Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0118121 Rosa chinensis HOM05D000003 ORTHO05D006737 8.6e-57 223.4 111 100.0
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 2.9e-28 128.6 107 56.1
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 2.4e-27 125.6 101 55.4
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 4.6e-26 121.3 101 55.4
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 1.0e-25 120.2 107 51.4
RcHm_v2.0_Chr2g0125521 Rosa chinensis HOM05D000003 ORTHO05D006737 3.9e-25 118.2 107 52.3
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 8.7e-25 117.1 107 50.5
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 1.9e-24 115.9 107 52.3
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 1.9e-24 115.9 110 49.1
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 2.5e-24 115.5 107 52.3
FAN25G3140 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.3e-24 115.2 99 55.6
RcHm_v2.0_Chr4g0397511 Rosa chinensis HOM05D000003 ORTHO05D006737 2.1e-23 112.5 102 51.0
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 3.7e-23 111.7 104 51.0
FAN14G5848 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.2e-23 110.5 107 48.6
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-22 109.8 104 50.0
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 1.4e-22 109.8 104 50.0
FAN13G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.1e-22 108.6 101 46.5
RcHm_v2.0_Chr5g0033371 Rosa chinensis HOM05D000003 ORTHO05D006737 3.1e-22 108.6 98 54.1
FAN18G0619 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.3e-22 107.8 101 46.5
RcHm_v2.0_Chr7g0212601 Rosa chinensis HOM05D000003 ORTHO05D006737 9.0e-22 107.1 107 50.5
FAN12G3592 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-21 106.7 95 51.6
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 1.2e-21 106.7 95 53.7
FAN12G2468 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.5e-21 106.3 94 51.1
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 2.0e-21 105.9 94 51.1
RcHm_v2.0_Chr7g0198361 Rosa chinensis HOM05D000003 ORTHO05D006737 4.5e-21 104.8 102 47.1
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 7.6e-21 104.0 99 51.5
FvH4_3g27973 Fragaria vesca HOM05D000003 ORTHO05D006737 1.3e-20 103.2 95 48.4
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 4.9e-20 101.3 100 47.0
RcHm_v2.0_Chr1g0336051 Rosa chinensis HOM05D000003 ORTHO05D006737 8.4e-20 100.5 98 49.0
FAN01G2436 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.9e-19 99.4 104 44.2
RcHm_v2.0_Chr5g0072311 Rosa chinensis HOM05D000003 ORTHO05D006737 1.9e-19 99.4 95 49.5
FvH4_6g06990 Fragaria vesca HOM05D000003 ORTHO05D006737 3.2e-19 98.6 85 52.9
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 4.2e-19 98.2 107 43.0
RcHm_v2.0_Chr4g0395671 Rosa chinensis HOM05D000003 ORTHO05D006737 4.2e-19 98.2 94 53.2
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 5.5e-19 97.8 103 43.7
FAN01G1087 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.1e-19 97.4 101 47.5
FvH4_1g19421 Fragaria vesca HOM05D000003 ORTHO05D006737 9.3e-19 97.1 93 50.5
FvH4_4g10782 Fragaria vesca HOM05D000003 ORTHO05D006737 9.3e-19 97.1 104 41.3
FAN20G2266 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.3e-19 97.1 107 45.8
RcHm_v2.0_Chr5g0036711 Rosa chinensis HOM05D000003 ORTHO05D006737 9.3e-19 97.1 85 57.6
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 2.1e-18 95.9 100 45.0
FAN15G1410 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.1e-18 95.9 89 46.1
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 6.0e-18 94.4 87 48.3
RcHm_v2.0_Chr3g0474921 Rosa chinensis HOM05D000003 ORTHO05D006737 6.0e-18 94.4 87 54.0
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 7.9e-18 94.0 100 46.0
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 1.3e-17 93.2 102 43.1
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 1.8e-17 92.8 86 53.5
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 2.3e-17 92.4 86 52.3
