Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 2.3e-251 871.7 415 100.0
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 2.7e-212 741.9 415 86.3
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 4.9e-198 694.5 412 80.3
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.5e-197 692.2 398 84.9
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 2.7e-196 688.7 411 79.3
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.3e-195 686.4 411 78.8
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.1e-192 674.9 411 78.6
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 5.3e-192 674.5 411 78.3
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 7.6e-191 670.6 372 87.1
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 1.6e-188 662.9 415 74.7
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.1e-176 621.7 411 74.0
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 7.7e-175 617.5 413 70.2
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 1.1e-173 613.6 415 68.7
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 2.1e-172 609.4 413 69.0
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 1.8e-171 606.3 414 68.4
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 4.8e-169 598.2 413 69.0
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 1.1e-168 597.0 415 68.0
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 5.9e-167 591.3 412 68.2
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 2.2e-166 589.3 413 66.3
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.5e-165 586.6 414 66.7
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 2.5e-165 585.9 414 66.4
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 7.2e-165 584.3 414 66.2
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 1.2e-164 583.6 412 65.3
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 1.2e-164 583.6 372 71.2
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.2e-164 583.6 415 66.0
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 2.1e-164 582.8 416 65.9
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 3.6e-164 582.0 413 65.6
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 1.4e-163 580.1 415 64.8
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.5e-162 576.6 411 65.5
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 3.3e-162 575.5 414 65.7
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 4.4e-162 575.1 414 65.9
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 3.7e-161 572.0 413 65.4
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 6.3e-161 571.2 413 65.6
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 3.5e-159 565.5 417 62.8
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 4.5e-159 565.1 413 62.7
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 1.0e-158 563.9 413 64.4
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 3.8e-158 562.0 368 69.6
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 1.1e-157 560.5 413 61.5
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 3.2e-157 558.9 419 61.1
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 4.2e-157 558.5 414 61.8
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 4.2e-157 558.5 418 61.2
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 4.2e-157 558.5 414 63.5
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 4.2e-157 558.5 416 62.7
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 7.2e-157 557.8 415 62.4
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 2.7e-156 555.8 411 63.3
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 2.7e-156 555.8 414 61.6
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 3.6e-156 555.4 420 63.8
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 4.7e-156 555.1 424 60.4
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 6.1e-156 554.7 413 61.5
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 1.4e-155 553.5 417 61.2
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 1.8e-155 553.1 422 60.9
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 1.8e-155 553.1 451 59.9
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 3.0e-155 552.4 438 61.0
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 3.0e-155 552.4 416 61.1
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 6.8e-155 551.2 415 61.2
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 6.8e-155 551.2 411 63.3
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 8.8e-155 550.8 414 61.4
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 1.5e-154 550.1 414 61.8
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 1.5e-154 550.1 416 62.5
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 4.4e-154 548.5 446 57.6
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 2.8e-153 545.8 423 61.2
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 6.3e-153 544.7 413 62.5
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 2.4e-152 542.7 413 63.7
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 2.4e-152 542.7 444 58.3
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 3.1e-152 542.3 412 61.4
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 3.1e-152 542.3 503 55.5
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 4.5e-151 538.5 416 61.5
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 7.7e-151 537.7 412 62.1
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 2.9e-150 535.8 447 57.9
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 1.1e-149 533.9 413 60.8
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 1.9e-149 533.1 413 59.6
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 2.5e-149 532.7 419 62.5
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 4.2e-149 531.9 414 59.7
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 9.4e-149 530.8 414 60.4
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 2.1e-148 529.6 441 57.4
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 2.1e-148 529.6 413 59.6
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 8.0e-148 527.7 369 64.5
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 2.3e-147 526.2 412 58.7
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 8.8e-147 524.2 412 58.7
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 1.5e-146 523.5 371 65.2
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 2.0e-146 523.1 414 58.7
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 2.2e-145 519.6 413 59.8
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 2.8e-145 519.2 408 58.6
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 8.3e-145 517.7 481 55.7
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 1.1e-144 517.3 413 57.9
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 1.1e-144 517.3 394 62.7
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 2.4e-144 516.2 413 58.4
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 5.4e-144 515.0 413 57.9
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 1.6e-143 513.5 420 58.8
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.7e-142 510.0 412 59.0
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 6.6e-142 508.1 339 68.4
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 8.6e-142 507.7 394 61.9
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 3.3e-141 505.8 413 58.8
