Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0113891 Rosa chinensis HOM05D002111 ORTHO05D002160 2.9e-177 625.2 324 100.0
RcHm_v2.0_Chr2g0114391 Rosa chinensis HOM05D002111 ORTHO05D002160 4.1e-99 365.5 290 71.7
FAN23G1977 Fragaria x ananassa HOM05D002111 ORTHO05D002160 3.1e-86 322.8 290 63.8
FvH4_1g20920 Fragaria vesca HOM05D002111 ORTHO05D002160 7.8e-82 308.1 290 60.7
FAN28G1556 Fragaria x ananassa HOM05D002111 ORTHO05D002160 5.0e-81 305.4 290 61.4
FAN19G2413 Fragaria x ananassa HOM05D002111 ORTHO05D002160 2.8e-79 299.7 290 60.0
FAN26G0864 Fragaria x ananassa HOM05D002111 ORTHO05D002160 6.2e-79 298.5 290 60.0
Prupe.6G186700 Prunus persica HOM05D002111 ORTHO05D002160 5.4e-75 285.4 290 57.6
RcHm_v2.0_Chr2g0114361 Rosa chinensis HOM05D002111 ORTHO05D002160 5.4e-75 285.4 189 84.7
MD15G1324300 Malus domestica HOM05D002111 ORTHO05D002160 1.2e-74 284.3 290 57.9
RcHm_v2.0_Chr2g0113971 Rosa chinensis HOM05D002111 ORTHO05D002160 7.6e-61 238.4 138 89.9
Ciclev10025897m.g Citrus clementina HOM05D002111 ORTHO05D002160 1.9e-59 233.8 290 49.7
CiPaw.04G099300 Carya illinoinensis HOM05D002111 ORTHO05D002160 7.3e-56 221.9 290 47.9
QL06p049551 Quercus lobata HOM05D002111 ORTHO05D002160 3.6e-55 219.5 293 46.8
CANSAT01G1806 Cannabis sativa HOM05D002111 ORTHO05D002160 3.1e-54 216.5 288 46.9
Duzib147G0507 Durio zibethinus HOM05D002111 ORTHO05D002160 5.3e-54 215.7 294 47.6
Duzib264G1191 Durio zibethinus HOM05D002111 ORTHO05D002160 6.9e-54 215.3 322 43.8
Eucgr.H04786 Eucalyptus grandis HOM05D002111 ORTHO05D002160 5.8e-53 212.2 295 46.4
Atru.chr4.66 Acer truncatum HOM05D002111 ORTHO05D002160 1.3e-52 211.1 290 45.5
Manes.12G135100 Manihot esculenta HOM05D002111 ORTHO05D002160 2.9e-52 209.9 290 44.8
Potri.007G092700 Populus trichocarpa HOM05D002111 ORTHO05D002160 1.4e-51 207.6 283 49.5
Haze_24935 Corylus avellana HOM05D002111 ORTHO05D002160 9.3e-51 204.9 290 44.8
TWI53G1715 Tripterygium wilfordii HOM05D002111 ORTHO05D002160 1.6e-50 204.1 292 45.9
ClCG10G008810 Citrullus lanatus HOM05D002111 ORTHO05D002160 2.1e-50 203.8 286 46.2
PGR102G2983 Punica granatum HOM05D002111 ORTHO05D002160 4.6e-50 202.6 293 44.0
Sabra07G0076900 Salix brachista HOM05D002111 ORTHO05D002160 4.6e-50 202.6 284 47.9
Sed0022569 Sechium edule HOM05D002111 ORTHO05D002160 1.0e-49 201.4 290 44.5
Cfa002666 Carpinus fangiana HOM05D002111 ORTHO05D002160 2.3e-49 200.3 290 44.8
MELO3C018977.2 Cucumis melo HOM05D002111 ORTHO05D002160 1.1e-48 198.0 286 46.2
CsaV3_4G008920 Cucumis sativus L. HOM05D002111 ORTHO05D002160 1.9e-48 197.2 286 45.5
Gohir.D12G085900 Gossypium hirsutum HOM05D002111 ORTHO05D002160 1.9e-48 197.2 291 46.4
Gorai.008G096200 Gossypium raimondii HOM05D002111 ORTHO05D002160 2.5e-48 196.8 291 46.4
Thecc.01G101700 Theobroma cacao HOM05D002111 ORTHO05D002160 4.3e-48 196.1 196 56.1
Gohir.A02G143300 Gossypium hirsutum HOM05D002111 ORTHO05D002160 4.8e-47 192.6 293 44.7
