Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0116941 Rosa chinensis HOM05D021305 ORTHO05D010102 7.0e-101 370.5 179 100.0
RcHm_v2.0_Chr4g0439061 Rosa chinensis HOM05D021305 ORTHO05D347464 1.3e-51 206.8 129 82.2
RcHm_v2.0_Chr4g0417091 Rosa chinensis HOM05D013926 ORTHO05D344408 7.7e-31 137.9 169 47.9
RcHm_v2.0_Chr7g0185391 Rosa chinensis HOM05D013926 ORTHO05D020985 9.1e-16 87.8 103 51.5
FAN12G1423 Fragaria x ananassa HOM05D006059 ORTHO05D010613 3.5e-15 85.9 114 46.5
RcHm_v2.0_Chr6g0279821 Rosa chinensis HOM05D006059 ORTHO05D010613 5.9e-15 85.1 99 43.4
FvH4_3g36310 Fragaria vesca HOM05D006059 ORTHO05D000610 1.3e-14 84.0 110 46.4
RcHm_v2.0_Chr5g0011621 Rosa chinensis HOM05D013926 ORTHO05D020985 1.7e-14 83.6 152 40.1
RcHm_v2.0_Chr5g0046641 Rosa chinensis HOM05D021305 ORTHO05D344348 2.9e-14 82.8 88 53.4
RcHm_v2.0_Chr2g0161601 Rosa chinensis HOM05D006059 ORTHO05D010613 3.8e-14 82.4 105 41.9
RcHm_v2.0_Chr4g0388241 Rosa chinensis HOM05D013926 ORTHO05D020985 5.0e-14 82.0 103 47.6
RcHm_v2.0_Chr7g0195521 Rosa chinensis HOM05D013926 ORTHO05D020985 5.0e-14 82.0 103 47.6
FAN11G1542 Fragaria x ananassa HOM05D006059 ORTHO05D210510 6.5e-14 81.6 96 47.9
FAN02G0158 Fragaria x ananassa HOM05D006059 ORTHO05D207876 1.1e-13 80.9 146 41.1
FAN06G2872 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.1e-13 80.9 114 45.6
RcHm_v2.0_Chr2g0175631 Rosa chinensis HOM05D013926 ORTHO05D020985 1.5e-13 80.5 103 46.6
RcHm_v2.0_Chr5g0057351 Rosa chinensis HOM05D006059 ORTHO05D010613 1.5e-13 80.5 105 41.9
FvH4_6g48101 Fragaria vesca HOM05D006059 ORTHO05D198592 2.5e-13 79.7 96 51.0
FAN25G3455 Fragaria x ananassa HOM05D006059 ORTHO05D207604 4.2e-13 79.0 147 39.5
FAN27G2436 Fragaria x ananassa HOM05D006059 ORTHO05D010613 9.4e-13 77.8 147 38.8
RcHm_v2.0_Chr7g0227101 Rosa chinensis HOM05D006059 ORTHO05D010613 9.4e-13 77.8 97 43.3
FAN18G3353 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.2e-12 77.4 147 38.8
FvH4_6g18410 Fragaria vesca HOM05D006059 ORTHO05D010613 2.7e-12 76.3 116 44.8
FAN14G3910 Fragaria x ananassa HOM05D006059 ORTHO05D010613 3.6e-12 75.9 115 44.3
FAN09G3528 Fragaria x ananassa HOM05D006059 ORTHO05D010613 4.7e-12 75.5 146 37.0
FvH4_5g18320 Fragaria vesca HOM05D006059 ORTHO05D010613 6.1e-12 75.1 102 47.1
FAN03G3178 Fragaria x ananassa HOM05D006059 ORTHO05D022634 6.1e-12 75.1 90 47.8
FAN06G3421 Fragaria x ananassa HOM05D006059 ORTHO05D010613 6.1e-12 75.1 102 47.1
FAN14G1746 Fragaria x ananassa HOM05D006059 ORTHO05D010613 6.1e-12 75.1 111 45.0
RcHm_v2.0_Chr4g0398671 Rosa chinensis HOM05D000003 ORTHO05D010102 6.1e-12 75.1 52 67.3
RcHm_v2.0_Chr5g0068051 Rosa chinensis HOM05D000642 ORTHO05D000483 6.1e-12 75.1 71 56.3
FAN16G0265 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.0e-11 74.3 102 47.1
FvH4_6g02080 Fragaria vesca HOM05D006059 ORTHO05D022634 1.4e-11 73.9 101 45.5
FAN02G0790 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.4e-11 73.9 97 48.5
FAN13G2239 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.4e-11 73.9 97 48.5
FAN14G0698 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.4e-11 73.9 102 46.1
FAN03G3436 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.8e-11 73.6 102 46.1
FAN14G3214 Fragaria x ananassa HOM05D006059 ORTHO05D010613 3.0e-11 72.8 126 41.3
FAN09G3980 Fragaria x ananassa HOM05D006059 ORTHO05D022634 4.0e-11 72.4 101 45.5
