Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0117061 Rosa chinensis HOM05D001050 ORTHO05D008289 1.7e-28 128.6 67 100.0
RcHm_v2.0_Chr4g0405281 Rosa chinensis HOM05D001050 ORTHO05D008289 6.9e-17 90.1 56 85.7
Prupe.1G100700 Prunus persica HOM05D001050 ORTHO05D008289 9.0e-17 89.7 56 83.9
Atru.chr7.414 Acer truncatum HOM05D001050 ORTHO05D008289 1.5e-16 89.0 56 78.6
MELO3C031521.2 Cucumis melo HOM05D001050 ORTHO05D008289 3.4e-16 87.8 56 80.4
MD16G1259300 Malus domestica HOM05D001050 ORTHO05D008289 4.5e-16 87.4 56 82.1
Manes.06G032800 Manihot esculenta HOM05D001050 ORTHO05D008289 4.5e-16 87.4 56 80.4
FvH4_4g08740 Fragaria vesca HOM05D001050 ORTHO05D008289 7.6e-16 86.7 56 82.1
FAN12G1960 Fragaria x ananassa HOM05D001050 ORTHO05D008289 7.6e-16 86.7 56 82.1
FAN17G0516 Fragaria x ananassa HOM05D001050 ORTHO05D008289 7.6e-16 86.7 56 82.1
FAN22G1319 Fragaria x ananassa HOM05D001050 ORTHO05D008289 7.6e-16 86.7 56 82.1
QL02p094578 Quercus lobata HOM05D001050 ORTHO05D008289 9.9e-16 86.3 56 80.4
GSVIVG01023711001 Vitis vinifera HOM05D001050 ORTHO05D008289 1.3e-15 85.9 56 76.8
CANSAT11G2532 Cannabis sativa HOM05D001050 ORTHO05D008289 2.2e-15 85.1 56 78.6
Lj4g0004322 Lotus japonicus HOM05D001050 ORTHO05D008289 2.2e-15 85.1 52 82.7
Glyma.17G070200 Glycine max HOM05D001050 ORTHO05D008289 2.9e-15 84.7 52 82.7
Lalb_Chr13g0300631 Lupinus albus HOM05D001050 ORTHO05D008289 2.9e-15 84.7 52 82.7
Potri.018G101200 Populus trichocarpa HOM05D001050 ORTHO05D008289 2.9e-15 84.7 56 76.8
Sabra18G0087100 Salix brachista HOM05D001050 ORTHO05D008289 2.9e-15 84.7 56 76.8
Sed0007478 Sechium edule HOM05D001050 ORTHO05D008289 2.9e-15 84.7 56 78.6
ClCG11G012710 Citrullus lanatus HOM05D001050 ORTHO05D008289 3.8e-15 84.3 56 78.6
Ciclev10008722m.g Citrus clementina HOM05D001050 ORTHO05D008289 3.8e-15 84.3 52 82.7
Cc06_g14300 Coffea canephora HOM05D001050 ORTHO05D008289 3.8e-15 84.3 64 71.9
CsaV3_2G007770 Cucumis sativus L. HOM05D001050 ORTHO05D008289 3.8e-15 84.3 56 78.6
Dinv41326 Davidia involucrata HOM05D001050 ORTHO05D008289 3.8e-15 84.3 52 82.7
CAN.G1190.10 Capsicum annuum HOM05D001050 ORTHO05D008289 4.9e-15 84.0 52 82.7
Cfa020764 Carpinus fangiana HOM05D001050 ORTHO05D008289 4.9e-15 84.0 56 78.6
Peaxi162Scf00038g00328 Petunia axillaris HOM05D001050 ORTHO05D008289 4.9e-15 84.0 52 82.7
Solyc07g006120.3 Solanum lycopersicum HOM05D001050 ORTHO05D008289 4.9e-15 84.0 52 82.7
PGSC0003DMG400011161 Solanum tuberosum HOM05D001050 ORTHO05D008289 4.9e-15 84.0 52 82.7
CiPaw.15G162900 Carya illinoinensis HOM05D001050 ORTHO05D008289 8.4e-15 83.2 52 80.8
Rhsim03G0260300 Rhododendron simsii HOM05D001050 ORTHO05D008289 8.4e-15 83.2 52 80.8
Glyma.02G207500 Glycine max HOM05D001050 ORTHO05D008289 1.1e-14 82.8 52 80.8
Medtr4g130190 Medicago truncatula HOM05D001050 ORTHO05D008289 1.1e-14 82.8 52 78.8
Nitab4.5_0001036g0050 Nicotiana tabacum HOM05D001050 ORTHO05D008289 1.1e-14 82.8 52 80.8