CiPaw.03G141700 Carya illinoinensis HOM05D002111 ORTHO05D002160 6.2e-47 192.2 291 44.7
COL.COLO4_09962 Corchorus olitorius HOM05D002111 ORTHO05D002160 2.4e-46 190.3 294 43.9
Gohir.D03G037200 Gossypium hirsutum HOM05D002111 ORTHO05D002160 2.4e-46 190.3 301 43.5
Gorai.003G039000 Gossypium raimondii HOM05D002111 ORTHO05D002160 3.1e-46 189.9 296 43.9
Potri.005G075800 Populus trichocarpa HOM05D002111 ORTHO05D002160 4.0e-46 189.5 291 45.0
TAR625G1521 Trochodendron aralioides HOM05D002111 ORTHO05D002160 1.5e-45 187.6 292 41.4
TAR381G0049 Trochodendron aralioides HOM05D002111 ORTHO05D002160 3.4e-45 186.4 293 42.3
MSTRG.23342 Avicennia marina HOM05D002111 ORTHO05D002160 8.4e-44 181.8 291 41.9
Hma1.2p1_0047F.1_g027840 Hydrangea macrophylla HOM05D002111 ORTHO05D002160 8.4e-44 181.8 297 44.1
CSS0037925 Camellia sinensis var. sinensis HOM05D002111 ORTHO05D002160 3.2e-43 179.9 295 43.7
Rhsim10G0163000 Rhododendron simsii HOM05D002111 ORTHO05D002160 5.4e-43 179.1 300 43.0
THA.LOC104824875 Tarenaya hassleriana HOM05D002111 ORTHO05D002160 1.2e-42 177.9 293 41.6
SGA_v2.0_scaffold111G31519 Striga asiatica HOM05D002111 ORTHO05D002160 3.5e-42 176.4 283 39.6
Sc03g0002090 Simmondsia chinensis HOM05D002111 ORTHO05D002160 1.0e-41 174.9 302 40.7
THA.LOC104807695 Tarenaya hassleriana HOM05D002111 ORTHO05D002160 1.8e-41 174.1 295 41.7
Actinidia20017 Actinidia chinensis HOM05D002111 ORTHO05D002160 6.7e-41 172.2 293 42.0
Phvul.002G255900 Phaseolus vulgaris HOM05D002111 ORTHO05D002160 8.7e-41 171.8 296 40.5
Glyma.11G240100 Glycine max HOM05D002111 ORTHO05D002160 4.3e-40 169.5 295 43.7
Glyma.18G017300 Glycine max HOM05D002111 ORTHO05D002160 4.3e-40 169.5 294 42.2
Phvul.001G252100 Phaseolus vulgaris HOM05D002111 ORTHO05D002160 5.6e-40 169.1 292 41.8
CAN.G842.1 Capsicum annuum HOM05D002111 ORTHO05D002160 2.1e-39 167.2 282 39.0
PGSC0003DMG400001887 Solanum tuberosum HOM05D002111 ORTHO05D002160 2.1e-39 167.2 287 38.7
Peaxi162Scf00212g00717 Petunia axillaris HOM05D002111 ORTHO05D002160 2.8e-39 166.8 317 37.5
Solyc04g055180.3 Solanum lycopersicum HOM05D002111 ORTHO05D002160 6.2e-39 165.6 287 38.7
Cpa.g.c38732 Carica papaya HOM05D002111 ORTHO05D002160 1.8e-38 164.1 150 58.0
Sopen04g025040 Solanum pennellii HOM05D002111 ORTHO05D002160 1.8e-38 164.1 287 38.3
PSO210G4458 Papaver somniferum HOM05D002111 ORTHO05D002160 9.0e-38 161.8 284 40.1
PSO447G0066 Papaver somniferum HOM05D002111 ORTHO05D002160 9.0e-38 161.8 284 39.4
Sp7g36020 Schrenkiella parvula HOM05D002111 ORTHO05D002160 1.2e-37 161.4 306 38.6
arahy.Tifrunner.gnm1.ann1.73PCSA Arachis hypogaea HOM05D002111 ORTHO05D002160 1.5e-37 161.0 300 40.7
VMungo1383G1142 Vigna mungo HOM05D002111 ORTHO05D002160 1.5e-37 161.0 293 41.6
Lsat_1_v5_gn_8_152961 Lactuca sativa HOM05D002111 ORTHO05D002160 3.4e-37 159.8 287 42.9
