Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0114171 Rosa chinensis HOM05D000021 ORTHO05D000010 3.2e-42 176.4 293 100.0
RcHm_v2.0_Chr2g0114121 Rosa chinensis HOM05D000021 ORTHO05D000010 1.2e-28 131.3 79 79.7
RcHm_v2.0_Chr2g0113631 Rosa chinensis HOM05D000021 ORTHO05D000010 1.5e-28 131.0 79 79.7
RcHm_v2.0_Chr2g0113951 Rosa chinensis HOM05D000021 ORTHO05D000010 1.5e-28 131.0 81 80.2
RcHm_v2.0_Chr6g0277761 Rosa chinensis HOM05D000021 ORTHO05D000010 1.0e-27 128.3 79 79.7
RcHm_v2.0_Chr2g0114281 Rosa chinensis HOM05D000021 ORTHO05D000010 1.7e-27 127.5 81 77.8
RcHm_v2.0_Chr2g0113611 Rosa chinensis HOM05D000021 ORTHO05D000010 3.8e-27 126.3 81 77.8
RcHm_v2.0_Chr2g0115761 Rosa chinensis HOM05D000021 ORTHO05D000010 6.5e-27 125.6 79 78.5
RcHm_v2.0_Chr4g0387401 Rosa chinensis HOM05D000021 ORTHO05D000010 8.4e-27 125.2 79 78.5
RcHm_v2.0_Chr2g0113761 Rosa chinensis HOM05D000021 ORTHO05D000010 1.4e-26 124.4 79 79.7
RcHm_v2.0_Chr2g0114021 Rosa chinensis HOM05D000021 ORTHO05D000010 4.2e-26 122.9 81 75.3
RcHm_v2.0_Chr2g0114381 Rosa chinensis HOM05D000021 ORTHO05D000010 1.6e-25 120.9 79 77.2
RcHm_v2.0_Chr2g0114221 Rosa chinensis HOM05D000021 ORTHO05D000010 5.1e-24 115.9 79 73.4
RcHm_v2.0_Chr5g0011341 Rosa chinensis HOM05D000021 ORTHO05D000010 3.7e-22 109.8 79 68.4
RcHm_v2.0_Chr5g0011691 Rosa chinensis HOM05D000021 ORTHO05D000010 3.7e-22 109.8 79 69.6
RcHm_v2.0_Chr6g0277701 Rosa chinensis HOM05D000021 ORTHO05D000010 1.1e-21 108.2 79 69.6
RcHm_v2.0_Chr6g0251871 Rosa chinensis HOM05D000021 ORTHO05D000010 1.4e-21 107.8 78 70.5
RcHm_v2.0_Chr5g0040131 Rosa chinensis HOM05D000021 ORTHO05D000010 8.5e-19 98.6 74 67.6
RcHm_v2.0_Chr2g0113871 Rosa chinensis HOM05D000021 ORTHO05D000010 2.5e-18 97.1 56 85.7
FAN16G1847 Fragaria x ananassa HOM05D000021 ORTHO05D000010 4.2e-18 96.3 79 60.8
FvH4_3g07490 Fragaria vesca HOM05D000021 ORTHO05D000010 5.5e-18 95.9 79 60.8
FAN25G2514 Fragaria x ananassa HOM05D000021 ORTHO05D000010 5.5e-18 95.9 79 60.8
RcHm_v2.0_Chr5g0059131 Rosa chinensis HOM05D000021 ORTHO05D000010 5.5e-18 95.9 77 59.7
FvH4_3g07510 Fragaria vesca HOM05D000021 ORTHO05D000010 9.4e-18 95.1 77 66.2
FAN11G3219 Fragaria x ananassa HOM05D000021 ORTHO05D000010 9.4e-18 95.1 77 66.2
FAN16G0737 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.5e-15 87.8 85 55.3
FAN25G3786 Fragaria x ananassa HOM05D000021 ORTHO05D000010 5.7e-15 85.9 85 54.1
RcHm_v2.0_Chr5g0011171 Rosa chinensis HOM05D000021 ORTHO05D000010 5.7e-15 85.9 79 57.0
FAN11G0142 Fragaria x ananassa HOM05D000021 ORTHO05D000010 9.7e-15 85.1 85 54.1
RcHm_v2.0_Chr1g0336221 Rosa chinensis HOM05D000021 ORTHO05D000010 2.2e-14 84.0 87 52.9
RcHm_v2.0_Chr5g0011291 Rosa chinensis HOM05D000021 ORTHO05D000010 2.2e-14 84.0 82 51.2
RcHm_v2.0_Chr5g0011141 Rosa chinensis HOM05D000021 ORTHO05D000010 4.1e-13 79.7 86 52.3
Prupe.4G064200 Prunus persica HOM05D000021 ORTHO05D000010 5.3e-13 79.3 82 53.7