Nitab4.5_0002545g0120 Nicotiana tabacum HOM05D001050 ORTHO05D008289 1.1e-14 82.8 52 80.8
Psat0s2826g0080 Pisum sativum HOM05D001050 ORTHO05D008289 1.1e-14 82.8 52 78.8
Aqoxy5G01192 Aquilegia oxysepala HOM05D001050 ORTHO05D008289 1.4e-14 82.4 56 75.0
arahy.Tifrunner.gnm1.ann1.J6ADBZ Arachis hypogaea HOM05D001050 ORTHO05D008289 1.4e-14 82.4 56 76.8
TAR625G0323 Trochodendron aralioides HOM05D001050 ORTHO05D008289 1.4e-14 82.4 52 82.7
TWI34G0722 Tripterygium wilfordii HOM05D001050 ORTHO05D008289 1.9e-14 82.0 56 73.2
Nn2g12504 Nelumbo nucifera HOM05D001050 ORTHO05D008289 2.4e-14 81.6 56 75.0
Gohir.A05G345900 Gossypium hirsutum HOM05D001050 ORTHO05D008289 3.2e-14 81.3 56 73.2
DCAR_024733 Daucus carota HOM05D001050 ORTHO05D008289 4.2e-14 80.9 52 78.8
Rhsim03G0260200 Rhododendron simsii HOM05D001050 ORTHO05D008289 4.2e-14 80.9 52 78.8
Gohir.D04G087400 Gossypium hirsutum HOM05D001050 ORTHO05D008289 5.5e-14 80.5 56 73.2
Gorai.012G097500 Gossypium raimondii HOM05D001050 ORTHO05D008289 5.5e-14 80.5 56 73.2
Lsat_1_v5_gn_7_50861 Lactuca sativa HOM05D001050 ORTHO05D008289 5.5e-14 80.5 52 82.7
Phvul.003G152800 Phaseolus vulgaris HOM05D001050 ORTHO05D008289 5.5e-14 80.5 56 75.0
Sopen07g002230 Solanum pennellii HOM05D001050 ORTHO05D008289 5.5e-14 80.5 52 80.8
PGR142G3225 Punica granatum HOM05D001050 ORTHO05D008289 9.3e-14 79.7 56 71.4
SGA_v2.0_scaffold46G17358 Striga asiatica HOM05D001050 ORTHO05D008289 9.3e-14 79.7 52 76.9
TPR.G24846 Trifolium pratense HOM05D001050 ORTHO05D008289 9.3e-14 79.7 52 76.9
Ah.09g228640 Amaranthus hybridus HOM05D001050 ORTHO05D008289 1.2e-13 79.3 51 76.5
MBI15_g26078_MAGBIO Magnolia biondii HOM05D001050 ORTHO05D008289 1.6e-13 79.0 52 73.1
SalBow1G8460 Salvia bowleyana HOM05D001050 ORTHO05D008289 2.1e-13 78.6 52 75.0
vmacro01001 Vaccinium macrocarpon HOM05D001050 ORTHO05D008289 2.1e-13 78.6 52 78.8
BcaNung00562 Brassica carinata HOM05D001050 ORTHO05D008289 2.7e-13 78.2 56 71.4
A03p59920 Brassica napus HOM05D001050 ORTHO05D008289 2.7e-13 78.2 56 71.4
C07p57980 Brassica napus HOM05D001050 ORTHO05D008289 2.7e-13 78.2 56 71.4
BolC7t46256H Brassica oleracea HOM05D001050 ORTHO05D008289 2.7e-13 78.2 56 71.4
BraA03t15049Z Brassica rapa HOM05D001050 ORTHO05D008289 2.7e-13 78.2 56 71.4
COL.COLO4_36563 Corchorus olitorius HOM05D001050 ORTHO05D008289 2.7e-13 78.2 56 71.4
Duzib168G0517 Durio zibethinus HOM05D001050 ORTHO05D008289 2.7e-13 78.2 52 76.9
Migut.K00292 Erythranthe guttata HOM05D001050 ORTHO05D008289 2.7e-13 78.2 52 76.9
THA.LOC104803529 Tarenaya hassleriana HOM05D001050 ORTHO05D008289 2.7e-13 78.2 56 71.4
Thecc.09G155900 Theobroma cacao HOM05D001050 ORTHO05D008289 2.7e-13 78.2 56 71.4
Carub.0007s1007 Capsella rubella HOM05D001050 ORTHO05D008289 3.5e-13 77.8 64 65.6
CARHR238400 Cardamine hirsuta HOM05D001050 ORTHO05D008289 3.5e-13 77.8 64 65.6
Thhalv10025790m.g Eutrema salsugineum HOM05D001050 ORTHO05D008289 3.5e-13 77.8 64 65.6
