Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 1.3e-172 610.1 450 100.0
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.3e-148 530.4 450 80.9
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.3e-147 525.8 450 79.1
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.3e-145 518.5 450 78.7
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.9e-144 514.2 450 82.9
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 5.1e-124 448.7 458 69.9
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 1.9e-118 430.3 243 90.5
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.1e-110 404.4 270 77.4
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 6.7e-108 395.2 244 80.3
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 6.7e-108 395.2 242 82.2
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.5e-107 394.0 244 81.1
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.6e-107 393.3 270 75.6
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 3.3e-107 392.9 247 79.4
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 4.4e-107 392.5 500 61.8
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 7.4e-107 391.7 267 75.7
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.7e-106 390.6 245 82.0
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.2e-106 390.2 270 75.9
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 2.4e-105 386.7 245 80.8
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.4e-105 386.7 244 81.1
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 7.0e-105 385.2 273 73.6
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.5e-104 384.0 244 80.7
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.5e-104 384.0 244 80.7
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 2.0e-104 383.6 245 77.6
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 2.0e-104 383.6 469 60.6
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.5e-104 382.9 242 78.9
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 4.5e-104 382.5 245 77.1
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 4.5e-104 382.5 244 79.5
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 5.9e-104 382.1 244 79.1
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 7.7e-104 381.7 270 71.9
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 7.7e-104 381.7 270 71.9
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 7.7e-104 381.7 245 76.7
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 7.7e-104 381.7 245 77.1
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.0e-103 381.3 265 75.5
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 1.7e-103 380.6 245 76.7
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 2.2e-103 380.2 245 76.7
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 2.9e-103 379.8 270 73.0
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 6.5e-103 378.6 245 76.7
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 8.5e-103 378.3 269 74.7
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 8.5e-103 378.3 244 78.7
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.4e-102 377.5 270 70.7
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.4e-102 377.5 270 70.7
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 1.4e-102 377.5 245 75.9
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.2e-102 376.3 245 77.6
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 3.2e-102 376.3 243 77.4
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.2e-102 376.3 260 73.5
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 7.2e-102 375.2 244 77.0
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 7.2e-102 375.2 243 77.8
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 7.2e-102 375.2 270 71.5
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.6e-101 374.0 244 77.5
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 4.7e-101 372.5 456 53.7
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.4e-100 370.9 240 79.6
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.3e-100 370.2 245 76.3
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 3.0e-100 369.8 244 78.3
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 3.0e-100 369.8 244 76.2
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.5e-99 367.5 240 77.1
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 2.6e-99 366.7 271 69.4
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 3.3e-99 366.3 246 74.0
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 3.3e-99 366.3 246 74.0
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 3.3e-99 366.3 270 69.3
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.3e-98 364.4 244 77.9
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 2.8e-98 363.2 245 75.5
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.8e-98 363.2 244 76.6
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 2.8e-98 363.2 271 70.8
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 3.7e-98 362.8 245 75.1
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.7e-98 362.8 244 75.0
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.1e-97 361.3 453 60.0
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.1e-97 361.3 242 74.8
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.4e-97 360.9 464 59.1
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 1.8e-97 360.5 272 71.0
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 3.1e-97 359.8 241 75.9
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.1e-97 359.8 245 75.5
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 5.3e-97 359.0 464 56.9
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 9.1e-97 358.2 464 59.9
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.0e-96 357.1 244 77.0
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 7.7e-96 355.1 241 73.4
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 7.7e-96 355.1 241 73.4
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.3e-95 354.4 273 68.5
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.7e-95 354.0 238 75.2
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 2.2e-95 353.6 243 71.6
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 8.5e-95 351.7 243 72.8
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.9e-94 350.5 245 72.2
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 2.1e-93 347.1 247 72.9
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 4.7e-93 345.9 245 72.2
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 6.1e-93 345.5 245 71.0
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 6.1e-93 345.5 240 75.8
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 1.0e-92 344.7 243 71.2
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.0e-92 344.7 244 71.7
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.4e-92 344.4 243 73.3
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 2.3e-92 343.6 244 72.5
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.2e-91 341.3 246 72.8
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.5e-91 340.9 250 68.4
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 5.7e-91 339.0 235 72.3
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 2.8e-90 336.7 250 67.6
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.1e-89 334.7 244 70.1
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.4e-89 334.3 244 71.3
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.4e-89 333.6 270 65.9
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 7.0e-89 332.0 244 69.7
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 7.0e-89 332.0 244 71.3
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.2e-88 331.3 244 70.9
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.0e-88 330.5 242 69.0
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 5.9e-88 328.9 249 67.5
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.0e-87 328.2 239 69.9
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.0e-87 328.2 261 67.0
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 2.2e-87 327.0 244 67.2
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.9e-87 326.6 266 66.2
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 2.9e-87 326.6 231 70.1
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 2.5e-86 323.6 244 68.0
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 2.7e-85 320.1 244 67.2
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.8e-84 317.4 233 69.1
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.2e-83 314.7 237 67.9
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 9.1e-81 305.1 237 64.1
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 2.0e-80 303.9 221 68.8
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 9.5e-78 295.0 213 70.9
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.6e-77 294.3 244 62.7
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 6.1e-77 292.4 227 65.2
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 4.9e-74 282.7 223 61.9
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 4.1e-73 279.6 230 63.9
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 5.4e-65 252.7 242 53.7
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.7e-55 221.1 243 47.7
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.3e-47 194.9 252 41.3
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 1.5e-46 191.4 249 43.8
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 9.6e-46 188.7 248 44.4
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 4.7e-45 186.4 112 80.4
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 4.9e-42 176.4 229 40.2
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.4e-41 174.9 246 41.1
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 3.9e-39 166.8 237 42.6
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 6.6e-39 166.0 89 85.4
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.4e-36 158.3 244 37.7
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 1.3e-34 151.8 234 38.5
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 6.0e-32 142.9 128 57.0
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.1e-30 138.7 222 36.0
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.9e-30 137.9 295 53.2
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.1e-29 134.4 227 37.9
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.4e-28 131.7 218 32.1
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 4.2e-25 120.2 160 43.8
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.2e-24 118.6 225 32.0
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 3.0e-23 114.0 214 30.8
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.5e-22 111.7 220 34.1
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.9e-17 94.7 66 63.6
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 7.4e-14 82.8 131 38.9
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 9.6e-14 82.4 105 47.6
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 8.2e-13 79.3 126 39.7
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 8.2e-13 79.3 105 42.9
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 1.8e-12 78.2 211 29.9
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 2.4e-12 77.8 108 43.5
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 4.5e-11 73.6 177 32.2
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 3.8e-10 70.5 48 56.2
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 3.2e-09 67.4 51 49.0
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 4.2e-09 67.0 49 63.3
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 7.1e-09 66.2 57 50.9
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 2.5e-06 57.8 134 29.9
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 4.3e-06 57.0 126 27.8


User provided reference genes

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