FAN05G3551 Fragaria x ananassa HOM05D006059 ORTHO05D202697 8.8e-11 71.2 72 54.2
FAN10G3573 Fragaria x ananassa HOM05D006059 ORTHO05D019147 8.8e-11 71.2 135 40.0
FAN11G1312 Fragaria x ananassa HOM05D006059 ORTHO05D010613 8.8e-11 71.2 102 46.1
FAN03G2752 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.2e-10 70.9 93 47.3
FvH4_5g36190 Fragaria vesca HOM05D006059 ORTHO05D046011 1.5e-10 70.5 146 34.2
FAN05G2015 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.5e-10 70.5 102 44.1
FAN18G2462 Fragaria x ananassa HOM05D006059 ORTHO05D010613 2.0e-10 70.1 102 45.1
FAN25G3073 Fragaria x ananassa HOM05D006059 ORTHO05D022634 3.4e-10 69.3 90 45.6
FvH4_5g09320 Fragaria vesca HOM05D006059 ORTHO05D010613 4.4e-10 68.9 82 47.6
FAN10G4265 Fragaria x ananassa HOM05D006059 ORTHO05D022634 5.7e-10 68.6 81 50.6
RcHm_v2.0_Chr5g0032611 Rosa chinensis HOM05D021305 ORTHO05D341457 5.7e-10 68.6 58 62.1
FAN24G2449 Fragaria x ananassa HOM05D006059 ORTHO05D207803 1.7e-09 67.0 80 50.0
FAN12G1586 Fragaria x ananassa HOM05D006059 ORTHO05D010613 3.7e-09 65.9 94 46.8
FAN19G3119 Fragaria x ananassa HOM05D006059 ORTHO05D022634 3.7e-09 65.9 101 41.6
FAN01G0864 Fragaria x ananassa HOM05D006059 ORTHO05D019147 6.3e-09 65.1 81 44.4
FvH4_3g21341 Fragaria vesca HOM05D008097 ORTHO05D010102 1.8e-08 63.5 52 63.5
FAN16G0608 Fragaria x ananassa HOM05D008097 ORTHO05D010102 1.8e-08 63.5 52 63.5
FAN24G1586 Fragaria x ananassa HOM05D008097 ORTHO05D010102 1.8e-08 63.5 52 63.5
FAN25G3685 Fragaria x ananassa HOM05D008097 ORTHO05D010102 1.8e-08 63.5 52 63.5
FAN25G2016 Fragaria x ananassa HOM05D008097 ORTHO05D010102 2.4e-08 63.2 51 62.7
FAN03G2020 Fragaria x ananassa HOM05D008097 ORTHO05D010102 3.1e-08 62.8 52 61.5
FAN17G1384 Fragaria x ananassa HOM05D006059 ORTHO05D201010 3.1e-08 62.8 110 41.8
RcHm_v2.0_Chr1g0363721 Rosa chinensis HOM05D018137 ORTHO05D343934 3.1e-08 62.8 89 42.7
FvH4_4g31671 Fragaria vesca HOM05D008097 ORTHO05D010102 4.1e-08 62.4 48 66.7
FAN18G2895 Fragaria x ananassa HOM05D006059 ORTHO05D010613 7.0e-08 61.6 85 44.7
FAN25G1404 Fragaria x ananassa HOM05D006059 ORTHO05D010613 2.0e-07 60.1 66 48.5
FAN05G3127 Fragaria x ananassa HOM05D006059 ORTHO05D208470 4.5e-07 58.9 119 37.8
FAN02G0134 Fragaria x ananassa HOM05D008097 ORTHO05D010102 5.9e-07 58.5 48 64.6
RcHm_v2.0_Chr6g0282921 Rosa chinensis HOM05D021305 ORTHO05D342053 5.9e-07 58.5 59 49.2
FvH4_4g28900 Fragaria vesca HOM05D008097 ORTHO05D010102 7.7e-07 58.2 52 59.6
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 1.0e-06 57.8 130 35.4
FAN26G0914 Fragaria x ananassa HOM05D008097 ORTHO05D010102 1.0e-06 57.8 45 64.4
FAN04G0561 Fragaria x ananassa HOM05D008097 ORTHO05D010102 1.3e-06 57.4 53 60.4
FAN12G0796 Fragaria x ananassa HOM05D008097 ORTHO05D010102 2.9e-06 56.2 52 55.8
FAN05G1577 Fragaria x ananassa HOM05D006059 ORTHO05D010613 6.6e-06 55.1 66 47.0
FAN11G0161 Fragaria x ananassa HOM05D008097 ORTHO05D010102 6.6e-06 55.1 52 57.7
FAN14G3628 Fragaria x ananassa HOM05D008097 ORTHO05D010102 6.6e-06 55.1 52 53.8
FAN24G0852 Fragaria x ananassa HOM05D006059 ORTHO05D010613 6.6e-06 55.1 66 47.0
FvH4_5g36660 Fragaria vesca HOM05D006059 ORTHO05D010613 8.6e-06 54.7 66 47.0
FAN08G2764 Fragaria x ananassa HOM05D006059 ORTHO05D010613 8.6e-06 54.7 66 47.0
FAN13G2711 Fragaria x ananassa HOM05D006059 ORTHO05D010613 8.6e-06 54.7 66 47.0


User provided reference genes

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