arahy.Tifrunner.gnm1.ann1.3BEA17 Arachis hypogaea HOM05D002111 ORTHO05D002160 1.3e-36 157.9 300 40.0
Glyma.08G135900 Glycine max HOM05D002111 ORTHO05D002160 1.3e-36 157.9 296 39.5
Lj6g0025700 Lotus japonicus HOM05D002111 ORTHO05D002160 2.9e-36 156.8 303 38.6
Oeu002175.1 Olea europaea HOM05D000391 ORTHO05D000293 6.5e-36 155.6 216 46.3
Migut.H02361 Erythranthe guttata HOM05D002111 ORTHO05D002160 1.9e-35 154.1 283 38.9
Nitab4.5_0003629g0050 Nicotiana tabacum HOM05D002111 ORTHO05D002160 3.2e-35 153.3 318 35.5
Psat5g090000 Pisum sativum HOM05D002111 ORTHO05D002160 4.2e-35 152.9 290 39.7
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 4.2e-35 152.9 296 39.2
Ca_16527_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 7.1e-35 152.1 206 46.6
Ca_16529_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 7.1e-35 152.1 206 46.6
Lsat_1_v5_gn_1_82200 Lactuca sativa HOM05D002111 ORTHO05D002160 7.1e-35 152.1 287 41.5
Hund16283 Selenicereus undatus HOM05D002111 ORTHO05D002160 1.2e-34 151.4 296 36.1
AUR62003791 Chenopodium quinoa HOM05D002111 ORTHO05D002160 7.9e-34 148.7 288 38.5
Cc07_g15260 Coffea canephora HOM05D002111 ORTHO05D002160 7.9e-34 148.7 286 40.9
Aqoxy5G01897 Aquilegia oxysepala HOM05D002111 ORTHO05D002160 1.0e-33 148.3 192 46.9
AL7G12110 Arabidopsis lyrata HOM05D002111 ORTHO05D002160 3.0e-33 146.7 309 37.2
Gohir.A12G087800 Gossypium hirsutum HOM05D002111 ORTHO05D002160 3.0e-33 146.7 127 59.1
Ca_17736_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 5.1e-33 146.0 303 37.3
HanXRQChr14g0445771 Helianthus annuus HOM05D002111 ORTHO05D002160 5.1e-33 146.0 289 38.4
Nitab4.5_0000104g0060 Nicotiana tabacum HOM05D002111 ORTHO05D002160 5.1e-33 146.0 319 35.4
Carub.0007s0180 Capsella rubella HOM05D002111 ORTHO05D002160 6.7e-33 145.6 309 37.2
EL10Ac6g15101 Beta vulgaris HOM05D002111 ORTHO05D002160 8.7e-33 145.2 312 36.2
Thhalv10024527m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 8.7e-33 145.2 321 36.1
ECA238G0151 Erigeron canadensis HOM05D002111 ORTHO05D002160 1.5e-32 144.4 282 37.6
DCAR_010085 Daucus carota HOM05D002111 ORTHO05D002160 1.9e-32 144.1 182 45.1
CDE10G1312 Ceratophyllum demersum HOM05D002111 ORTHO05D002160 2.5e-32 143.7 290 36.6
Lalb_Chr12g0203821 Lupinus albus HOM05D002111 ORTHO05D002160 3.3e-32 143.3 299 38.8
Lj4g0003424 Lotus japonicus HOM05D002111 ORTHO05D002160 5.7e-32 142.5 291 36.8
AT4G39870 Arabidopsis thaliana HOM05D002111 ORTHO05D002160 7.4e-32 142.1 313 35.8
Hund13626 Selenicereus undatus HOM05D002111 ORTHO05D002160 1.3e-31 141.4 301 36.5
vmacro12956 Vaccinium macrocarpon HOM05D002111 ORTHO05D002160 1.6e-31 141.0 282 39.7
CARHR246830 Cardamine hirsuta HOM05D002111 ORTHO05D002160 2.1e-31 140.6 329 37.1
Aa31LG6G15400 Aethionema arabicum HOM05D002111 ORTHO05D002160 8.2e-31 138.7 296 36.1
Zm00001eb194150 Zea mays HOM05D002111 ORTHO05D002160 8.2e-31 138.7 306 35.9