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 6.8e-139 498.0 412 57.8
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 8.9e-139 497.7 392 60.5
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 2.6e-138 496.1 392 60.2
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 2.2e-137 493.0 371 65.0
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 8.3e-137 491.1 396 58.6
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 2.0e-135 486.5 412 56.6
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 9.5e-133 477.6 455 53.0
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 2.1e-132 476.5 369 62.1
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 6.8e-131 471.5 381 64.0
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 6.0e-127 458.4 365 59.5
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 1.1e-123 447.6 308 64.9
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 4.1e-112 409.1 289 64.0
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.6e-106 389.8 361 54.3
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 1.5e-101 374.0 302 59.9
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 1.6e-100 370.5 308 59.1
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 8.1e-100 368.2 414 44.7
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.1e-99 367.9 250 68.0
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 5.4e-96 355.5 305 56.1
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 1.3e-92 344.4 255 62.4
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 7.9e-87 325.1 256 58.6
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 5.1e-86 322.4 274 56.2
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 5.6e-85 318.9 238 62.6
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 7.4e-85 318.5 258 58.5
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 2.1e-84 317.0 258 58.5
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 5.3e-83 312.4 300 51.3
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 2.6e-82 310.1 188 75.0
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 2.9e-81 306.6 214 65.0
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 7.1e-80 302.0 259 56.4
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 1.0e-78 298.1 257 55.3
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 3.9e-78 296.2 360 41.9
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 8.7e-78 295.0 213 66.2
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 3.7e-76 289.7 255 55.7
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 4.8e-76 289.3 255 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 8.2e-76 288.5 246 56.1
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 2.6e-74 283.5 258 54.7
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 5.5e-72 275.8 224 59.4
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 1.6e-71 274.2 206 62.6
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 3.6e-71 273.1 236 55.5
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 1.0e-65 255.0 191 60.7
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 5.0e-65 252.7 186 67.7
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 2.5e-64 250.4 254 48.0
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 4.2e-64 249.6 259 47.9
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 6.7e-62 242.3 142 78.9
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 1.1e-59 235.0 155 74.2
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 1.4e-59 234.6 251 46.6
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 2.7e-55 220.3 166 59.0
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 3.0e-54 216.9 209 48.8
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.4e-51 208.0 174 56.9
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 4.1e-51 206.5 163 62.0
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 9.1e-51 205.3 278 45.3
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 3.8e-49 199.9 230 43.9
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 3.6e-47 193.4 215 46.5
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 3.7e-44 183.3 159 53.5
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 2.9e-41 173.7 110 70.0
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 4.2e-40 169.9 206 41.3
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 9.8e-37 158.7 181 42.0
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 7.7e-34 149.1 161 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 2.3e-33 147.5 131 55.7
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 1.8e-30 137.9 79 73.4
CAN.G555.5 Capsicum annuum HOM05D000219 ORTHO05D000137 4.4e-29 133.3 94 69.1
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.7e-28 131.3 102 60.8
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 2.8e-28 130.6 124 53.2
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 4.9e-28 129.8 112 50.9
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 7.0e-27 125.9 221 38.5
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 2.9e-25 120.6 103 58.3
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 1.4e-22 111.7 93 57.0
GSVIVG01006301001 Vitis vinifera HOM05D000026 ORTHO05D000127 2.0e-21 107.8 106 49.1
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 1.7e-20 104.8 54 87.0
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 4.1e-19 100.1 87 55.2
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.3e-17 95.1 81 55.6
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 2.3e-14 84.3 69 56.5
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 3.1e-14 84.0 94 47.9
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 6.8e-14 82.8 66 59.1
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 5.8e-13 79.7 58 63.8
Atru.chr10.1695 Acer truncatum HOM05D000219 ORTHO05D021059 1.7e-12 78.2 78 48.7
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 1.7e-12 78.2 106 42.5
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 8.3e-12 75.9 80 45.0
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 2.0e-10 71.2 61 54.1
Gohir.A03G040550 Gossypium hirsutum HOM05D000219 ORTHO05D021059 9.5e-08 62.4 68 54.4
A02p19800 Brassica napus HOM05D000219 ORTHO05D017689 1.2e-07 62.0 73 42.5
PGSC0003DMG400020960 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.6e-07 61.6 43 58.1
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 6.2e-07 59.7 47 61.7
Lj7A96T46 Lonicera japonica HOM05D000219 ORTHO05D004649 8.1e-07 59.3 42 64.3
A07p24800 Brassica napus HOM05D000219 ORTHO05D017689 1.4e-06 58.5 73 41.1
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 1.4e-06 58.5 42 61.9
BraA03t15335Z Brassica rapa HOM05D000219 ORTHO05D017689 1.4e-06 58.5 73 41.1
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 2.3e-06 57.8 46 56.5
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 2.3e-06 57.8 46 56.5
BolC3t16144H Brassica oleracea HOM05D012973 ORTHO05D016770 2.3e-06 57.8 40 62.5
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 2.3e-06 57.8 46 56.5
CARHR125220 Cardamine hirsuta HOM05D000219 ORTHO05D021059 2.3e-06 57.8 71 45.1
SHI31714 Sapria himalayana HOM05D000219 ORTHO05D004649 5.2e-06 56.6 28 85.7


User provided reference genes

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