Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0113811 Rosa chinensis HOM05D002501 ORTHO05D002952 2.5e-37 158.3 80 100.0
RcHm_v2.0_Chr5g0020001 Rosa chinensis HOM05D002501 ORTHO05D002952 1.9e-34 148.7 80 95.0
FAN16G3083 Fragaria x ananassa HOM05D002501 ORTHO05D002952 1.5e-31 139.0 80 87.5
FvH4_3g12200 Fragaria vesca HOM05D002501 ORTHO05D002952 1.3e-30 136.0 80 86.2
FAN25G2866 Fragaria x ananassa HOM05D002501 ORTHO05D002952 1.3e-30 136.0 80 85.0
FAN21G0714 Fragaria x ananassa HOM05D002501 ORTHO05D002952 5.0e-30 134.0 80 85.0
Prupe.4G111100 Prunus persica HOM05D002501 ORTHO05D002952 1.8e-24 115.5 81 76.5
MD10G1233900 Malus domestica HOM05D002501 ORTHO05D002952 4.5e-23 110.9 83 72.3
Atru.chr10.502 Acer truncatum HOM05D002501 ORTHO05D002952 4.2e-21 104.4 86 68.6
Ciclev10014844m.g Citrus clementina HOM05D002501 ORTHO05D002952 2.1e-20 102.1 86 66.3
QL11p017881 Quercus lobata HOM05D002501 ORTHO05D002952 4.7e-20 100.9 85 68.2
Cpa.g.sc135.16 Carica papaya HOM05D002501 ORTHO05D002952 1.0e-19 99.8 87 63.2
Cfa000718 Carpinus fangiana HOM05D002501 ORTHO05D002952 3.0e-19 98.2 86 65.1
COL.COLO4_30986 Corchorus olitorius HOM05D002501 ORTHO05D002952 5.1e-19 97.4 86 66.3
Gohir.A06G195900 Gossypium hirsutum HOM05D002501 ORTHO05D002952 5.1e-19 97.4 87 63.2
Gohir.D06G203400 Gossypium hirsutum HOM05D002501 ORTHO05D002952 5.1e-19 97.4 87 63.2
Gorai.010G237300 Gossypium raimondii HOM05D002501 ORTHO05D002952 5.1e-19 97.4 87 63.2
Medtr4g083980 Medicago truncatula HOM05D002501 ORTHO05D002952 6.7e-19 97.1 84 64.3
Thecc.06G141700 Theobroma cacao HOM05D002501 ORTHO05D002952 1.1e-18 96.3 86 60.5
Potri.015G121000 Populus trichocarpa HOM05D002501 ORTHO05D002952 1.5e-18 95.9 86 62.8
MD05G1252800 Malus domestica HOM05D002501 ORTHO05D002952 2.0e-18 95.5 80 65.0
CANSAT35G1934 Cannabis sativa HOM05D002501 ORTHO05D002952 4.4e-18 94.4 88 59.1
Duzib235G1346 Durio zibethinus HOM05D002501 ORTHO05D002952 4.4e-18 94.4 85 63.5
Eucgr.E01878 Eucalyptus grandis HOM05D002501 ORTHO05D002952 5.7e-18 94.0 86 64.0
THA.LOC104811523 Tarenaya hassleriana HOM05D002501 ORTHO05D002952 7.4e-18 93.6 86 61.6
Glyma.07G221800 Glycine max HOM05D002501 ORTHO05D002952 9.7e-18 93.2 84 65.5
TWI38G1296 Tripterygium wilfordii HOM05D002501 ORTHO05D002952 9.7e-18 93.2 86 61.6
Sabra15G0137500 Salix brachista HOM05D002501 ORTHO05D002952 1.7e-17 92.4 86 60.5
GSVIVG01012079001 Vitis vinifera HOM05D002501 ORTHO05D002952 1.7e-17 92.4 78 59.0
TPR.G20991 Trifolium pratense HOM05D002501 ORTHO05D002952 2.2e-17 92.0 84 60.7
Thhalv10024879m.g Eutrema salsugineum HOM05D002501 ORTHO05D002952 2.8e-17 91.7 86 59.3
Glyma.20G020800 Glycine max HOM05D002501 ORTHO05D002952 4.8e-17 90.9 84 64.3
CiPaw.09G078100 Carya illinoinensis HOM05D002501 ORTHO05D002952 6.3e-17 90.5 82 61.0
CsaV3_1G046370 Cucumis sativus L. HOM05D002501 ORTHO05D002952 8.2e-17 90.1 87 59.8
MELO3C021759.2 Cucumis melo HOM05D002501 ORTHO05D002952 1.4e-16 89.4 87 60.9