Prupe.4G064500 Prunus persica HOM05D000021 ORTHO05D000010 9.1e-13 78.6 82 52.4
Prupe.2G048900 Prunus persica HOM05D000021 ORTHO05D000010 1.5e-12 77.8 88 48.9
RcHm_v2.0_Chr5g0011271 Rosa chinensis HOM05D000021 ORTHO05D000010 1.5e-12 77.8 81 48.1
RcHm_v2.0_Chr5g0040461 Rosa chinensis HOM05D000021 ORTHO05D000010 1.5e-12 77.8 81 54.3
RcHm_v2.0_Chr5g0059161 Rosa chinensis HOM05D000021 ORTHO05D000010 2.0e-12 77.4 82 51.2
RcHm_v2.0_Chr5g0059181 Rosa chinensis HOM05D000021 ORTHO05D000010 2.0e-12 77.4 85 48.2
MD05G1298400 Malus domestica HOM05D000021 ORTHO05D000010 2.6e-12 77.0 86 47.7
MD10G1277600 Malus domestica HOM05D000021 ORTHO05D000010 4.5e-12 76.3 87 47.1
Prupe.4G063400 Prunus persica HOM05D000021 ORTHO05D000010 5.9e-12 75.9 82 50.0
RcHm_v2.0_Chr5g0010941 Rosa chinensis HOM05D000021 ORTHO05D000010 5.9e-12 75.9 79 54.4
Prupe.4G064600 Prunus persica HOM05D000021 ORTHO05D000010 1.0e-11 75.1 82 50.0
MD05G1297900 Malus domestica HOM05D000021 ORTHO05D000010 1.3e-11 74.7 86 46.5
RcHm_v2.0_Chr5g0011261 Rosa chinensis HOM05D000021 ORTHO05D000010 1.3e-11 74.7 85 47.1
RcHm_v2.0_Chr7g0213301 Rosa chinensis HOM05D000021 ORTHO05D000010 1.3e-11 74.7 86 51.2
FAN21G4067 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.7e-11 74.3 79 49.4
FvH4_3g37722 Fragaria vesca HOM05D000021 ORTHO05D000010 2.2e-11 73.9 79 51.9
Prupe.4G064400 Prunus persica HOM05D000021 ORTHO05D000010 2.2e-11 73.9 88 47.7
RcHm_v2.0_Chr5g0016021 Rosa chinensis HOM05D000021 ORTHO05D000010 2.2e-11 73.9 72 55.6
MD05G1297700 Malus domestica HOM05D000021 ORTHO05D000010 2.9e-11 73.6 90 44.4
MD07G1034900 Malus domestica HOM05D000021 ORTHO05D000010 3.8e-11 73.2 86 45.3
FAN11G2251 Fragaria x ananassa HOM05D000021 ORTHO05D000010 5.0e-11 72.8 79 48.1
MD07G1035000 Malus domestica HOM05D000021 ORTHO05D000010 5.0e-11 72.8 86 44.2
RcHm_v2.0_Chr2g0113661 Rosa chinensis HOM05D000021 ORTHO05D000010 5.0e-11 72.8 79 53.2
Prupe.4G063300 Prunus persica HOM05D000021 ORTHO05D000010 6.5e-11 72.4 82 47.6
RcHm_v2.0_Chr5g0040431 Rosa chinensis HOM05D000021 ORTHO05D000010 6.5e-11 72.4 87 48.3
RcHm_v2.0_Chr5g0040481 Rosa chinensis HOM05D000021 ORTHO05D000010 6.5e-11 72.4 87 48.3
FvH4_1g13810 Fragaria vesca HOM05D000021 ORTHO05D000010 8.5e-11 72.0 79 50.6
FAN25G0019 Fragaria x ananassa HOM05D000021 ORTHO05D000010 8.5e-11 72.0 87 47.1
MD07G1034700 Malus domestica HOM05D000021 ORTHO05D000010 1.1e-10 71.6 86 43.0
Prupe.4G057800 Prunus persica HOM05D000021 ORTHO05D000010 1.4e-10 71.2 82 47.6
Prupe.4G130200 Prunus persica HOM05D000021 ORTHO05D000010 1.4e-10 71.2 82 50.0
Prupe.2G044400 Prunus persica HOM05D000021 ORTHO05D000010 1.9e-10 70.9 82 48.8
MD07G1035900 Malus domestica HOM05D000021 ORTHO05D000010 4.2e-10 69.7 86 44.2
Prupe.6G160800 Prunus persica HOM05D000021 ORTHO05D000010 4.2e-10 69.7 82 46.3
FAN25G0369 Fragaria x ananassa HOM05D000021 ORTHO05D000010 7.2e-10 68.9 77 48.1
MD11G1180300 Malus domestica HOM05D000021 ORTHO05D000010 2.7e-09 67.0 78 47.4