Sp7g28400 Schrenkiella parvula HOM05D001050 ORTHO05D008289 3.5e-13 77.8 64 65.6
Ca_21159_v3 Cicer arietinum L. HOM05D001050 ORTHO05D008289 4.6e-13 77.4 52 73.1
PSO063G3509 Papaver somniferum HOM05D001050 ORTHO05D008289 4.6e-13 77.4 52 75.0
PSO782G2474 Papaver somniferum HOM05D001050 ORTHO05D008289 4.6e-13 77.4 52 75.0
HPP92_015862 Vanilla planifolia HOM05D001050 ORTHO05D008289 4.6e-13 77.4 52 73.1
HPP92_015866 Vanilla planifolia HOM05D001050 ORTHO05D008289 4.6e-13 77.4 52 73.1
VMungo1215G0246 Vigna mungo HOM05D001050 ORTHO05D008289 4.6e-13 77.4 56 73.2
AL7G21630 Arabidopsis lyrata HOM05D001050 ORTHO05D008289 6.0e-13 77.0 64 65.6
AT4G30510 Arabidopsis thaliana HOM05D001050 ORTHO05D008289 6.0e-13 77.0 64 65.6
CSS0018567 Camellia sinensis var. sinensis HOM05D001050 ORTHO05D008289 6.0e-13 77.0 56 69.6
AUR62028390 Chenopodium quinoa HOM05D001050 ORTHO05D008289 6.0e-13 77.0 51 72.5
ECA240G3751 Erigeron canadensis HOM05D001050 ORTHO05D008289 6.0e-13 77.0 64 65.6
Sc14g0001020 Simmondsia chinensis HOM05D001050 ORTHO05D008289 7.9e-13 76.6 51 74.5
Aa31LG2G20000 Aethionema arabicum HOM05D001050 ORTHO05D008289 1.0e-12 76.3 52 75.0
SEGI_41321 Sequoiadendron giganteum HOM05D001050 ORTHO05D008289 1.0e-12 76.3 56 66.1
Duzib187G0157 Durio zibethinus HOM05D001050 ORTHO05D008289 1.3e-12 75.9 56 69.6
Hund26419 Selenicereus undatus HOM05D001050 ORTHO05D008289 1.3e-12 75.9 52 71.2
Oeu027624.1 Olea europaea HOM05D001050 ORTHO05D008289 1.8e-12 75.5 46 82.6
GSVIVG01037906001 Vitis vinifera HOM05D001050 ORTHO05D008289 1.8e-12 75.5 56 69.6
DCAR_031935 Daucus carota HOM05D001050 ORTHO05D008289 2.3e-12 75.1 52 71.2
HanXRQChr09g0244701 Helianthus annuus HOM05D001050 ORTHO05D008289 2.3e-12 75.1 52 76.9
EL10Ac8g18887 Beta vulgaris HOM05D001050 ORTHO05D008289 3.0e-12 74.7 51 72.5
unitig_0.g2692 Utricularia gibba HOM05D001050 ORTHO05D008289 3.0e-12 74.7 53 73.6
ATR0580G127 Amborella trichopoda HOM05D001050 ORTHO05D008289 3.9e-12 74.3 52 71.2
MSTRG.27597 Avicennia marina HOM05D001050 ORTHO05D008289 3.9e-12 74.3 52 71.2
Duzib187G1651 Durio zibethinus HOM05D001050 ORTHO05D008289 5.1e-12 73.9 56 67.9
AUR62039769 Chenopodium quinoa HOM05D001050 ORTHO05D008289 6.7e-12 73.6 51 70.6
Zm00001eb257610 Zea mays HOM05D001050 ORTHO05D008289 9.6e-11 69.7 56 60.7
SGA_v2.0_scaffold355G49781 Striga asiatica HOM05D001050 ORTHO05D008289 1.3e-10 69.3 68 58.8
Pp3c7_8510 Physcomitrium patens HOM05D001050 ORTHO05D008289 8.2e-10 66.6 56 60.7
Cre10.g457550 Chlamydomonas reinhardtii HOM05D001050 ORTHO05D008289 3.8e-07 57.8 56 50.0
Os02g0791800 Oryza sativa ssp. japonica HOM05D001050 ORTHO05D008289 6.5e-07 57.0 51 52.9
MCO09G116 Micromonas commoda HOM05D001050 ORTHO05D008289 1.1e-06 56.2 51 51.0
Mapoly0027s0044 Marchantia polymorpha HOM05D001050 ORTHO05D008289 9.3e-06 53.1 56 51.8


User provided reference genes

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