Potri.012G121596 Populus trichocarpa HOM05D002501 ORTHO05D002952 1.4e-16 89.4 89 60.7
Dinv13252 Davidia involucrata HOM05D002501 ORTHO05D002952 1.8e-16 89.0 86 55.8
Psat7g130640 Pisum sativum HOM05D002501 ORTHO05D002952 1.8e-16 89.0 84 63.1
Psat7g130720 Pisum sativum HOM05D002501 ORTHO05D002952 1.8e-16 89.0 84 63.1
Psat7g130880 Pisum sativum HOM05D002501 ORTHO05D002952 1.8e-16 89.0 84 63.1
Ca_18767_v3 Cicer arietinum L. HOM05D002501 ORTHO05D002952 2.4e-16 88.6 84 63.1
Aa31LG9G8160 Aethionema arabicum HOM05D002501 ORTHO05D002952 3.1e-16 88.2 86 58.1
CARHR226640 Cardamine hirsuta HOM05D002501 ORTHO05D002952 4.1e-16 87.8 86 60.5
Actinidia22393 Actinidia chinensis HOM05D002501 ORTHO05D002952 7.0e-16 87.0 86 53.5
Duzib192G0239 Durio zibethinus HOM05D002501 ORTHO05D002952 7.0e-16 87.0 85 57.6
vmacro03515 Vaccinium macrocarpon HOM05D002501 ORTHO05D002952 1.2e-15 86.3 86 55.8
ClCG01G009420 Citrullus lanatus HOM05D002501 ORTHO05D002952 2.0e-15 85.5 87 58.6
Nitab4.5_0008482g0030 Nicotiana tabacum HOM05D002501 ORTHO05D002952 2.0e-15 85.5 86 55.8
Peaxi162Scf00149g00722 Petunia axillaris HOM05D002501 ORTHO05D002952 2.0e-15 85.5 86 53.5
Carub.0007s2135 Capsella rubella HOM05D002501 ORTHO05D002952 2.6e-15 85.1 86 60.5
Gohir.D10G046200 Gossypium hirsutum HOM05D002501 ORTHO05D002952 2.6e-15 85.1 86 58.1
Gorai.011G049000 Gossypium raimondii HOM05D002501 ORTHO05D002952 2.6e-15 85.1 86 58.1
Rhsim13G0131900 Rhododendron simsii HOM05D002501 ORTHO05D002952 2.6e-15 85.1 83 57.8
AL7G34220 Arabidopsis lyrata HOM05D002501 ORTHO05D002952 3.5e-15 84.7 86 58.1
CSS0027418 Camellia sinensis var. sinensis HOM05D002501 ORTHO05D002952 3.5e-15 84.7 86 57.0
Nitab4.5_0001288g0020 Nicotiana tabacum HOM05D002501 ORTHO05D002952 4.5e-15 84.3 86 55.8
Lj2C352T14 Lonicera japonica HOM05D002501 ORTHO05D002952 5.9e-15 84.0 81 54.3
BcaNung02546 Brassica carinata HOM05D002501 ORTHO05D002952 7.7e-15 83.6 86 55.8
C07p50570 Brassica napus HOM05D002501 ORTHO05D002952 7.7e-15 83.6 86 55.8
Lj1C1144G8 Lonicera japonica HOM05D002501 ORTHO05D002952 7.7e-15 83.6 86 53.5
Sp7g18360 Schrenkiella parvula HOM05D002501 ORTHO05D002952 7.7e-15 83.6 86 54.7
DCAR_001322 Daucus carota HOM05D002501 ORTHO05D002952 1.0e-14 83.2 88 52.3
A01p11730 Brassica napus HOM05D002501 ORTHO05D002952 1.3e-14 82.8 86 54.7
BraA01t01115Z Brassica rapa HOM05D002501 ORTHO05D002952 1.3e-14 82.8 86 54.7
Lalb_Chr16g0385271 Lupinus albus HOM05D002501 ORTHO05D002952 1.3e-14 82.8 84 59.5
Sed0014126 Sechium edule HOM05D002501 ORTHO05D002952 1.3e-14 82.8 87 57.5
A03p52010 Brassica napus HOM05D002501 ORTHO05D002952 1.7e-14 82.4 86 55.8
Gohir.A10G044900 Gossypium hirsutum HOM05D002501 ORTHO05D002952 1.7e-14 82.4 85 55.3
BolC7t45559H Brassica oleracea HOM05D002501 ORTHO05D002952 2.2e-14 82.0 86 54.7
Lj4g0014554 Lotus japonicus HOM05D002501 ORTHO05D002952 2.2e-14 82.0 85 58.8
