Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 2.2e-48 195.3 96 100.0
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 2.6e-41 171.8 93 90.3
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 1.7e-40 169.1 93 87.1
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.2e-40 168.7 93 90.3
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.2e-40 168.7 93 90.3
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 6.3e-40 167.2 93 89.2
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 5.9e-38 160.6 93 83.9
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 5.9e-38 160.6 93 83.9
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 1.0e-37 159.8 93 79.6
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.3e-37 159.5 93 83.9
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 1.7e-37 159.1 93 79.6
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 1.7e-37 159.1 93 80.6
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 2.3e-37 158.7 93 80.6
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 3.9e-37 157.9 93 77.4
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 5.0e-37 157.5 93 77.4
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 5.0e-37 157.5 93 80.6
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 6.6e-37 157.1 93 80.6
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 8.6e-37 156.8 93 81.7
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 1.9e-36 155.6 93 80.6
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 2.5e-36 155.2 93 77.4
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 3.3e-36 154.8 93 76.3
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 4.3e-36 154.5 93 78.5
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 5.6e-36 154.1 93 76.3
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 5.6e-36 154.1 93 80.6
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 5.6e-36 154.1 95 75.8
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 7.3e-36 153.7 93 79.6
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 9.5e-36 153.3 93 75.3
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 9.5e-36 153.3 93 75.3
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 9.5e-36 153.3 93 78.5
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 1.2e-35 152.9 92 75.0
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 1.2e-35 152.9 93 75.3
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.2e-35 152.9 93 78.5
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 1.6e-35 152.5 93 79.6
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 2.8e-35 151.8 93 79.6
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 3.6e-35 151.4 93 74.2
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 3.6e-35 151.4 93 74.2
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 4.7e-35 151.0 93 76.3
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 4.7e-35 151.0 93 74.2
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 4.7e-35 151.0 93 75.3
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 4.7e-35 151.0 93 75.3
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 4.7e-35 151.0 93 77.4
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 6.1e-35 150.6 93 74.2
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 6.1e-35 150.6 93 74.2
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 8.0e-35 150.2 93 77.4
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 1.0e-34 149.8 93 74.2
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.0e-34 149.8 93 76.3
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 1.0e-34 149.8 93 76.3
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 3.1e-34 148.3 93 76.3
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 3.1e-34 148.3 93 73.1
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 3.1e-34 148.3 93 74.2
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 4.0e-34 147.9 93 72.0
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 6.8e-34 147.1 99 70.7
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 6.8e-34 147.1 99 70.7
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 6.8e-34 147.1 94 74.5
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 1.2e-33 146.4 93 74.2
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 2.0e-33 145.6 93 75.3
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 2.6e-33 145.2 93 75.3
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 2.6e-33 145.2 93 75.3
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 1.7e-32 142.5 93 72.0
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 1.7e-32 142.5 93 73.1
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 2.2e-32 142.1 93 71.0
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 2.9e-32 141.7 93 71.0
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 2.9e-32 141.7 93 72.0
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 2.9e-32 141.7 93 73.1
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 4.9e-32 141.0 93 74.2
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 6.4e-32 140.6 93 72.0
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 8.3e-32 140.2 93 69.9
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 1.1e-31 139.8 93 72.0
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 1.4e-31 139.4 93 71.0
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.9e-31 139.0 93 69.9
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.9e-31 139.0 93 71.0
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 2.4e-31 138.7 92 68.5
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 3.2e-31 138.3 93 68.8
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 7.0e-31 137.1 93 68.8
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 3.5e-30 134.8 92 70.7
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 4.6e-30 134.4 93 67.7
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 1.0e-29 133.3 89 70.8
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 1.0e-29 133.3 93 68.8
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 1.3e-29 132.9 93 66.7
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 1.3e-29 132.9 93 68.8
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 1.3e-29 132.9 89 68.5
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 1.7e-29 132.5 93 69.9
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 3.0e-29 131.7 93 65.6
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 5.0e-29 131.0 93 66.7
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 6.6e-29 130.6 93 66.7
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 8.6e-29 130.2 94 64.9