Prupe.6G160900 Prunus persica HOM05D000021 ORTHO05D000010 2.7e-09 67.0 82 46.3
MD03G1180600 Malus domestica HOM05D000021 ORTHO05D000010 3.6e-09 66.6 73 52.1
TWI09G0247 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 3.6e-09 66.6 84 45.2
MD00G1192900 Malus domestica HOM05D000021 ORTHO05D000010 4.7e-09 66.2 83 43.4
MD02G1291600 Malus domestica HOM05D000021 ORTHO05D000010 4.7e-09 66.2 86 43.0
Prupe.6G294300 Prunus persica HOM05D000021 ORTHO05D000010 4.7e-09 66.2 76 50.0
MD13G1193600 Malus domestica HOM05D000021 ORTHO05D000010 1.0e-08 65.1 86 44.2
MD03G1138500 Malus domestica HOM05D000021 ORTHO05D000010 1.4e-08 64.7 73 47.9
MD07G1236800 Malus domestica HOM05D000021 ORTHO05D000010 1.4e-08 64.7 73 49.3
FAN16G0633 Fragaria x ananassa HOM05D000021 ORTHO05D000010 2.3e-08 63.9 71 50.7
MD03G1180000 Malus domestica HOM05D000021 ORTHO05D000010 2.3e-08 63.9 73 47.9
TWI09G1583 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 2.3e-08 63.9 84 44.0
Duzib160G0341 Durio zibethinus HOM05D000021 ORTHO05D000010 5.1e-08 62.8 70 45.7
MD07G1235900 Malus domestica HOM05D000021 ORTHO05D000010 5.1e-08 62.8 83 42.2
MD03G1182000 Malus domestica HOM05D000021 ORTHO05D000010 8.8e-08 62.0 73 47.9
Actinidia29435 Actinidia chinensis HOM05D000021 ORTHO05D000010 1.5e-07 61.2 68 45.6
Ciclev10024125m.g Citrus clementina HOM05D000021 ORTHO05D000010 2.6e-07 60.5 75 41.3
Duzib213G1008 Durio zibethinus HOM05D000021 ORTHO05D000010 2.6e-07 60.5 67 46.3
MD07G1235700 Malus domestica HOM05D000021 ORTHO05D000010 2.6e-07 60.5 73 47.9
MD07G1236200 Malus domestica HOM05D000021 ORTHO05D000010 2.6e-07 60.5 73 46.6
CSS0025578 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.3e-07 60.1 63 49.2
Haze_05412 Corylus avellana HOM05D000021 ORTHO05D017886 3.3e-07 60.1 76 48.7
Oeu004406.2 Olea europaea HOM05D000021 ORTHO05D000010 3.3e-07 60.1 77 40.3
vmacro03921 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 3.3e-07 60.1 73 38.4
Cc00_g17350 Coffea canephora HOM05D000021 ORTHO05D000010 5.7e-07 59.3 81 39.5
Haze_05815 Corylus avellana HOM05D000021 ORTHO05D000010 5.7e-07 59.3 82 43.9
Haze_09392 Corylus avellana HOM05D000021 ORTHO05D000010 5.7e-07 59.3 84 46.4
Actinidia29429 Actinidia chinensis HOM05D000021 ORTHO05D000010 7.4e-07 58.9 68 45.6
Cpa.g.sc596.1 Carica papaya HOM05D000021 ORTHO05D000010 7.4e-07 58.9 76 40.8
TWI09G1256 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 7.4e-07 58.9 79 44.3
Ciclev10003919m.g Citrus clementina HOM05D000021 ORTHO05D000010 9.7e-07 58.5 85 41.2
Haze_05413 Corylus avellana HOM05D000021 ORTHO05D000010 9.7e-07 58.5 80 45.0
RcHm_v2.0_Chr5g0016011 Rosa chinensis HOM05D000021 ORTHO05D000010 9.7e-07 58.5 81 48.1
SalBow7G2857 Salvia bowleyana HOM05D000021 ORTHO05D000010 9.7e-07 58.5 75 41.3
SalBow7G3469 Salvia bowleyana HOM05D000021 ORTHO05D000010 9.7e-07 58.5 75 41.3
