.0
Cpa.g.sc87.77 Carica papaya HOM05D003439 ORTHO05D004062 1.5e-25 119.8 187 39.6
PGR042G0375 Punica granatum HOM05D003439 ORTHO05D004062 1.5e-25 119.8 185 39.5
MELO3C019269.2 Cucumis melo HOM05D003439 ORTHO05D004062 2.0e-25 119.4 185 38.4
CsaV3_2G034930 Cucumis sativus L. HOM05D003439 ORTHO05D004062 2.0e-25 119.4 185 38.4
HanXRQChr05g0144141 Helianthus annuus HOM05D003439 ORTHO05D004062 2.0e-25 119.4 185 38.9
Glyma.12G098800 Glycine max HOM05D003439 ORTHO05D004062 2.6e-25 119.0 187 39.0
PGSC0003DMG400027403 Solanum tuberosum HOM05D003439 ORTHO05D004062 2.6e-25 119.0 185 39.5
EL10Ac8g19506 Beta vulgaris HOM05D003439 ORTHO05D004062 3.4e-25 118.6 187 38.5
Psat0s800g0080 Pisum sativum HOM05D003439 ORTHO05D004062 3.4e-25 118.6 161 42.9
ECA232G2998 Erigeron canadensis HOM05D003439 ORTHO05D004062 4.4e-25 118.2 185 40.0
Migut.M00436 Erythranthe guttata HOM05D003439 ORTHO05D004062 4.4e-25 118.2 187 39.0
Sopen12g001820 Solanum pennellii HOM05D003439 ORTHO05D004062 4.4e-25 118.2 185 38.9
THA.LOC104800990 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 4.4e-25 118.2 187 37.4
BraA09t42091Z Brassica rapa HOM05D003439 ORTHO05D004062 5.8e-25 117.9 187 37.4
SGA_v2.0_scaffold70G23396 Striga asiatica HOM05D003439 ORTHO05D004062 5.8e-25 117.9 170 41.2
BcaNung05930 Brassica carinata HOM05D003439 ORTHO05D004062 7.5e-25 117.5 185 37.3
Glyma.06G305800 Glycine max HOM05D003439 ORTHO05D004062 7.5e-25 117.5 187 38.5
Psat7g157240 Pisum sativum HOM05D003439 ORTHO05D004062 7.5e-25 117.5 187 38.5
Aa31LG1G19570 Aethionema arabicum HOM05D003439 ORTHO05D004062 9.8e-25 117.1 185 37.8
CANSAT64G1323 Cannabis sativa HOM05D003439 ORTHO05D004062 9.8e-25 117.1 185 39.5
Sc21g0001430 Simmondsia chinensis HOM05D003439 ORTHO05D004062 9.8e-25 117.1 185 38.9
Solyc12g005870.3 Solanum lycopersicum HOM05D003439 ORTHO05D004062 9.8e-25 117.1 185 38.4
TAR627G1083 Trochodendron aralioides HOM05D003439 ORTHO05D004062 9.8e-25 117.1 187 38.0
Thhalv10007362m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 1.3e-24 116.7 185 36.8
Potri.002G229100 Populus trichocarpa HOM05D003439 ORTHO05D004062 1.3e-24 116.7 185 40.5
Sabra14G0116100 Salix brachista HOM05D003439 ORTHO05D004062 1.3e-24 116.7 185 40.5
TWI36G1050 Tripterygium wilfordii HOM05D003439 ORTHO05D004062 1.3e-24 116.7 182 40.1
BcaB02g10470 Brassica carinata HOM05D003439 ORTHO05D004062 1.7e-24 116.3 183 37.7
Potri.014G153500 Populus trichocarpa HOM05D003439 ORTHO05D004062 1.7e-24 116.3 185 40.5
arahy.Tifrunner.gnm1.ann1.N0VMF0 Arachis hypogaea HOM05D003439 ORTHO05D004062 2.2e-24 115.9 185 38.9
arahy.Tifrunner.gnm1.ann1.S34EA0 Arachis hypogaea HOM05D003439 ORTHO05D004062 2.2e-24 115.9 185 38.9