Actinidia06568 Actinidia chinensis HOM05D002111 ORTHO05D002160 1.8e-30 137.5 295 39.0
Os06g0221100 Oryza sativa ssp. japonica HOM05D002111 ORTHO05D002160 1.8e-30 137.5 287 34.1
Medtr8g090235 Medicago truncatula HOM05D002111 ORTHO05D002160 6.9e-30 135.6 295 35.9
arahy.Tifrunner.gnm1.ann1.BXB75N Arachis hypogaea HOM05D002111 ORTHO05D002160 1.5e-29 134.4 294 37.8
arahy.Tifrunner.gnm1.ann1.V4LFQL Arachis hypogaea HOM05D002111 ORTHO05D002160 2.0e-29 134.0 294 37.8
MBI02_g08726_MAGBIO Magnolia biondii HOM05D002111 ORTHO05D002160 2.6e-29 133.7 273 38.5
Sabra05G0062300 Salix brachista HOM05D002111 ORTHO05D002160 2.2e-28 130.6 147 54.4
Medtr3g087230 Medicago truncatula HOM05D002111 ORTHO05D002160 1.4e-27 127.9 301 34.6
unitig_749.g14225 Utricularia gibba HOM05D002111 ORTHO05D002160 1.4e-27 127.9 288 35.4
BcaNung02304 Brassica carinata HOM05D002111 ORTHO05D002160 1.9e-27 127.5 304 36.2
TPR.G17844 Trifolium pratense HOM05D002111 ORTHO05D002160 1.9e-27 127.5 298 34.2
BcaNung02303 Brassica carinata HOM05D002111 ORTHO05D002160 1.6e-26 124.4 303 35.0
C07p62820 Brassica napus HOM05D002111 ORTHO05D002160 1.6e-26 124.4 292 36.6
BcaNung03403 Brassica carinata HOM05D002111 ORTHO05D002160 2.7e-26 123.6 292 36.6
Glyma.01G027600 Glycine max HOM05D002111 ORTHO05D002160 2.7e-26 123.6 135 51.9
ATR0753G055 Amborella trichopoda HOM05D002111 ORTHO05D002160 7.9e-26 122.1 213 40.8
BcaB02g08312 Brassica carinata HOM05D002111 ORTHO05D002160 1.8e-25 120.9 168 45.8
A03p65850 Brassica napus HOM05D002111 ORTHO05D002160 2.3e-25 120.6 289 37.0
BraA03t15637Z Brassica rapa HOM05D002111 ORTHO05D002160 2.3e-25 120.6 289 37.0
Ah.03g143530 Amaranthus hybridus HOM05D002111 ORTHO05D002160 3.0e-25 120.2 293 34.5
Lj4C905G5 Lonicera japonica HOM05D002111 ORTHO05D002160 3.0e-25 120.2 185 44.9
BolC7t46696H Brassica oleracea HOM05D002111 ORTHO05D002160 1.9e-24 117.5 292 35.6
Psat7g054920 Pisum sativum HOM05D002111 ORTHO05D002160 4.3e-24 116.3 125 49.6
Zm00001eb372700 Zea mays HOM05D002111 ORTHO05D002160 5.7e-24 115.9 176 47.2
Os02g0754000 Oryza sativa ssp. japonica HOM05D002111 ORTHO05D002160 7.4e-24 115.5 287 35.9
RcHm_v2.0_Chr2g0113791 Rosa chinensis HOM05D002111 ORTHO05D002160 1.2e-21 108.2 144 50.0
C01p00880 Brassica napus HOM05D002111 ORTHO05D002160 1.4e-19 101.3 125 51.2
BcaNung00908 Brassica carinata HOM05D002111 ORTHO05D002160 1.9e-19 100.9 125 51.2
A01p00770 Brassica napus HOM05D002111 ORTHO05D002160 5.5e-19 99.4 119 50.4
BolC1t00089H Brassica oleracea HOM05D002111 ORTHO05D002160 1.2e-18 98.2 147 46.3
unitig_78.g29621 Utricularia gibba HOM05D002111 ORTHO05D002160 1.2e-18 98.2 268 32.1
BraA01t00080Z Brassica rapa HOM05D002111 ORTHO05D002160 1.6e-18 97.8 137 45.3
SEGI_01846 Sequoiadendron giganteum HOM05D002111 ORTHO05D002160 8.8e-17 92.0 198 32.3
BcaNung06393 Brassica carinata HOM05D002111 ORTHO05D002160 6.3e-15 85.9 57 71.9