FAN07G0617 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.7e-17 90.9 101 43.6
FvH4_6g32941 Fragaria vesca HOM05D000003 ORTHO05D006737 8.7e-17 90.5 107 40.2
FvH4_5g30811 Fragaria vesca HOM05D000003 ORTHO05D006737 1.1e-16 90.1 86 51.2
RcHm_v2.0_Chr4g0423161 Rosa chinensis HOM05D000003 ORTHO05D006737 1.9e-16 89.4 81 55.6
FvH4_2g19503 Fragaria vesca HOM05D000003 ORTHO05D006737 2.5e-16 89.0 83 53.0
RcHm_v2.0_Chr6g0260491 Rosa chinensis HOM05D000003 ORTHO05D006737 7.4e-16 87.4 76 52.6
FAN27G1320 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-15 86.3 85 48.2
FAN14G3227 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.2e-15 85.9 91 42.9
FAN19G0394 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.2e-15 85.9 85 48.2
FAN19G1043 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.2e-15 85.9 85 48.2
FAN13G3306 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.8e-15 84.7 77 49.4
FAN14G2822 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.8e-15 84.7 87 44.8
FvH4_6g08250 Fragaria vesca HOM05D000003 ORTHO05D006737 6.3e-15 84.3 87 44.8
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 5.3e-14 81.3 105 40.0
RcHm_v2.0_Chr1g0348191 Rosa chinensis HOM05D000003 ORTHO05D006737 2.6e-13 79.0 65 55.4
FAN11G0642 Fragaria x ananassa HOM05D000355 ORTHO05D000227 3.4e-13 78.6 76 47.4
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.9e-13 77.8 76 44.7
FAN15G2825 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.9e-13 77.8 90 43.3
FvH4_3g30681 Fragaria vesca HOM05D000003 ORTHO05D000006 7.6e-13 77.4 65 50.8
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 7.6e-13 77.4 67 53.7
FvH4_6g08193 Fragaria vesca HOM05D000003 ORTHO05D006737 7.6e-13 77.4 71 45.1
FAN18G0759 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.0e-12 77.0 74 47.3
FvH4_5g04911 Fragaria vesca HOM05D000003 ORTHO05D006737 1.4e-11 73.2 65 47.7
FAN04G0671 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-11 73.2 67 52.2
FvH4_5g01660 Fragaria vesca HOM05D000003 ORTHO05D006737 1.9e-11 72.8 108 39.8
FAN01G2975 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.2e-11 72.0 101 37.6
FAN03G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.2e-11 70.9 64 50.0
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 1.6e-10 69.7 96 38.5
FAN05G1256 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.6e-10 69.7 78 42.3
FAN01G1551 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.1e-10 69.3 63 50.8
FAN16G3138 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.6e-10 68.6 62 51.6
RcHm_v2.0_Chr2g0142781 Rosa chinensis HOM05D008833 ORTHO05D010662 3.6e-10 68.6 90 38.9
RcHm_v2.0_Chr5g0004021 Rosa chinensis HOM05D000003 ORTHO05D006737 4.6e-10 68.2 72 48.6
RcHm_v2.0_Chr5g0046251 Rosa chinensis HOM05D008833 ORTHO05D010662 6.1e-10 67.8 93 38.7
RcHm_v2.0_Chr2g0107121 Rosa chinensis HOM05D008833 ORTHO05D010662 1.0e-09 67.0 92 42.4
RcHm_v2.0_Chr2g0135511 Rosa chinensis HOM05D008833 ORTHO05D010662 1.0e-09 67.0 90 38.9
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 1.4e-09 66.6 58 48.3
FAN02G2776 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-09 66.6 82 45.1
RcHm_v2.0_Chr6g0276431 Rosa chinensis HOM05D008833 ORTHO05D010662 1.8e-09 66.2 102 36.3
RcHm_v2.0_Chr5g0038031 Rosa chinensis HOM05D009322 ORTHO05D010713 2.3e-09 65.9 92 38.0
RcHm_v2.0_Chr5g0044391 Rosa chinensis HOM05D008833 ORTHO05D010662 3.0e-09 65.5 92 38.0
FvH4_6g20980 Fragaria vesca HOM05D017784 ORTHO05D006737 3.9e-09 65.1 76 43.4
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 5.1e-09 64.7 53 50.9
FvH4_3g26222 Fragaria vesca HOM05D000003 ORTHO05D006737 1.1e-08 63.5 71 39.4
FAN14G0257 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.1e-08 63.5 67 40.3
FAN17G0585 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.1e-08 63.5 73 43.8
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 1.9e-08 62.8 92 37.0
