Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0117081 Rosa chinensis HOM05D008407 ORTHO05D008048 9.6e-72 273.5 146 100.0
FvH4_1g22760 Fragaria vesca HOM05D008407 ORTHO05D008048 9.3e-59 230.3 148 85.1
FAN19G0490 Fragaria x ananassa HOM05D008407 ORTHO05D008048 9.3e-59 230.3 148 85.1
FAN26G1845 Fragaria x ananassa HOM05D008407 ORTHO05D008048 9.3e-59 230.3 148 85.1
FAN28G0580 Fragaria x ananassa HOM05D008407 ORTHO05D008048 7.9e-58 227.3 148 83.8
FAN23G0665 Fragaria x ananassa HOM05D008407 ORTHO05D008048 6.7e-57 224.2 148 83.1
Prupe.6G170400 Prunus persica HOM05D008407 ORTHO05D008048 5.0e-36 154.8 137 65.0
MD01G1020600 Malus domestica HOM05D008407 ORTHO05D008048 3.2e-35 152.1 146 60.3
QL06p031965 Quercus lobata HOM05D008407 ORTHO05D008048 9.4e-27 124.0 152 48.0
Lj4g0011503 Lotus japonicus HOM05D008407 ORTHO05D008048 2.6e-21 105.9 154 48.7
Gohir.A02G135700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 3.4e-21 105.5 147 44.9
Duzib147G1678 Durio zibethinus HOM05D008407 ORTHO05D008048 1.7e-20 103.2 149 43.6
TPR.G2192 Trifolium pratense HOM05D008407 ORTHO05D008048 2.2e-20 102.8 149 47.7
Haze_25045 Corylus avellana HOM05D008407 ORTHO05D008048 1.6e-18 96.7 154 43.5
Haze_25053 Corylus avellana HOM05D008407 ORTHO05D008048 2.1e-18 96.3 154 42.9
TWI79G0560 Tripterygium wilfordii HOM05D008407 ORTHO05D008048 2.1e-18 96.3 139 46.0
Cpa.g.sc145.13 Carica papaya HOM05D008407 ORTHO05D008048 5.2e-17 91.7 138 40.6
Dinv19478 Davidia involucrata HOM05D008407 ORTHO05D008048 6.3e-15 84.7 156 42.3
Gohir.D03G046566 Gossypium hirsutum HOM05D008407 ORTHO05D008048 8.2e-15 84.3 147 40.1
Gorai.003G047700 Gossypium raimondii HOM05D008407 ORTHO05D008048 8.2e-15 84.3 147 40.1
Manes.13G079700 Manihot esculenta HOM05D008407 ORTHO05D008048 8.2e-15 84.3 132 40.2
COL.COLO4_03583 Corchorus olitorius HOM05D008407 ORTHO05D008048 3.1e-14 82.4 144 39.6
CiPaw.03G133800 Carya illinoinensis HOM05D008407 ORTHO05D008048 5.3e-14 81.6 113 48.7
PGR102G1446 Punica granatum HOM05D008407 ORTHO05D008048 5.3e-14 81.6 142 37.3
Hma1.2p1_0375F.1_g138780 Hydrangea macrophylla HOM05D008407 ORTHO05D008048 7.0e-14 81.3 116 45.7
PGSC0003DMG400031207 Solanum tuberosum HOM05D017188 ORTHO05D008048 7.0e-14 81.3 142 38.0
Psat7g050960 Pisum sativum HOM05D008407 ORTHO05D008048 9.1e-14 80.9 134 43.3
ClCG01G016050 Citrullus lanatus HOM05D008407 ORTHO05D008048 4.5e-13 78.6 132 37.1
Cfa002761 Carpinus fangiana HOM05D008407 ORTHO05D008048 5.9e-13 78.2 154 37.7
Sabra05G0069800 Salix brachista HOM05D008407 ORTHO05D008048 7.7e-13 77.8 141 36.9
CANSAT01G0822 Cannabis sativa HOM05D008407 ORTHO05D008048 1.0e-12 77.4 114 39.5
Lalb_Chr07g0184781 Lupinus albus HOM05D008407 ORTHO05D008048 2.9e-12 75.9 149 36.9
arahy.Tifrunner.gnm1.ann1.IW8T8H Arachis hypogaea HOM05D004317 ORTHO05D005031 3.8e-12 75.5 115 41.7
Thecc.01G114300 Theobroma cacao HOM05D008407 ORTHO05D008048 3.8e-12 75.5 145 35.2
