Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0118531 Rosa chinensis HOM05D000540 ORTHO05D009557 5.3e-22 106.7 50 100.0
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 3.2e-19 97.4 50 92.0
FvH4_6g09000 Fragaria vesca HOM05D000445 ORTHO05D000314 3.2e-19 97.4 50 92.0
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 4.2e-19 97.1 50 90.0
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 4.2e-19 97.1 49 91.8
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 4.2e-19 97.1 49 91.8
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 4.2e-19 97.1 49 91.8
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 4.2e-19 97.1 49 91.8
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 4.2e-19 97.1 50 90.0
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 4.2e-19 97.1 50 90.0
Lsat_1_v5_gn_5_50501 Lactuca sativa HOM05D000540 ORTHO05D009557 4.2e-19 97.1 50 90.0
RcHm_v2.0_CPg0501831 Rosa chinensis HOM05D000540 ORTHO05D009557 9.4e-19 95.9 50 90.0
CARHR282280 Cardamine hirsuta HOM05D000540 ORTHO05D009557 1.2e-18 95.5 50 88.0
Glyma.18G078500 Glycine max HOM05D000540 ORTHO05D009557 1.2e-18 95.5 50 90.0
Nn021s41517 Nelumbo nucifera HOM05D000540 ORTHO05D009557 1.2e-18 95.5 50 88.0
Nn070s42375 Nelumbo nucifera HOM05D000540 ORTHO05D009557 1.2e-18 95.5 50 88.0
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 1.6e-18 95.1 50 90.0
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 1.6e-18 95.1 50 88.0
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 1.6e-18 95.1 50 90.0
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.6e-18 95.1 50 88.0
AL1G45050 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 2.7e-18 94.4 50 86.0
AL2G20510 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 2.7e-18 94.4 50 86.0
BNapus_Darmor_BZH_scaffold_253p00380 Brassica napus HOM05D000540 ORTHO05D009557 2.7e-18 94.4 50 86.0
C03p38140 Brassica napus HOM05D000540 ORTHO05D009557 2.7e-18 94.4 50 86.0
C09p40100 Brassica napus HOM05D000540 ORTHO05D000681 2.7e-18 94.4 50 86.0
BolC9t56905H Brassica oleracea HOM05D000540 ORTHO05D009557 2.7e-18 94.4 50 86.0
BolSC35t60674H Brassica oleracea HOM05D000540 ORTHO05D009557 2.7e-18 94.4 50 86.0
BolSC35t60725H Brassica oleracea HOM05D000540 ORTHO05D000681 2.7e-18 94.4 50 86.0
BolSC56t61244H Brassica oleracea HOM05D000540 ORTHO05D009557 2.7e-18 94.4 50 86.0
BraSC103t45442Z Brassica rapa HOM05D000540 ORTHO05D009557 2.7e-18 94.4 50 86.0
BraSC59t46567Z Brassica rapa HOM05D000540 ORTHO05D009557 2.7e-18 94.4 50 86.0
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 2.7e-18 94.4 50 86.0
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 3.6e-18 94.0 50 86.0
RcHm_v2.0_Chr1g0329571 Rosa chinensis HOM05D000540 ORTHO05D009557 3.6e-18 94.0 50 88.0
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 6.1e-18 93.2 50 88.0
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 6.1e-18 93.2 50 88.0
Oeu028768.1 Olea europaea HOM05D000540 ORTHO05D009557 6.1e-18 93.2 50 90.0
BolC7t41706H Brassica oleracea HOM05D000540 ORTHO05D009557 1.0e-17 92.4 50 84.0
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.4e-17 92.0 50 86.0
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.4e-17 92.0 50 86.0
Nn4g25228 Nelumbo nucifera HOM05D000540 ORTHO05D009557 1.8e-17 91.7 50 84.0
Gohir.D05G303851 Gossypium hirsutum HOM05D000540 ORTHO05D009557 2.3e-17 91.3 50 84.0
Prupe.4G266600 Prunus persica HOM05D000540 ORTHO05D009557 1.1e-16 89.0 50 84.0
arahy.Tifrunner.gnm1.ann1.CR1XRQ Arachis hypogaea HOM05D003165 ORTHO05D009557 3.3e-16 87.4 49 83.7
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 3.3e-16 87.4 47 83.0
Potri.019G013302 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.7e-15 85.1 50 78.0
Gorai.004G123300 Gossypium raimondii HOM05D000540 ORTHO05D009557 3.7e-15 84.0 50 78.0
MBI12_g23294_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 3.7e-15 84.0 50 76.0
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 6.3e-15 83.2 48 77.1
MBI12_g18826_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 1.8e-14 81.6 48 75.0
Gohir.D04G028750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 3.1e-14 80.9 50 76.0
SMO086G0012 Selaginella moellendorffii HOM05D000540 ORTHO05D009557 2.6e-13 77.8 49 71.4
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 4.5e-13 77.0 50 72.0
Hund31045 Selenicereus undatus HOM05D000540 ORTHO05D000681 3.8e-12 73.9 47 70.2
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.1e-11 72.4 37 86.5
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 1.9e-11 71.6 41 70.7
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 4.2e-11 70.5 41 68.3
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 2.1e-10 68.2 49 57.1
Medtr0002s0360 Medicago truncatula HOM05D000540 ORTHO05D000681 2.1e-10 68.2 52 63.5
Medtr0002s0800 Medicago truncatula HOM05D000540 ORTHO05D000681 2.1e-10 68.2 52 63.5
Medtr8g038480 Medicago truncatula HOM05D000540 ORTHO05D009557 2.1e-10 68.2 39 79.5
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 7.9e-10 66.2 37 78.4
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 2.0e-08 61.6 36 77.8
CDE04G1374 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 3.3e-08 60.8 41 63.4
CDE07G1014 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 3.3e-08 60.8 41 63.4
BraSC138t45550Z Brassica rapa HOM05D000540 ORTHO05D009557 1.7e-07 58.5 30 83.3
Peaxi162Scf00211g00236 Petunia axillaris HOM05D000540 ORTHO05D000681 1.1e-06 55.8 28 92.9
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.1e-06 55.8 31 80.6
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.1e-06 55.8 31 80.6
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.1e-06 55.8 31 80.6
PSO675G7318 Papaver somniferum HOM05D000540 ORTHO05D009557 1.8e-06 55.1 40 60.0
PSO349G0315 Papaver somniferum HOM05D000540 ORTHO05D009557 2.4e-06 54.7 40 57.5


User provided reference genes

Program Settings