PGSC0003DMG400010352 Solanum tuberosum HOM05D002501 ORTHO05D002952 2.2e-14 82.0 86 54.7
BraA03t14288Z Brassica rapa HOM05D002501 ORTHO05D002952 2.9e-14 81.6 86 55.8
BraA03t14113Z Brassica rapa HOM05D002501 ORTHO05D002952 5.0e-14 80.9 86 54.7
arahy.Tifrunner.gnm1.ann1.YX69JE Arachis hypogaea HOM05D002501 ORTHO05D002952 6.5e-14 80.5 80 57.5
AT4G19860 Arabidopsis thaliana HOM05D002501 ORTHO05D002952 1.1e-13 79.7 85 56.5
Lsat_1_v5_gn_8_117661 Lactuca sativa HOM05D002501 ORTHO05D002952 1.1e-13 79.7 78 52.6
PGR042G2594 Punica granatum HOM05D002501 ORTHO05D002952 1.1e-13 79.7 82 54.9
Solyc02g068920.3 Solanum lycopersicum HOM05D002501 ORTHO05D002952 1.1e-13 79.7 86 53.5
BcaNung01747 Brassica carinata HOM05D002501 ORTHO05D002952 1.5e-13 79.3 86 57.0
Aqoxy1G01480 Aquilegia oxysepala HOM05D002501 ORTHO05D002952 3.2e-13 78.2 84 52.4
Sopen02g018020 Solanum pennellii HOM05D002501 ORTHO05D002952 3.2e-13 78.2 81 53.1
Cc09_g06170 Coffea canephora HOM05D002501 ORTHO05D002952 5.5e-13 77.4 86 50.0
BcaC09g51362 Brassica carinata HOM05D002501 ORTHO05D002952 7.2e-13 77.0 86 52.3
C01p13910 Brassica napus HOM05D002501 ORTHO05D002952 7.2e-13 77.0 86 52.3
BolC1t01359H Brassica oleracea HOM05D002501 ORTHO05D002952 7.2e-13 77.0 86 52.3
Phvul.002G098800 Phaseolus vulgaris HOM05D002501 ORTHO05D002952 1.6e-12 75.9 84 53.6
VMungo0251G2180 Vigna mungo HOM05D002501 ORTHO05D002952 1.6e-12 75.9 84 56.0
CAN.G149.53 Capsicum annuum HOM05D002501 ORTHO05D002952 2.1e-12 75.5 86 50.0
arahy.Tifrunner.gnm1.ann1.Q2XHCD Arachis hypogaea HOM05D002501 ORTHO05D002952 2.7e-12 75.1 80 53.8
SalBow7G0928 Salvia bowleyana HOM05D002501 ORTHO05D002952 6.1e-12 73.9 86 47.7
MBI18_g12211_MAGBIO Magnolia biondii HOM05D002501 ORTHO05D002952 1.0e-11 73.2 77 49.4
Oeu052671.1 Olea europaea HOM05D002501 ORTHO05D002952 1.0e-11 73.2 86 45.3
ECA232G4524 Erigeron canadensis HOM05D002501 ORTHO05D009759 4.0e-11 71.2 82 50.0
Oeu060349.1 Olea europaea HOM05D002501 ORTHO05D002952 1.5e-10 69.3 87 44.8
Sc24g0002630 Simmondsia chinensis HOM05D002501 ORTHO05D002952 2.0e-10 68.9 83 48.2
Nn7g38135 Nelumbo nucifera HOM05D002501 ORTHO05D002952 4.4e-10 67.8 82 48.8
Zm00001eb070790 Zea mays HOM05D002501 ORTHO05D002952 3.7e-09 64.7 81 44.4
MSTRG.16343 Avicennia marina HOM05D002501 ORTHO05D002952 4.8e-09 64.3 87 49.4
Migut.M01976 Erythranthe guttata HOM05D002501 ORTHO05D002952 1.8e-08 62.4 85 43.5
HanXRQChr09g0258261 Helianthus annuus HOM05D002501 ORTHO05D002952 2.4e-08 62.0 79 46.8
Os04g0615100 Oryza sativa ssp. japonica HOM05D002501 ORTHO05D002952 3.1e-08 61.6 85 40.0
Manes.03G069300 Manihot esculenta HOM05D002501 ORTHO05D002952 7.0e-08 60.5 77 48.1
SGA_v2.0_scaffold341G49376 Striga asiatica HOM05D002501 ORTHO05D002952 2.7e-07 58.5 77 44.2
Psat5g267760 Pisum sativum HOM05D002501 ORTHO05D329595 1.3e-06 56.2 64 56.2
ATR0763G244 Amborella trichopoda HOM05D002501 ORTHO05D002952 3.8e-06 54.7 80 40.0


User provided reference genes

Program Settings