Cc00_g07730 Coffea canephora HOM05D000021 ORTHO05D000010 1.3e-06 58.2 70 42.9
MD03G1180800 Malus domestica HOM05D000021 ORTHO05D000010 1.3e-06 58.2 73 47.9
Rhsim13G0188900 Rhododendron simsii HOM05D000021 ORTHO05D000010 1.3e-06 58.2 71 39.4
SalBow7G1732 Salvia bowleyana HOM05D000021 ORTHO05D000010 1.3e-06 58.2 57 47.4
Ciclev10018067m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.7e-06 57.8 85 41.2
Nn8g40226 Nelumbo nucifera HOM05D000021 ORTHO05D000010 1.7e-06 57.8 72 43.1
Oeu035397.3 Olea europaea HOM05D000021 ORTHO05D000010 1.7e-06 57.8 77 37.7
RcHm_v2.0_Chr4g0402601 Rosa chinensis HOM05D000021 ORTHO05D000010 1.7e-06 57.8 86 43.0
RcHm_v2.0_Chr5g0042191 Rosa chinensis HOM05D000002 ORTHO05D000001 1.7e-06 57.8 79 43.0
TWI09G0717 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.7e-06 57.8 79 41.8
CiPaw.06G015700 Carya illinoinensis HOM05D000021 ORTHO05D000010 2.2e-06 57.4 77 37.7
CiPaw.10G101200 Carya illinoinensis HOM05D000021 ORTHO05D000010 2.8e-06 57.0 85 38.8
Ciclev10010243m.g Citrus clementina HOM05D000021 ORTHO05D000010 2.8e-06 57.0 72 40.3
Migut.N03333 Erythranthe guttata HOM05D000021 ORTHO05D000010 2.8e-06 57.0 55 50.9
Oeu051418.2 Olea europaea HOM05D000021 ORTHO05D000010 2.8e-06 57.0 64 42.2
CAN.G149.47 Capsicum annuum HOM05D000021 ORTHO05D000010 3.7e-06 56.6 83 39.8
CiPaw.10G099300 Carya illinoinensis HOM05D000021 ORTHO05D000010 3.7e-06 56.6 85 40.0
Haze_09399 Corylus avellana HOM05D000021 ORTHO05D000010 3.7e-06 56.6 59 54.2
Gohir.A10G037501 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.7e-06 56.6 72 44.4
MD07G1236500 Malus domestica HOM05D000021 ORTHO05D000010 3.7e-06 56.6 73 45.2
Nn8g40224 Nelumbo nucifera HOM05D000021 ORTHO05D000010 3.7e-06 56.6 80 41.2
QL11p015128 Quercus lobata HOM05D000021 ORTHO05D000010 3.7e-06 56.6 79 38.0
RcHm_v2.0_Chr4g0404191 Rosa chinensis HOM05D000021 ORTHO05D000010 3.7e-06 56.6 73 39.7
Ciclev10014011m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.8e-06 56.2 73 39.7
Haze_05814 Corylus avellana HOM05D000021 ORTHO05D017886 4.8e-06 56.2 81 39.5
Lj4C557G2 Lonicera japonica HOM05D000021 ORTHO05D000010 4.8e-06 56.2 76 40.8
MD02G1291800 Malus domestica HOM05D000021 ORTHO05D000010 4.8e-06 56.2 54 53.7
Manes.17G057700 Manihot esculenta HOM05D000021 ORTHO05D000010 4.8e-06 56.2 75 41.3
Oeu051129.2 Olea europaea HOM05D000021 ORTHO05D000010 4.8e-06 56.2 73 41.1
Duzib213G0562 Durio zibethinus HOM05D000021 ORTHO05D000010 6.3e-06 55.8 72 41.7
Psat4g130240 Pisum sativum HOM05D000021 ORTHO05D000010 6.3e-06 55.8 71 45.1
CiPaw.10G100500 Carya illinoinensis HOM05D000021 ORTHO05D000010 8.2e-06 55.5 85 38.8
Nn8g40225 Nelumbo nucifera HOM05D000021 ORTHO05D000010 8.2e-06 55.5 82 42.7
Oeu024437.1 Olea europaea HOM05D000021 ORTHO05D000010 8.2e-06 55.5 74 40.5
Oeu039180.1 Olea europaea HOM05D000021 ORTHO05D000010 8.2e-06 55.5 80 38.8


User provided reference genes

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