FAN26G2731 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.9e-08 62.8 49 61.2
FAN08G0755 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.5e-08 62.4 65 44.6
FAN22G0118 Fragaria x ananassa HOM05D001283 ORTHO05D001109 2.5e-08 62.4 61 42.6
Dinv24219 Davidia involucrata HOM05D000003 ORTHO05D011454 9.7e-08 60.5 82 40.2
FvH4_6g31921 Fragaria vesca HOM05D000003 ORTHO05D006737 9.7e-08 60.5 56 51.8
FAN18G1324 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.7e-08 60.5 37 70.3
RcHm_v2.0_Chr1g0333161 Rosa chinensis HOM05D009322 ORTHO05D010713 9.7e-08 60.5 86 36.0
FAN07G0587 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-07 60.1 58 44.8
FAN19G0368 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-07 60.1 63 36.5
RcHm_v2.0_Chr5g0012401 Rosa chinensis HOM05D000003 ORTHO05D010713 1.3e-07 60.1 92 33.7
RcHm_v2.0_Chr6g0277591 Rosa chinensis HOM05D009322 ORTHO05D010713 1.7e-07 59.7 90 36.7
RcHm_v2.0_Chr6g0254571 Rosa chinensis HOM05D009322 ORTHO05D010713 2.8e-07 58.9 93 36.6
Cpa.g.sc19.281 Carica papaya HOM05D000003 ORTHO05D000022 4.8e-07 58.2 90 35.6
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 4.8e-07 58.2 103 34.0
Prupe.6G203400 Prunus persica HOM05D000003 ORTHO05D000167 4.8e-07 58.2 106 34.0
RcHm_v2.0_Chr6g0286611 Rosa chinensis HOM05D000003 ORTHO05D006737 4.8e-07 58.2 56 50.0
FvH4_5g01582 Fragaria vesca HOM05D000003 ORTHO05D006737 6.3e-07 57.8 63 44.4
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 6.3e-07 57.8 68 45.6
FAN19G2949 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.3e-07 57.8 56 46.4
Prupe.1G179300 Prunus persica HOM05D000003 ORTHO05D006737 6.3e-07 57.8 109 34.9
RcHm_v2.0_Chr6g0289791 Rosa chinensis HOM05D000003 ORTHO05D011454 6.3e-07 57.8 78 39.7
Dinv32432 Davidia involucrata HOM05D000003 ORTHO05D011454 8.2e-07 57.4 92 35.9
RcHm_v2.0_Chr5g0031531 Rosa chinensis HOM05D009322 ORTHO05D010713 8.2e-07 57.4 96 34.4
Dinv37210 Davidia involucrata HOM05D000003 ORTHO05D000167 1.1e-06 57.0 92 37.0
RcHm_v2.0_Chr7g0203591 Rosa chinensis HOM05D009322 ORTHO05D010713 1.1e-06 57.0 93 35.5
RcHm_v2.0_Chr5g0066061 Rosa chinensis HOM05D009322 ORTHO05D010713 1.4e-06 56.6 92 33.7
Ah.04g154180 Amaranthus hybridus HOM05D000003 ORTHO05D006737 1.8e-06 56.2 108 35.2
Duzib170G1141 Durio zibethinus HOM05D000003 ORTHO05D000167 2.4e-06 55.8 100 33.0
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 2.4e-06 55.8 57 47.4
FAN11G2439 Fragaria x ananassa HOM05D046867 ORTHO05D045776 2.4e-06 55.8 64 39.1
RcHm_v2.0_Chr5g0065221 Rosa chinensis HOM05D008833 ORTHO05D010662 2.4e-06 55.8 76 40.8
Atru.chr9.2211 Acer truncatum HOM05D000003 ORTHO05D000167 3.1e-06 55.5 92 33.7
FvH4_3g34330 Fragaria vesca HOM05D046867 ORTHO05D045776 3.1e-06 55.5 64 39.1
FvH4_4g07172 Fragaria vesca HOM05D000003 ORTHO05D006737 3.1e-06 55.5 52 48.1
FAN06G1148 Fragaria x ananassa HOM05D025964 ORTHO05D045392 3.1e-06 55.5 54 48.1
Sed0009635 Sechium edule HOM05D015284 ORTHO05D000167 3.1e-06 55.5 91 34.1
Dinv08915 Davidia involucrata HOM05D000003 ORTHO05D000167 4.1e-06 55.1 99 37.4
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.3e-06 54.7 102 31.4
QL02p082090 Quercus lobata HOM05D000003 ORTHO05D000167 5.3e-06 54.7 92 37.0
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 6.9e-06 54.3 98 34.7
Ah.12g061120 Amaranthus hybridus HOM05D000003 ORTHO05D000167 6.9e-06 54.3 103 34.0
CANSAT01G0905 Cannabis sativa HOM05D000003 ORTHO05D000167 6.9e-06 54.3 83 37.3
FvH4_7g10350 Fragaria vesca HOM05D025964 ORTHO05D045392 6.9e-06 54.3 55 45.5
FAN06G1488 Fragaria x ananassa HOM05D003102 ORTHO05D006737 6.9e-06 54.3 37 62.2
FAN08G2392 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.9e-06 54.3 69 40.6
LjContig00141g0007313 Lotus japonicus HOM05D000003 ORTHO05D000004 9.1e-06 53.9 91 36.3
Sed0017704 Sechium edule HOM05D000003 ORTHO05D000167 9.1e-06 53.9 100 30.0


User provided reference genes

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