Mapoly0104s0023 Marchantia polymorpha HOM05D002111 ORTHO05D002160 6.3e-15 85.9 189 36.0
Lsat_1_v5_gn_1_4140 Lactuca sativa HOM05D002111 ORTHO05D002160 9.1e-14 82.0 85 54.1
Lsat_1_v5_gn_3_117720 Lactuca sativa HOM05D002111 ORTHO05D002160 9.1e-14 82.0 85 54.1
Lsat_1_v5_gn_7_101900 Lactuca sativa HOM05D002111 ORTHO05D002160 9.1e-14 82.0 85 54.1
BcaB08g35126 Brassica carinata HOM05D002111 ORTHO05D002160 1.2e-13 81.6 108 46.3
HanXRQChr04g0116171 Helianthus annuus HOM05D002111 ORTHO05D002160 1.7e-12 77.8 56 66.1
AUR62002011 Chenopodium quinoa HOM05D002111 ORTHO05D002160 8.5e-12 75.5 250 30.4
Pp3c23_20180 Physcomitrium patens HOM05D002111 ORTHO05D002160 1.1e-11 75.1 220 33.6
SEGI_06063 Sequoiadendron giganteum HOM05D002111 ORTHO05D002160 1.4e-11 74.7 240 30.0
AagrBONN_evm.TU.Sc2ySwM_368.449 Anthoceros agrestis HOM05D002111 ORTHO05D002160 2.5e-11 73.9 212 30.7
RcHm_v2.0_Chr2g0114321 Rosa chinensis HOM05D002111 ORTHO05D002160 7.2e-11 72.4 41 87.8
SMO356G0755 Selaginella moellendorffii HOM05D002111 ORTHO05D002160 2.1e-10 70.9 63 60.3
Lj4A891T52 Lonicera japonica HOM05D002111 ORTHO05D002160 2.7e-10 70.5 205 32.7
arahy.Tifrunner.gnm1.ann1.9KCK2Z Arachis hypogaea HOM05D002111 ORTHO05D002160 4.7e-10 69.7 178 34.3
CBR_g49969 Chara braunii HOM05D002111 ORTHO05D002160 6.7e-09 65.9 161 37.3
SEGI_28340 Sequoiadendron giganteum HOM05D002111 ORTHO05D002160 2.6e-08 63.9 66 51.5
Nn1g01446 Nelumbo nucifera HOM05D002111 ORTHO05D002160 3.3e-08 63.5 88 43.2
Pp3c24_19410 Physcomitrium patens HOM05D002111 ORTHO05D002160 5.7e-08 62.8 212 29.7
Pp3c8_17090 Physcomitrium patens HOM05D002111 ORTHO05D002160 5.7e-08 62.8 222 28.8
Duzib151G0789 Durio zibethinus HOM05D002111 ORTHO05D002160 7.4e-08 62.4 114 34.2
SMO304G0114 Selaginella moellendorffii HOM05D002111 ORTHO05D002160 2.2e-07 60.8 49 57.1
RcHm_v2.0_Chr2g0113981 Rosa chinensis HOM05D002111 ORTHO05D002160 8.2e-07 58.9 35 82.9
COL.COLO4_15959 Corchorus olitorius HOM05D002111 ORTHO05D002160 1.8e-06 57.8 96 41.7
Duzib212G0868 Durio zibethinus HOM05D002111 ORTHO05D002160 1.8e-06 57.8 87 40.2
Gohir.D09G058900 Gossypium hirsutum HOM05D002111 ORTHO05D002160 2.4e-06 57.4 63 46.0
Gorai.006G073200 Gossypium raimondii HOM05D002111 ORTHO05D002160 2.4e-06 57.4 63 46.0
MD16G1226000 Malus domestica HOM05D002111 ORTHO05D002160 3.1e-06 57.0 91 36.3
TWI73G0653 Tripterygium wilfordii HOM05D002111 ORTHO05D002160 3.1e-06 57.0 77 42.9
TWI09G1302 Tripterygium wilfordii HOM05D002111 ORTHO05D002160 5.3e-06 56.2 70 44.3
QL06p020938 Quercus lobata HOM05D002111 ORTHO05D002160 7.0e-06 55.8 85 38.8
Sc25g0003540 Simmondsia chinensis HOM05D002111 ORTHO05D002160 7.0e-06 55.8 52 53.8
GSVIVG01027912001 Vitis vinifera HOM05D002111 ORTHO05D002160 7.0e-06 55.8 101 34.7
CANSAT78G1669 Cannabis sativa HOM05D002111 ORTHO05D002160 9.1e-06 55.5 70 42.9


User provided reference genes

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