Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0117951 Rosa chinensis HOM05D003495 ORTHO05D004159 1.2e-180 636.3 320 100.0
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 7.5e-170 600.5 307 98.4
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 4.1e-160 568.2 301 95.3
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 1.7e-158 562.8 301 94.4
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.7e-158 562.8 301 94.4
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.7e-158 562.8 301 94.4
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 6.6e-158 560.8 307 90.9
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.9e-157 559.3 301 93.7
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 2.1e-156 555.8 307 90.2
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 2.8e-156 555.4 307 90.2
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 3.6e-156 555.1 301 93.7
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 1.0e-150 537.0 306 87.9
CiPaw.03G081100 Carya illinoinensis HOM05D003495 ORTHO05D004159 3.3e-149 531.9 308 87.3
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 1.2e-148 530.0 308 86.0
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 2.3e-147 525.8 308 86.0
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 6.4e-145 517.7 308 85.1
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 1.4e-144 516.5 308 84.7
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 1.9e-144 516.2 305 84.9
COL.COLO4_24186 Corchorus olitorius HOM05D003495 ORTHO05D004159 2.4e-144 515.8 308 85.1
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 2.4e-144 515.8 308 86.0
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 4.1e-144 515.0 307 84.7
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 5.4e-144 514.6 308 85.4
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 5.4e-144 514.6 307 85.3
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 7.1e-144 514.2 307 84.4
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 2.1e-143 512.7 308 85.1
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 1.7e-142 509.6 307 84.7
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 2.3e-142 509.2 308 84.7
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 3.0e-142 508.8 307 84.7
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 3.0e-142 508.8 307 82.7
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 3.9e-142 508.4 308 84.4
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 3.9e-142 508.4 307 84.0
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 3.9e-142 508.4 308 85.1
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 6.6e-142 507.7 308 83.8
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 8.6e-142 507.3 306 83.0
Gohir.D02G161820 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.1e-141 506.9 308 84.4
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 1.5e-141 506.5 310 83.2
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 2.5e-141 505.8 306 84.0
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 4.3e-141 505.0 308 82.8
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 1.2e-140 503.4 306 84.0
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 1.6e-140 503.1 306 83.3
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 1.6e-140 503.1 307 82.4
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 3.6e-140 501.9 307 81.1
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.1e-139 500.4 306 83.0
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.1e-139 500.4 306 83.0
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 1.4e-139 500.0 308 82.8
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 2.3e-139 499.2 308 83.1
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 3.1e-139 498.8 307 81.1
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 1.2e-138 496.9 307 82.1
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 1.5e-138 496.5 309 81.9
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 2.0e-138 496.1 307 83.1
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 3.4e-138 495.4 306 82.7
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 3.4e-138 495.4 308 82.1
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 7.6e-138 494.2 308 82.5
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 1.3e-137 493.4 310 80.6
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 3.8e-137 491.9 308 82.1
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 8.4e-137 490.7 307 79.5
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 1.4e-136 490.0 310 81.6
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 3.2e-136 488.8 309 80.6
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 7.1e-136 487.6 306 81.0
VMungo0464G1145 Vigna mungo HOM05D003495 ORTHO05D004159 7.1e-136 487.6 307 79.5
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 1.2e-135 486.9 307 80.8
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 1.2e-135 486.9 310 80.6
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 2.7e-135 485.7 307 79.8
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 6.0e-135 484.6 306 80.1
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 6.0e-135 484.6 306 80.7
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 1.3e-134 483.4 307 79.8
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 3.9e-134 481.9 308 78.9
Nitab4.5_0000154g0090 Nicotiana tabacum HOM05D003495 ORTHO05D004159 3.9e-134 481.9 306 79.7
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 3.3e-133 478.8 306 79.1
Gohir.D01G134500 Gossypium hirsutum HOM05D003495 ORTHO05D004159 5.6e-133 478.0 306 79.1
