Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-80 303.1 162 100.0
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 5.4e-76 287.7 162 95.1
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 2.8e-72 275.4 162 92.0
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.9e-57 226.1 161 82.0
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 9.6e-57 223.8 161 81.4
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 9.6e-57 223.8 161 81.4
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.1e-55 220.3 161 80.7
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.9e-55 217.6 161 80.1
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.5e-54 216.5 161 79.5
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 5.5e-52 208.0 132 85.6
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.2e-52 207.6 161 78.3
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 9.0e-47 190.7 151 75.5
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.3e-45 186.8 162 66.7
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 8.5e-45 184.1 146 74.0
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 1.9e-44 183.0 129 79.8
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.9e-44 183.0 129 78.3
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 4.2e-44 181.8 164 65.2
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 1.8e-42 176.4 164 64.0
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 8.8e-42 174.1 167 62.3
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 2.9e-37 159.1 166 56.6
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 2.9e-37 159.1 163 58.9
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 5.0e-37 158.3 170 56.5
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 1.9e-36 156.4 166 59.0
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 7.2e-36 154.5 168 56.0
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 9.4e-36 154.1 168 58.3
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 1.2e-35 153.7 164 56.7
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.2e-35 153.7 166 59.0
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.7e-35 152.5 164 56.1
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 2.7e-35 152.5 168 56.5
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 4.7e-35 151.8 167 56.9
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.4e-34 150.2 163 58.3
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 3.9e-34 148.7 168 55.4
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.5e-33 146.7 172 53.5
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 2.0e-33 146.4 167 55.7
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.0e-33 146.4 163 57.7
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 9.7e-33 144.1 166 56.6
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.7e-32 143.3 164 56.1
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 2.8e-32 142.5 178 51.7
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 4.8e-32 141.7 165 55.2
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 4.1e-31 138.7 118 73.7
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 1.0e-29 134.0 120 60.8
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.0e-29 134.0 160 53.1
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 1.3e-29 133.7 163 54.0
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 2.9e-29 132.5 163 53.4
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.0e-29 131.7 175 49.7
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 5.0e-29 131.7 161 52.8
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 6.5e-29 131.3 169 52.1
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 8.5e-29 131.0 166 50.0
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.9e-28 129.8 171 52.0
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.9e-28 129.8 163 51.5
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 3.2e-28 129.0 165 52.1
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 5.5e-28 128.3 167 52.7
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 2.1e-27 126.3 121 59.5
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 3.6e-27 125.6 160 54.4
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 3.6e-27 125.6 171 50.9
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 4.7e-27 125.2 117 59.0
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 6.1e-27 124.8 170 48.8
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 8.0e-27 124.4 167 49.1
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 8.0e-27 124.4 165 51.5
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.0e-26 124.0 167 51.5
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 5.2e-26 121.7 171 49.7
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 6.7e-26 121.3 170 50.0
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 1.1e-25 120.6 165 49.7
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.5e-25 120.2 169 51.5
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 2.6e-25 119.4 165 49.1
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 2.6e-25 119.4 161 47.8
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 3.3e-25 119.0 176 45.5
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 4.4e-25 118.6 118 57.6
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 5.7e-25 118.2 121 53.7
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 7.5e-25 117.9 118 56.8
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 7.5e-25 117.9 118 56.8
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 7.5e-25 117.9 118 56.8
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 9.7e-25 117.5 120 54.2
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 9.7e-25 117.5 164 48.8
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 1.3e-24 117.1 163 49.7
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.7e-24 116.7 165 48.5
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 2.2e-24 116.3 164 47.6
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 2.2e-24 116.3 164 47.6
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 2.2e-24 116.3 164 47.6
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 2.2e-24 116.3 166 50.6
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.8e-24 115.9 166 45.8
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 2.8e-24 115.9 115 54.8
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 3.7e-24 115.5 109 56.9
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 4.8e-24 115.2 164 47.6
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 4.8e-24 115.2 164 47.6
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 6.3e-24 114.8 170 48.8
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.1e-23 114.0 111 56.8
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.1e-23 114.0 169 47.3
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.4e-23 113.6 164 47.6
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.8e-23 113.2 115 58.3
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 3.1e-23 112.5 167 48.5
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 4.1e-23 112.1 163 47.9
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 5.3e-23 111.7 116 56.9
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 5.3e-23 111.7 115 58.3
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 7.0e-23 111.3 166 48.8
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.2e-22 110.5 167 46.7
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.2e-22 110.5 170 50.6
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.6e-22 110.2 115 56.5
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 2.7e-22 109.4 164 46.3
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 2.7e-22 109.4 160 45.6
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 3.5e-22 109.0 161 45.3
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 7.7e-22 107.8 166 47.0
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 1.0e-21 107.5 171 45.6
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.3e-21 107.1 166 46.4
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.9e-21 105.9 166 43.4
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 6.5e-21 104.8 163 46.0
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 6.5e-21 104.8 163 46.6
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 6.5e-21 104.8 123 54.5
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 8.5e-21 104.4 166 42.8
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.9e-20 103.2 115 47.8
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 4.2e-20 102.1 167 44.9
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 9.4e-20 100.9 125 51.2
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.2e-19 100.5 116 55.2
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 2.1e-19 99.8 167 44.9
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 3.6e-19 99.0 179 44.1
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.8e-18 96.7 116 54.3
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 1.8e-18 96.7 150 46.7
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.6e-17 92.8 163 42.3
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.3e-16 90.5 93 57.0
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 2.4e-15 86.3 158 39.2
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 4.5e-14 82.0 162 38.9
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.2e-13 79.7 168 39.3
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.9e-13 79.3 106 43.4
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 1.1e-12 77.4 74 56.8
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 1.9e-12 76.6 125 40.8
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 5.5e-12 75.1 162 38.3
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 2.7e-11 72.8 118 39.0
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 4.7e-11 72.0 83 48.2
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 8.0e-11 71.2 126 43.7
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 3.0e-10 69.3 135 41.5
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.5e-09 67.0 65 55.4
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 2.0e-06 56.6 182 34.6


User provided reference genes

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