Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0116341 Rosa chinensis HOM05D007384 ORTHO05D008511 1.4e-73 279.6 149 100.0
FvH4_1g22200 Fragaria vesca HOM05D007384 ORTHO05D008511 1.3e-60 236.5 152 86.2
FAN23G2853 Fragaria x ananassa HOM05D007384 ORTHO05D008511 6.6e-60 234.2 152 84.9
FAN19G0612 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.5e-59 233.0 152 84.9
FAN26G2489 Fragaria x ananassa HOM05D007384 ORTHO05D008511 4.3e-59 231.5 152 83.6
MD01G1019000 Malus domestica HOM05D007384 ORTHO05D008511 1.0e-36 157.1 151 60.3
Prupe.6G173600 Prunus persica HOM05D007384 ORTHO05D008511 3.6e-34 148.7 162 56.2
TWI77G0698 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 3.8e-31 138.7 155 48.4
Thecc.01G112100 Theobroma cacao HOM05D007384 ORTHO05D008511 4.3e-27 125.2 157 48.4
Glyma.08G141200 Glycine max HOM05D007384 ORTHO05D008511 1.4e-25 120.2 157 46.5
VMungo0251G1085 Vigna mungo HOM05D007384 ORTHO05D008511 1.8e-25 119.8 150 44.0
Dinv19495 Davidia involucrata HOM05D007384 ORTHO05D008511 6.4e-23 111.3 168 42.9
Phvul.002G264500 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 8.4e-23 110.9 152 46.1
CiPaw.03G134700 Carya illinoinensis HOM05D007384 ORTHO05D008511 1.1e-22 110.5 167 44.3
CANSAT01G1949 Cannabis sativa HOM05D007384 ORTHO05D008511 2.4e-22 109.4 165 47.9
Lj4g0022190 Lotus japonicus HOM05D007384 ORTHO05D008511 2.4e-22 109.4 160 48.1
Lj4g0025402 Lotus japonicus HOM05D007384 ORTHO05D008511 2.4e-22 109.4 160 48.1
Glyma.05G183400 Glycine max HOM05D007384 ORTHO05D008511 3.2e-22 109.0 153 41.2
Duzib187G0804 Durio zibethinus HOM05D007384 ORTHO05D008511 4.2e-22 108.6 144 50.0
Potri.005G083900 Populus trichocarpa HOM05D007384 ORTHO05D008511 2.7e-21 105.9 162 45.7
Manes.13G077680 Manihot esculenta HOM05D007384 ORTHO05D008511 6.0e-21 104.8 152 48.0
TPR.G40723 Trifolium pratense HOM05D007384 ORTHO05D008511 3.9e-20 102.1 138 47.1
Duzib187G1860 Durio zibethinus HOM05D007384 ORTHO05D008511 5.1e-20 101.7 155 45.8
Dinv42700 Davidia involucrata HOM05D007384 ORTHO05D008511 6.6e-20 101.3 166 41.0
Sabra05G0069000 Salix brachista HOM05D007384 ORTHO05D008511 1.5e-19 100.1 164 39.6
Potri.007G081700 Populus trichocarpa HOM05D007384 ORTHO05D008511 5.6e-19 98.2 146 47.9
Gohir.A10G086700 Gossypium hirsutum HOM05D007384 ORTHO05D008511 7.3e-19 97.8 161 45.3
Manes.12G142100 Manihot esculenta HOM05D007384 ORTHO05D008511 1.6e-18 96.7 168 42.9
Gorai.011G111700 Gossypium raimondii HOM05D007384 ORTHO05D008511 2.8e-18 95.9 160 46.9