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 8.6e-29 130.2 93 64.5
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.1e-28 129.8 93 64.5
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 2.5e-28 128.6 92 66.3
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 3.3e-28 128.3 94 68.1
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 4.3e-28 127.9 94 63.8
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 5.6e-28 127.5 93 66.7
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 9.5e-28 126.7 93 63.4
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 1.2e-27 126.3 93 64.5
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 1.2e-27 126.3 93 64.5
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 1.2e-27 126.3 93 64.5
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.2e-27 126.3 93 63.4
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 1.6e-27 125.9 89 66.3
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 2.1e-27 125.6 92 67.4
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 3.6e-27 124.8 92 64.1
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 3.6e-27 124.8 93 62.4
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 8.0e-27 123.6 93 66.7
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 1.8e-26 122.5 93 63.4
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 2.0e-25 119.0 93 63.4
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 3.4e-25 118.2 88 65.9
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 9.8e-25 116.7 89 64.0
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 2.2e-24 115.5 89 62.9
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 2.2e-24 115.5 89 62.9
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 4.9e-24 114.4 93 60.2
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 4.9e-24 114.4 93 59.1
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 8.3e-24 113.6 92 62.0
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 1.4e-23 112.8 92 60.9
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 1.4e-23 112.8 93 59.1
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 2.4e-23 112.1 87 60.9
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 3.2e-23 111.7 87 60.9
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 4.1e-23 111.3 92 59.8
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 4.1e-23 111.3 92 58.7
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 7.1e-23 110.5 92 56.5
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 9.2e-23 110.2 93 57.0
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 1.6e-22 109.4 93 57.0
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.6e-22 109.4 142 45.1
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 2.7e-22 108.6 88 61.4
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 3.5e-22 108.2 87 58.6
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 3.5e-22 108.2 93 60.2
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 3.5e-22 108.2 92 57.6
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 4.6e-22 107.8 88 61.4
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 6.0e-22 107.5 92 59.8
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 6.0e-22 107.5 92 56.5
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 7.8e-22 107.1 104 52.9
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.0e-21 106.7 87 58.6
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 2.3e-21 105.5 88 59.1
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 2.3e-21 105.5 93 59.1
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 6.6e-21 104.0 74 64.9
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 8.6e-21 103.6 93 53.8
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 1.1e-20 103.2 91 57.1
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.5e-20 102.8 88 56.8
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 1.5e-20 102.8 93 54.8
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.5e-20 102.8 185 37.3
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 1.9e-20 102.4 87 58.6
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 2.5e-20 102.1 80 60.0
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 2.1e-19 99.0 61 72.1
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 2.1e-19 99.0 86 55.8
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 8.1e-19 97.1 92 52.2
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 1.1e-18 96.7 86 53.5
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 4.0e-18 94.7 71 60.6
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 8.9e-18 93.6 84 54.8
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 3.4e-17 91.7 71 64.8
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.7e-16 89.4 61 68.9
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 2.9e-16 88.6 72 55.6
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 4.9e-16 87.8 61 70.5
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 8.3e-16 87.0 90 54.4
PGSC0003DMG401004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 7.1e-15 84.0 59 66.1
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 2.1e-14 82.4 50 74.0
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 4.6e-14 81.3 88 43.2
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 3.0e-13 78.6 79 50.6
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 6.6e-13 77.4 45 80.0
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 1.9e-12 75.9 93 44.1
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 1.8e-10 69.3 70 51.4
PGSC0003DMG400020960 Solanum tuberosum HOM05D000219 ORTHO05D004649 5.8e-09 64.3 43 62.8
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 9.9e-09 63.5 37 78.4
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 2.2e-08 62.4 49 59.2
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 2.2e-08 62.4 40 72.5
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 3.8e-08 61.6 41 63.4
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 8.4e-08 60.5 45 57.8
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 8.4e-08 60.5 45 57.8
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 8.4e-08 60.5 45 57.8
Lj8A365T12 Lonicera japonica HOM05D000219 ORTHO05D004649 1.4e-07 59.7 36 72.2
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.4e-07 59.7 41 75.6
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.4e-07 59.7 70 50.0
BolC3t16144H Brassica oleracea HOM05D012973 ORTHO05D016770 1.9e-07 59.3 55 50.9
COL.COLO4_25028 Corchorus olitorius HOM05D000219 ORTHO05D004649 4.2e-07 58.2 43 62.8


User provided reference genes

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