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 9.6e-133 477.2 307 79.5
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 1.2e-132 476.9 308 78.6
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 1.2e-132 476.9 308 77.6
Gohir.A01G142600 Gossypium hirsutum HOM05D003495 ORTHO05D004159 4.7e-132 474.9 306 78.8
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 8.1e-132 474.2 310 80.0
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 8.9e-131 470.7 306 77.1
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 2.0e-130 469.5 308 77.3
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 5.8e-130 468.0 308 77.3
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 5.8e-130 468.0 305 77.4
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 5.4e-128 461.5 332 75.0
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 7.1e-128 461.1 306 76.5
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 2.7e-127 459.1 307 76.9
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 7.8e-127 457.6 306 77.5
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 1.7e-126 456.4 306 77.5
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 8.7e-126 454.1 306 77.1
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 8.7e-126 454.1 306 77.1
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 8.7e-126 454.1 306 77.1
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 8.7e-126 454.1 306 77.1
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 1.5e-125 453.4 309 76.7
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 1.9e-125 453.0 310 75.5
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 2.5e-125 452.6 306 76.5
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 5.6e-125 451.4 320 72.8
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 1.3e-124 450.3 309 75.7
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 4.8e-124 448.4 319 72.7
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 4.8e-124 448.4 309 75.7
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 1.4e-123 446.8 309 75.1
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 2.4e-123 446.0 320 71.9
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 5.3e-123 444.9 309 74.8
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 5.3e-123 444.9 312 74.7
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 1.2e-122 443.7 309 76.7
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 1.5e-122 443.4 309 74.8
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 7.6e-122 441.0 309 73.8
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 9.9e-122 440.7 313 72.5
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 4.9e-121 438.3 253 85.8
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 7.1e-120 434.5 257 84.8
unitig_748.g7269 Utricularia gibba HOM05D003495 ORTHO05D004159 6.0e-119 431.4 310 74.2
Lsat_1_v5_gn_4_173921 Lactuca sativa HOM05D003495 ORTHO05D004159 1.9e-117 426.4 311 71.4
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 2.4e-115 419.5 305 71.1
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 1.2e-114 417.2 306 71.2
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 1.2e-114 417.2 306 71.2
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 1.7e-113 413.3 306 70.6
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 1.2e-111 407.1 306 70.3
HPP92_025565 Vanilla planifolia HOM05D003495 ORTHO05D004159 8.7e-110 401.0 306 68.3
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 1.9e-109 399.8 310 68.7
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 6.5e-105 384.8 311 66.9
Os02g0830900 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 2.3e-102 376.3 309 64.4
Hund20735 Selenicereus undatus HOM05D003495 ORTHO05D004159 8.2e-100 367.9 306 63.7
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 4.5e-98 362.1 315 61.9
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 2.7e-95 352.8 307 61.2
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 1.6e-92 343.6 306 64.1
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 1.6e-92 343.6 317 61.2
SHI33626 Sapria himalayana HOM05D003495 ORTHO05D004159 5.3e-91 338.6 307 59.6
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 2.0e-90 336.7 329 59.6
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 2.6e-90 336.3 323 59.8
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 4.5e-90 335.5 310 57.7
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 8.8e-86 321.2 324 57.1
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.7e-84 317.0 322 56.5
Ca_20757_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 1.1e-83 314.3 213 76.5
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 9.1e-83 311.2 322 54.3
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 5.7e-77 292.0 307 54.7
SEGI_11817 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 7.0e-67 258.5 306 52.9
Solyc02g089390.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 9.1e-59 231.5 153 78.4
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 1.4e-51 207.6 335 38.5
Psat6g133600 Pisum sativum HOM05D003495 ORTHO05D004159 4.7e-47 192.6 140 73.6
CAN.G497.63 Capsicum annuum HOM05D003495 ORTHO05D004159 1.2e-45 188.0 300 44.7
CAN.G497.68 Capsicum annuum HOM05D003495 ORTHO05D015025 6.4e-44 182.2 145 67.6
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 5.4e-35 152.5 161 57.1
Actinidia36279 Actinidia chinensis HOM05D003495 ORTHO05D004159 3.3e-16 90.1 87 58.6
BcaB08g36895 Brassica carinata HOM05D003495 ORTHO05D004159 2.5e-08 63.9 37 83.8
Cfa019719 Carpinus fangiana HOM05D000116 ORTHO05D000133 3.3e-08 63.5 49 65.3


User provided reference genes

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