Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0117981 Rosa chinensis HOM05D003495 ORTHO05D004159 1.9e-223 778.9 386 100.0
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 2.5e-220 768.5 385 99.0
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 1.2e-214 749.6 385 96.4
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.2e-214 749.6 385 96.4
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.2e-214 749.6 385 96.4
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.2e-214 749.6 385 96.4
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 3.5e-214 748.0 385 95.8
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 9.5e-212 740.0 385 94.8
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 2.8e-211 738.4 385 95.3
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 4.4e-209 731.1 385 94.0
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 2.9e-208 728.4 385 93.2
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 3.6e-203 711.4 385 90.1
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 1.1e-199 699.9 387 88.4
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 3.2e-199 698.4 385 88.1
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 5.4e-199 697.6 385 87.5
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 1.2e-198 696.4 385 89.1
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 3.5e-198 694.9 385 88.6
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 4.6e-198 694.5 385 88.1
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 4.6e-198 694.5 385 88.1
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 6.0e-198 694.1 385 88.8
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 3.0e-197 691.8 385 87.3
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 3.9e-197 691.4 385 87.3
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 3.9e-197 691.4 385 86.5
SGA_v2.0_scaffold148G36460 Striga asiatica HOM05D003495 ORTHO05D004159 5.1e-197 691.0 385 87.5
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 6.6e-197 690.6 385 87.0
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 8.7e-197 690.3 387 87.6
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 8.7e-197 690.3 385 87.3
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 1.1e-196 689.9 385 88.1
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 1.5e-196 689.5 385 86.5
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 1.9e-196 689.1 385 86.5
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 1.9e-196 689.1 385 87.0
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.9e-196 689.1 385 86.8
Solyc02g089370.2 Solanum lycopersicum HOM05D003495 ORTHO05D004159 4.3e-196 688.0 385 86.2
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 5.6e-196 687.6 386 86.8
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 1.3e-195 686.4 385 87.5
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 2.8e-195 685.3 386 86.8
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 3.6e-195 684.9 385 86.5
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 4.8e-195 684.5 386 86.5
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 4.8e-195 684.5 386 86.5
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 1.1e-194 683.3 385 86.0
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 3.1e-194 681.8 385 86.5
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 4.0e-194 681.4 385 86.2
Ca_20758_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 5.3e-194 681.0 385 86.2
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 9.0e-194 680.2 386 85.8
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 9.0e-194 680.2 385 87.5
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 1.5e-193 679.5 386 85.8
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 1.5e-193 679.5 386 86.0
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 2.0e-193 679.1 385 87.3
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 3.4e-193 678.3 386 85.5
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 4.5e-193 677.9 385 86.0
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 2.2e-192 675.6 386 85.2
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 2.2e-192 675.6 386 85.2
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 2.2e-192 675.6 385 86.0
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 2.9e-192 675.2 403 82.4
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 2.9e-192 675.2 386 85.5
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 4.9e-192 674.5 385 86.5
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 6.4e-192 674.1 385 85.5
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 6.4e-192 674.1 385 85.7
VMungo0464G1145 Vigna mungo HOM05D003495 ORTHO05D004159 8.4e-192 673.7 385 86.0
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 1.1e-191 673.3 386 85.0
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 1.1e-191 673.3 386 85.0
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 1.1e-191 673.3 386 85.0
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 1.1e-191 673.3 385 84.2
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 1.9e-191 672.5 385 85.5
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 2.4e-191 672.2 385 84.9
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 3.2e-191 671.8 385 85.7
Lsat_1_v5_gn_4_173941 Lactuca sativa HOM05D003495 ORTHO05D004159 4.2e-191 671.4 385 84.9
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 5.4e-191 671.0 385 86.0
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 7.1e-191 670.6 386 84.7
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 7.1e-191 670.6 385 84.4
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 9.3e-191 670.2 385 85.5
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 9.3e-191 670.2 385 86.0
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 2.1e-190 669.1 385 85.5