Cfa014399 Carpinus fangiana HOM05D003439 ORTHO05D004062 2.2e-24 115.9 185 38.4
Ca_26960_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 2.2e-24 115.9 187 38.0
Haze_12863 Corylus avellana HOM05D003439 ORTHO05D004062 2.2e-24 115.9 185 38.4
AT1G05180 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 2.9e-24 115.5 186 37.1
BcaC07g36858 Brassica carinata HOM05D003439 ORTHO05D004062 2.9e-24 115.5 187 36.4
Phvul.011G103600 Phaseolus vulgaris HOM05D003439 ORTHO05D004062 2.9e-24 115.5 185 37.8
TPR.G4641 Trifolium pratense HOM05D003439 ORTHO05D004062 2.9e-24 115.5 185 38.4
BraA08t35555Z Brassica rapa HOM05D003439 ORTHO05D004062 3.7e-24 115.2 187 35.8
CSS0041453 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 4.9e-24 114.8 189 38.1
Sp1g04030 Schrenkiella parvula HOM05D003439 ORTHO05D004062 4.9e-24 114.8 185 36.8
SpUn0024_0110 Schrenkiella parvula HOM05D003439 ORTHO05D004062 4.9e-24 114.8 185 36.8
Aqoxy1G02139 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 6.4e-24 114.4 185 39.5
AUR62032477 Chenopodium quinoa HOM05D003439 ORTHO05D004062 6.4e-24 114.4 188 38.3
Ca_29946_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 6.4e-24 114.4 185 37.8
Cc05_g04590 Coffea canephora HOM05D003439 ORTHO05D004062 6.4e-24 114.4 185 39.5
Sabra02G0175100 Salix brachista HOM05D003439 ORTHO05D004062 6.4e-24 114.4 185 40.5
Sp4g14780 Schrenkiella parvula HOM05D003439 ORTHO05D004062 6.4e-24 114.4 176 37.5
THA.LOC104816043 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 6.4e-24 114.4 185 36.8
A10p03710 Brassica napus HOM05D003439 ORTHO05D004062 8.3e-24 114.0 185 36.2
C08p01780 Brassica napus HOM05D003439 ORTHO05D004062 8.3e-24 114.0 187 35.8
BolC8t46978H Brassica oleracea HOM05D003439 ORTHO05D004062 8.3e-24 114.0 187 35.8
BraA10t42644Z Brassica rapa HOM05D003439 ORTHO05D004062 8.3e-24 114.0 185 36.2
QL08p033044 Quercus lobata HOM05D003439 ORTHO05D004062 8.3e-24 114.0 185 37.8
AUR62043065 Chenopodium quinoa HOM05D003439 ORTHO05D004062 1.1e-23 113.6 188 38.3
Actinidia27265 Actinidia chinensis HOM05D003439 ORTHO05D004062 1.4e-23 113.2 188 39.4
AL4G27800 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 1.4e-23 113.2 183 37.2
CAN.G80.46 Capsicum annuum HOM05D003439 ORTHO05D004062 1.4e-23 113.2 182 37.9
CiPaw.03G159900 Carya illinoinensis HOM05D003439 ORTHO05D004062 1.4e-23 113.2 185 38.4
Thhalv10016512m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 1.4e-23 113.2 183 36.6
MSTRG.6579 Avicennia marina HOM05D003439 ORTHO05D004062 1.9e-23 112.8 185 38.9
A08p36540 Brassica napus HOM05D003439 ORTHO05D004062 1.9e-23 112.8 187 35.8
