Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0118021 Rosa chinensis HOM05D000001 ORTHO05D348684 7.8e-42 173.3 84 100.0
RcHm_v2.0_Chr2g0118001 Rosa chinensis HOM05D000001 ORTHO05D009988 7.8e-18 93.6 92 58.7
FAN26G2698 Fragaria x ananassa HOM05D001702 ORTHO05D009988 8.6e-17 90.1 80 58.8
FvH4_1g23230 Fragaria vesca HOM05D000001 ORTHO05D009988 1.5e-16 89.4 92 55.4
FAN28G1053 Fragaria x ananassa HOM05D001702 ORTHO05D009988 2.5e-16 88.6 91 56.0
FAN28G2152 Fragaria x ananassa HOM05D000001 ORTHO05D009988 2.5e-16 88.6 91 56.0
MD15G1335400 Malus domestica HOM05D000001 ORTHO05D009988 1.5e-13 79.3 78 52.6
Prupe.6G167400 Prunus persica HOM05D000001 ORTHO05D009988 6.4e-12 73.9 91 49.5
QL06p006986 Quercus lobata HOM05D000001 ORTHO05D009988 2.4e-11 72.0 78 47.4
Manes.15G018200 Manihot esculenta HOM05D000001 ORTHO05D009988 2.7e-10 68.6 78 47.4
Haze_01044 Corylus avellana HOM05D000001 ORTHO05D009988 1.0e-09 66.6 78 43.6
Gorai.006G075000 Gossypium raimondii HOM05D000001 ORTHO05D009988 2.3e-09 65.5 80 42.5
Phvul.003G100100 Phaseolus vulgaris HOM05D000001 ORTHO05D009988 2.3e-09 65.5 78 44.9
Glyma.07G252200 Glycine max HOM05D000001 ORTHO05D009988 3.9e-09 64.7 91 45.1
Cfa015507 Carpinus fangiana HOM05D000001 ORTHO05D009988 6.6e-09 63.9 78 41.0
Psat4g029600 Pisum sativum HOM05D000001 ORTHO05D009988 6.6e-09 63.9 79 43.0
Gohir.D09G060400 Gossypium hirsutum HOM05D000001 ORTHO05D009988 1.5e-08 62.8 80 41.2
Potri.010G020500 Populus trichocarpa HOM05D000001 ORTHO05D009988 1.5e-08 62.8 71 46.5
TPR.G14960 Trifolium pratense HOM05D000001 ORTHO05D009988 1.5e-08 62.8 79 43.0
Lalb_Chr13g0303911 Lupinus albus HOM05D000001 ORTHO05D009988 1.9e-08 62.4 78 43.6
TWI09G0683 Tripterygium wilfordii HOM05D000001 ORTHO05D009988 1.9e-08 62.4 89 38.2
Sabra10G0010300 Salix brachista HOM05D000001 ORTHO05D009988 2.5e-08 62.0 79 44.3
Lj4g0018879 Lotus japonicus HOM05D000001 ORTHO05D009988 3.3e-08 61.6 78 43.6
PGR042G2380 Punica granatum HOM05D000001 ORTHO05D009988 3.3e-08 61.6 90 40.0
Atru.chr4.2741 Acer truncatum HOM05D000001 ORTHO05D009988 4.3e-08 61.2 90 40.0
DCAR_027114 Daucus carota HOM05D001702 ORTHO05D001791 4.3e-08 61.2 90 40.0
CiPaw.01G154600 Carya illinoinensis HOM05D000001 ORTHO05D009988 7.3e-08 60.5 52 55.8
Thecc.04G275700 Theobroma cacao HOM05D000001 ORTHO05D009988 9.6e-08 60.1 80 40.0
VMungo1215G0264 Vigna mungo HOM05D000001 ORTHO05D009988 9.6e-08 60.1 69 44.9
Duzib151G0640 Durio zibethinus HOM05D000001 ORTHO05D009988 1.2e-07 59.7 79 40.5
Gohir.A09G061400 Gossypium hirsutum HOM05D000001 ORTHO05D009988 1.2e-07 59.7 80 40.0
Ca_21554_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009988 1.6e-07 59.3 74 43.2
Medtr4g118700 Medicago truncatula HOM05D000001 ORTHO05D009988 8.1e-07 57.0 73 42.5
Hma1.2p1_0823F.1_g224550 Hydrangea macrophylla HOM05D000001 ORTHO05D009988 1.1e-06 56.6 78 41.0
Dinv38334 Davidia involucrata HOM05D000160 ORTHO05D009988 1.4e-06 56.2 72 43.1
Aqoxy5G00633 Aquilegia oxysepala HOM05D000001 ORTHO05D009988 2.4e-06 55.5 80 40.0
CANSAT54G0431 Cannabis sativa HOM05D000001 ORTHO05D009988 2.4e-06 55.5 79 43.0
PSO832G4272 Papaver somniferum HOM05D000001 ORTHO05D009988 6.9e-06 53.9 79 36.7


User provided reference genes

Program Settings