Lalb_Chr11g0068051 Lupinus albus HOM05D007384 ORTHO05D008511 6.2e-18 94.7 169 43.2
Gorai.003G046900 Gossypium raimondii HOM05D007384 ORTHO05D008511 1.1e-17 94.0 157 45.2
Solyc04g053145.1 Solanum lycopersicum HOM05D007384 ORTHO05D008511 9.0e-17 90.9 152 42.8
TWI74G0307 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 1.2e-16 90.5 160 40.6
arahy.Tifrunner.gnm1.ann1.AK8RBW Arachis hypogaea HOM05D007384 ORTHO05D008511 2.0e-16 89.7 166 45.8
Lalb_Chr07g0184821 Lupinus albus HOM05D007384 ORTHO05D008511 2.0e-16 89.7 168 42.9
Lsat_1_v5_gn_2_65360 Lactuca sativa HOM05D007384 ORTHO05D008511 2.6e-16 89.4 163 36.8
Sopen04g023570 Solanum pennellii HOM05D007384 ORTHO05D008511 2.6e-16 89.4 152 41.4
Peaxi162Scf00323g00037 Petunia axillaris HOM05D007384 ORTHO05D008511 5.8e-16 88.2 154 39.6
Lalb_Chr12g0203551 Lupinus albus HOM05D007384 ORTHO05D008511 9.9e-16 87.4 159 42.8
PGSC0003DMG400012958 Solanum tuberosum HOM05D007384 ORTHO05D008511 6.4e-15 84.7 155 36.8
arahy.Tifrunner.gnm1.ann1.66AXK3 Arachis hypogaea HOM05D007384 ORTHO05D008511 1.1e-14 84.0 159 36.5
arahy.Tifrunner.gnm1.ann1.P053PK Arachis hypogaea HOM05D007384 ORTHO05D008511 1.1e-14 84.0 157 35.0
Rhsim10G0013800 Rhododendron simsii HOM05D007384 ORTHO05D008511 4.2e-14 82.0 149 41.6
arahy.Tifrunner.gnm1.ann1.3HN607 Arachis hypogaea HOM05D007384 ORTHO05D008511 2.1e-13 79.7 159 35.2
Sed0027168 Sechium edule HOM05D007384 ORTHO05D008511 2.1e-13 79.7 170 37.1
Cfa002748 Carpinus fangiana HOM05D007384 ORTHO05D008511 7.9e-13 77.8 176 36.4
CiPaw.04G092400 Carya illinoinensis HOM05D007384 ORTHO05D008511 7.9e-13 77.8 159 39.0
Atru.chr4.403 Acer truncatum HOM05D007384 ORTHO05D008511 1.8e-12 76.6 158 36.1
HanXRQChr10g0295241 Helianthus annuus HOM05D007384 ORTHO05D008511 1.8e-12 76.6 146 34.2
Lj1g0001463 Lotus japonicus HOM05D007384 ORTHO05D008511 6.7e-12 74.7 156 32.7
Hund03542 Selenicereus undatus HOM05D007384 ORTHO05D008511 6.7e-12 74.7 164 34.8
Psat5g065520 Pisum sativum HOM05D007384 ORTHO05D008511 1.9e-11 73.2 169 40.2
CARHR278890 Cardamine hirsuta HOM05D012887 ORTHO05D008511 2.5e-11 72.8 170 34.1
Medtr3g094800 Medicago truncatula HOM05D007384 ORTHO05D008511 2.5e-11 72.8 160 37.5
TAR520G0001 Trochodendron aralioides HOM05D007384 ORTHO05D008511 5.6e-11 71.6 170 30.0
CsaV3_2G017570 Cucumis sativus L. HOM05D007384 ORTHO05D008511 7.4e-11 71.2 171 35.7
arahy.Tifrunner.gnm1.ann1.XNBA0B Arachis hypogaea HOM05D007384 ORTHO05D008511 9.6e-11 70.9 72 59.7
MSTRG.23314 Avicennia marina HOM05D007384 ORTHO05D008511 9.6e-11 70.9 153 35.3