C05p03410 Brassica napus HOM05D003439 ORTHO05D004062 1.9e-23 112.8 185 35.7
BolC5t29120H Brassica oleracea HOM05D003439 ORTHO05D004062 1.9e-23 112.8 185 35.7
Aqoxy2G04140 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 2.4e-23 112.5 185 37.3
Lj1C765G0 Lonicera japonica HOM05D003439 ORTHO05D004062 2.4e-23 112.5 206 37.4
TAR629G2369 Trochodendron aralioides HOM05D003439 ORTHO05D004062 2.4e-23 112.5 184 38.0
Carub.0001s0445 Capsella rubella HOM05D003439 ORTHO05D004062 3.2e-23 112.1 185 35.7
CARHR126230 Cardamine hirsuta HOM05D003439 ORTHO05D004062 3.2e-23 112.1 183 37.2
CSS0047283 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 5.4e-23 111.3 185 38.4
Manes.12G066600 Manihot esculenta HOM05D003439 ORTHO05D004062 5.4e-23 111.3 184 39.1
Atru.chr6.3185 Acer truncatum HOM05D003439 ORTHO05D004062 7.0e-23 110.9 180 39.4
AL1G14940 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 7.0e-23 110.9 186 36.0
CARHR004640 Cardamine hirsuta HOM05D003439 ORTHO05D004062 9.2e-23 110.5 185 37.3
MBI02_g21885_MAGBIO Magnolia biondii HOM05D003439 ORTHO05D004062 1.2e-22 110.2 183 37.2
Carub.0004s1376 Capsella rubella HOM05D003439 ORTHO05D004062 1.6e-22 109.8 186 34.4
A05p13180 Brassica napus HOM05D003439 ORTHO05D004062 2.0e-22 109.4 183 36.1
BraA05t20259Z Brassica rapa HOM05D003439 ORTHO05D004062 2.0e-22 109.4 183 36.1
Nn1g07136 Nelumbo nucifera HOM05D003439 ORTHO05D004062 2.0e-22 109.4 185 36.8
PSO541G1862 Papaver somniferum HOM05D003439 ORTHO05D004062 2.0e-22 109.4 187 36.9
PSO675G5573 Papaver somniferum HOM05D003439 ORTHO05D004062 2.0e-22 109.4 187 36.9
ATR0794G065 Amborella trichopoda HOM05D003439 ORTHO05D004062 2.7e-22 109.0 185 34.6
BcaC02g11324 Brassica carinata HOM05D003439 ORTHO05D004062 2.7e-22 109.0 183 36.1
C04p17240 Brassica napus HOM05D003439 ORTHO05D004062 2.7e-22 109.0 183 36.1
BolC4t23276H Brassica oleracea HOM05D003439 ORTHO05D004062 2.7e-22 109.0 183 36.1
RcHm_v2.0_Chr1g0323891 Rosa chinensis HOM05D003439 ORTHO05D025162 7.8e-22 107.5 53 100.0
DCAR_019274 Daucus carota HOM05D003439 ORTHO05D004062 2.3e-21 105.9 185 38.4
AT2G32410 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 3.9e-21 105.1 183 35.0
SGA_v2.0_scaffold34G13839 Striga asiatica HOM05D003439 ORTHO05D004062 3.9e-21 105.1 175 38.3
Hund02156 Selenicereus undatus HOM05D003439 ORTHO05D004062 1.5e-20 103.2 185 35.1
HPP92_015981 Vanilla planifolia HOM05D003439 ORTHO05D004062 3.3e-20 102.1 185 35.7
CDE11G0886 Ceratophyllum demersum HOM05D003439 ORTHO05D004062 9.5e-20 100.5 185 31.9
SHI10354 Sapria himalayana HOM05D003439 ORTHO05D004062 4.7e-19 98.2 187 34.2
Os03g0820100 Oryza sativa ssp. japonica HOM05D003439 ORTHO05D004062 3.1e-18 95.5 185 34.1