arahy.Tifrunner.gnm1.ann1.18RYE7 Arachis hypogaea HOM05D008407 ORTHO05D008048 2.5e-11 72.8 138 37.7
Duzib187G2009 Durio zibethinus HOM05D008407 ORTHO05D008048 4.2e-11 72.0 145 34.5
arahy.Tifrunner.gnm1.ann1.FI1JAT Arachis hypogaea HOM05D008407 ORTHO05D008048 7.2e-11 71.2 129 39.5
Glyma.05G184300 Glycine max HOM05D008407 ORTHO05D008048 7.2e-11 71.2 113 42.5
Medtr8g091950 Medicago truncatula HOM05D008407 ORTHO05D008048 7.2e-11 71.2 112 44.6
arahy.Tifrunner.gnm1.ann1.80DI5I Arachis hypogaea HOM05D008407 ORTHO05D008048 9.4e-11 70.9 115 40.9
COL.COLO4_11001 Corchorus olitorius HOM05D008407 ORTHO05D008048 1.6e-10 70.1 140 35.7
Potri.005G085000 Populus trichocarpa HOM05D008407 ORTHO05D008048 1.0e-09 67.4 114 36.0
Nitab4.5_0004977g0060 Nicotiana tabacum HOM05D017188 ORTHO05D008048 2.3e-09 66.2 123 34.1
Manes.14G007700 Manihot esculenta HOM05D009551 ORTHO05D008048 6.7e-09 64.7 150 33.3
Sed0000570 Sechium edule HOM05D008407 ORTHO05D008048 1.5e-08 63.5 131 31.3
Nitab4.5_0004378g0030 Nicotiana tabacum HOM05D017188 ORTHO05D008048 4.4e-08 62.0 107 29.9
Phvul.002G265200 Phaseolus vulgaris HOM05D008407 ORTHO05D008048 7.5e-08 61.2 126 36.5
MELO3C007475.2 Cucumis melo HOM05D008407 ORTHO05D008048 1.3e-07 60.5 112 34.8
CARHR278830 Cardamine hirsuta HOM05D011184 ORTHO05D008048 1.7e-07 60.1 146 34.9
Gohir.A11G053700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 2.8e-07 59.3 134 32.1
CsaV3_6G042330 Cucumis sativus L. HOM05D008407 ORTHO05D008048 4.8e-07 58.5 107 34.6
Nitab4.5_0000818g0160 Nicotiana tabacum HOM05D017188 ORTHO05D008048 6.3e-07 58.2 111 31.5
Gohir.D11G231800 Gossypium hirsutum HOM05D008407 ORTHO05D008048 8.2e-07 57.8 110 34.5
Gorai.007G244900 Gossypium raimondii HOM05D008407 ORTHO05D008048 8.2e-07 57.8 104 35.6
Nn6g33608 Nelumbo nucifera HOM05D017078 ORTHO05D018417 1.1e-06 57.4 141 32.6
Gohir.A11G197700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 1.4e-06 57.0 137 33.6
AT1G16850 Arabidopsis thaliana HOM05D009551 ORTHO05D008048 2.4e-06 56.2 126 34.1
A06p12760 Brassica napus HOM05D009551 ORTHO05D008048 3.1e-06 55.8 91 39.6
BraA06t24436Z Brassica rapa HOM05D009551 ORTHO05D008048 3.1e-06 55.8 91 39.6
Sp2g27900 Schrenkiella parvula HOM05D011184 ORTHO05D008048 3.1e-06 55.8 94 38.3
BcaC05g25541 Brassica carinata HOM05D009551 ORTHO05D008048 4.1e-06 55.5 94 39.4
C05p15070 Brassica napus HOM05D009551 ORTHO05D008048 4.1e-06 55.5 94 39.4
BolC5t30222H Brassica oleracea HOM05D009551 ORTHO05D008048 4.1e-06 55.5 94 39.4
Carub.0008s2565 Capsella rubella HOM05D011184 ORTHO05D008048 4.1e-06 55.5 136 30.9
BcaB02g06671 Brassica carinata HOM05D009551 ORTHO05D008048 5.3e-06 55.1 94 39.4
Sp1g14990 Schrenkiella parvula HOM05D009551 ORTHO05D008048 5.3e-06 55.1 103 38.8
Carub.0001s1659 Capsella rubella HOM05D009551 ORTHO05D008048 9.1e-06 54.3 125 32.8


User provided reference genes

Program Settings