SalBow5G0260 Salvia bowleyana HOM05D007384 ORTHO05D008511 1.3e-10 70.5 150 33.3
Hund19659 Selenicereus undatus HOM05D007384 ORTHO05D008511 1.3e-10 70.5 155 33.5
SalBow5G4202 Salvia bowleyana HOM05D007384 ORTHO05D008511 3.7e-10 68.9 148 33.1
AL8G42370 Arabidopsis lyrata HOM05D012887 ORTHO05D008511 4.8e-10 68.6 156 35.3
Phvul.009G139900 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 6.2e-10 68.2 171 38.6
Oeu056487.1 Olea europaea HOM05D007384 ORTHO05D008511 1.4e-09 67.0 154 33.1
TAR628G0188 Trochodendron aralioides HOM05D007384 ORTHO05D008511 1.8e-09 66.6 170 28.8
Glyma.06G146100 Glycine max HOM05D007384 ORTHO05D008511 5.3e-09 65.1 163 30.7
AT5G64880 Arabidopsis thaliana HOM05D012887 ORTHO05D008511 6.9e-09 64.7 172 32.0
Oeu028378.1 Olea europaea HOM05D007384 ORTHO05D008511 9.0e-09 64.3 160 28.8
EL10Ac6g14748 Beta vulgaris HOM05D007384 ORTHO05D008511 1.5e-08 63.5 145 33.1
Duzib147G1655 Durio zibethinus HOM05D007384 ORTHO05D008511 1.5e-08 63.5 103 45.6
Oeu028376.1 Olea europaea HOM05D007384 ORTHO05D008511 1.5e-08 63.5 160 28.8
THA.LOC104799256 Tarenaya hassleriana HOM05D012887 ORTHO05D008511 1.5e-08 63.5 166 30.1
VMungo1309G0400 Vigna mungo HOM05D007384 ORTHO05D008511 1.5e-08 63.5 166 36.7
Oeu056489.1 Olea europaea HOM05D007384 ORTHO05D008511 2.6e-08 62.8 147 33.3
QL06p032302 Quercus lobata HOM05D007384 ORTHO05D008511 3.4e-08 62.4 88 44.3
Cc07_g16090 Coffea canephora HOM05D007384 ORTHO05D008511 1.7e-07 60.1 145 28.3
Rhsim08G0006700 Rhododendron simsii HOM05D007384 ORTHO05D008511 1.7e-07 60.1 164 34.8
Carub.0008s2571 Capsella rubella HOM05D012887 ORTHO05D008511 2.2e-07 59.7 155 32.9
Nn5g28918 Nelumbo nucifera HOM05D007384 ORTHO05D008511 3.8e-07 58.9 164 28.0
MSTRG.2538 Avicennia marina HOM05D007384 ORTHO05D008511 4.9e-07 58.5 149 34.2
DCAR_001367 Daucus carota HOM05D007384 ORTHO05D008511 4.9e-07 58.5 146 32.2
Ciclev10027326m.g Citrus clementina HOM05D007384 ORTHO05D008511 6.4e-07 58.2 48 52.1
CSS0019294 Camellia sinensis var. sinensis HOM05D007384 ORTHO05D008511 8.4e-07 57.8 101 40.6
Gohir.A02G134800 Gossypium hirsutum HOM05D007384 ORTHO05D008511 8.4e-07 57.8 125 36.8
Sabra07G0068500 Salix brachista HOM05D007384 ORTHO05D008511 8.4e-07 57.8 125 34.4
Glyma.04G219700 Glycine max HOM05D007384 ORTHO05D008511 1.4e-06 57.0 92 40.2
Hma1.2p1_0375F.1_g138660 Hydrangea macrophylla HOM05D007384 ORTHO05D008511 3.2e-06 55.8 81 39.5
Nitab4.5_0000471g0140 Nicotiana tabacum HOM05D007384 ORTHO05D008511 4.2e-06 55.5 156 34.0


User provided reference genes

Program Settings