Zm00001eb062550 Zea mays HOM05D003439 ORTHO05D004062 8.9e-18 94.0 185 33.5
Zm00001eb211770 Zea mays HOM05D003439 ORTHO05D004062 2.0e-17 92.8 185 33.0
Mapoly0005s0094 Marchantia polymorpha HOM05D003439 ORTHO05D004062 1.4e-15 86.7 178 34.8
BolC8t52726H Brassica oleracea HOM05D003439 ORTHO05D004062 3.2e-15 85.5 168 32.7
C08p51960 Brassica napus HOM05D003439 ORTHO05D004062 3.5e-14 82.0 166 32.5
Pp3c2_11270 Physcomitrium patens HOM05D003439 ORTHO05D004062 1.7e-13 79.7 179 30.2
BcaC07g42149 Brassica carinata HOM05D003439 ORTHO05D004062 2.3e-13 79.3 164 32.3
unitig_0.g729 Utricularia gibba HOM05D003439 ORTHO05D004062 3.0e-13 79.0 110 43.6
AagrBONN_evm.TU.Sc2ySwM_228.3702 Anthoceros agrestis HOM05D003439 ORTHO05D004062 5.1e-13 78.2 180 28.3
SMO140G0107 Selaginella moellendorffii HOM05D003439 ORTHO05D004062 6.6e-13 77.8 181 28.7
COL.COLO4_19119 Corchorus olitorius HOM05D003439 ORTHO05D025162 8.6e-13 77.4 45 77.8
Lsat_1_v5_gn_9_43200 Lactuca sativa HOM05D003439 ORTHO05D004062 8.6e-13 77.4 162 33.3
SEGI_10475 Sequoiadendron giganteum HOM05D003439 ORTHO05D004062 1.9e-12 76.3 51 70.6
CBR_g50442 Chara braunii HOM05D003439 ORTHO05D004062 4.3e-12 75.1 181 28.2
Pp3c14_7440 Physcomitrium patens HOM05D003439 ORTHO05D004062 1.2e-11 73.6 183 27.3
Psat1g032280 Pisum sativum HOM05D003439 ORTHO05D004062 1.2e-11 73.6 47 70.2
CBR_g55862 Chara braunii HOM05D003439 ORTHO05D004062 3.6e-11 72.0 181 28.2
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.1e-10 70.5 149 34.9
vmacro12203 Vaccinium macrocarpon HOM05D003439 ORTHO05D004062 5.2e-10 68.2 50 68.0
Hma1.2p1_0032F.1_g018780 Hydrangea macrophylla HOM05D003439 ORTHO05D007904 4.4e-09 65.1 44 65.9
Manes.12G074303 Manihot esculenta HOM05D003439 ORTHO05D004062 9.9e-09 63.9 72 48.6
Hma1.2p1_0576F.1_g182010 Hydrangea macrophylla HOM05D003439 ORTHO05D004062 1.7e-08 63.2 32 78.1
Hma1.2p1_0257F.1_g103570 Hydrangea macrophylla HOM05D003439 ORTHO05D004062 3.7e-08 62.0 31 77.4
RcHm_v2.0_Chr6g0280031 Rosa chinensis HOM05D003439 ORTHO05D004062 1.1e-07 60.5 41 65.9
CSS0017187 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 4.1e-07 58.5 42 64.3
RcHm_v2.0_Chr3g0476741 Rosa chinensis HOM05D003439 ORTHO05D025162 4.1e-07 58.5 28 100.0
BolC3t21144H Brassica oleracea HOM05D003439 ORTHO05D004062 7.1e-07 57.8 28 78.6
Psat1g032320 Pisum sativum HOM05D003439 ORTHO05D004062 9.2e-07 57.4 32 75.0
PRCOL_00002650 Prasinoderma coloniale HOM05D003439 ORTHO05D004062 3.5e-06 55.5 79 44.3
SEGI_36291 Sequoiadendron giganteum HOM05D003439 ORTHO05D004062 3.5e-06 55.5 30 70.0


User provided reference genes

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