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 3.5e-190 668.3 385 84.9
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 3.5e-190 668.3 385 84.9
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 4.6e-190 667.9 385 85.2
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 4.6e-190 667.9 385 83.9
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 6.0e-190 667.5 385 83.6
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 1.3e-189 666.4 385 84.7
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 1.8e-189 666.0 385 83.6
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 1.8e-189 666.0 385 84.9
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 6.7e-189 664.1 385 83.1
COL.COLO4_24186 Corchorus olitorius HOM05D003495 ORTHO05D004159 6.7e-189 664.1 386 84.2
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 1.5e-188 662.9 385 84.7
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 1.5e-188 662.9 386 83.9
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 1.9e-188 662.5 385 83.4
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 3.3e-188 661.8 387 84.5
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 7.4e-188 660.6 386 83.7
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 3.7e-187 658.3 386 82.9
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 2.4e-186 655.6 368 86.1
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 2.4e-186 655.6 385 83.9
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 5.3e-186 654.4 386 82.6
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 9.0e-186 653.7 386 82.4
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 1.2e-185 653.3 385 83.1
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 1.3e-184 649.8 387 82.4
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 1.1e-183 646.7 385 83.1
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 7.1e-183 644.0 389 80.5
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 3.9e-181 638.3 385 80.0
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 6.7e-181 637.5 397 78.1
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 1.1e-180 636.7 386 81.1
Gohir.A01G142600 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.9e-180 636.0 386 81.1
CiPaw.03G081100 Carya illinoinensis HOM05D003495 ORTHO05D004159 2.4e-178 629.0 348 88.8
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 5.8e-177 624.4 386 79.5
unitig_748.g7269 Utricularia gibba HOM05D003495 ORTHO05D004159 2.9e-176 622.1 396 78.3
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 3.8e-176 621.7 389 78.7
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 1.2e-174 616.7 385 76.9
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 3.5e-174 615.1 397 76.3
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 6.7e-173 610.9 386 78.0
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 9.6e-172 607.1 389 77.4
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 1.8e-170 602.8 386 76.7
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 2.1e-166 589.3 386 74.9
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 3.9e-165 585.1 348 82.5
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 1.1e-164 583.6 385 77.4
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 1.7e-160 569.7 386 74.4
Gohir.D01G134500 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.7e-160 569.7 348 80.2
Hund20735 Selenicereus undatus HOM05D003495 ORTHO05D004159 3.8e-160 568.5 348 81.0
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.4e-159 566.6 389 71.5
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 7.2e-159 564.3 384 72.4
HPP92_025565 Vanilla planifolia HOM05D003495 ORTHO05D004159 1.2e-158 563.5 365 71.5
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 1.7e-155 553.1 391 68.8
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 3.3e-148 528.9 387 66.7
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 3.3e-148 528.9 385 71.4
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 3.7e-147 525.4 387 65.9
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 4.5e-145 518.5 390 65.1
Nn7g37976 Nelumbo nucifera HOM05D003495 ORTHO05D004159 6.5e-144 514.6 294 83.7
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 6.1e-142 508.1 390 64.1
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 2.3e-141 506.1 390 63.8
Gohir.D02G161860 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.2e-124 450.7 279 78.5
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 9.8e-108 394.4 385 56.9
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 2.9e-107 392.9 393 51.9
SHI33624 Sapria himalayana HOM05D003495 ORTHO05D004159 2.7e-89 333.2 262 64.1
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.6e-81 307.4 385 47.8
Actinidia36278 Actinidia chinensis HOM05D003495 ORTHO05D004159 1.9e-47 194.1 232 52.2
SHI33626 Sapria himalayana HOM05D003495 ORTHO05D004159 3.8e-35 153.3 92 79.3
Cre17.g703750 Chlamydomonas reinhardtii HOM05D003495 ORTHO05D004159 2.3e-32 144.1 465 28.8
Gohir.D02G161820 Gossypium hirsutum HOM05D003495 ORTHO05D004159 5.7e-31 139.4 71 94.4
CAN.G497.62 Capsicum annuum HOM05D003495 ORTHO05D004159 8.2e-22 109.0 154 46.8
Actinidia36277 Actinidia chinensis HOM05D003495 ORTHO05D004159 1.6e-17 94.7 56 80.4
CAN.G497.69 Capsicum annuum HOM05D003495 ORTHO05D004159 6.1e-17 92.8 49 87.8
MCO10G374 Micromonas commoda HOM05D003495 ORTHO05D004159 2.9e-11 73.9 273 24.9
arahy.Tifrunner.gnm1.ann1.BVET7T Arachis hypogaea HOM05D003495 ORTHO05D004159 2.1e-09 67.8 36 83.3
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 4.7e-09 66.6 38 76.3
Hund20736 Selenicereus undatus HOM05D003495 ORTHO05D004159 8.9e-08 62.4 36 75.0
SHI33623 Sapria himalayana HOM05D003495 ORTHO05D004159 2.0e-07 61.2 36 75.0


User provided reference genes

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