Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0113791 Rosa chinensis HOM05D002111 ORTHO05D002160 1.2e-52 209.5 104 100.0
RcHm_v2.0_Chr2g0114361 Rosa chinensis HOM05D002111 ORTHO05D002160 2.3e-35 152.1 91 89.0
RcHm_v2.0_Chr2g0114391 Rosa chinensis HOM05D002111 ORTHO05D002160 1.1e-32 143.3 89 86.5
FAN23G1977 Fragaria x ananassa HOM05D002111 ORTHO05D002160 2.5e-29 132.1 89 79.8
FAN28G1556 Fragaria x ananassa HOM05D002111 ORTHO05D002160 1.8e-27 125.9 90 76.7
MD15G1324300 Malus domestica HOM05D002111 ORTHO05D002160 2.4e-24 115.5 90 70.0
RcHm_v2.0_Chr2g0113891 Rosa chinensis HOM05D002111 ORTHO05D002160 1.3e-22 109.8 144 50.0
FAN19G2413 Fragaria x ananassa HOM05D002111 ORTHO05D002160 1.7e-22 109.4 90 67.8
FvH4_1g20920 Fragaria vesca HOM05D002111 ORTHO05D002160 2.9e-22 108.6 90 67.8
FAN26G0864 Fragaria x ananassa HOM05D002111 ORTHO05D002160 1.1e-21 106.7 89 67.4
Prupe.6G186700 Prunus persica HOM05D002111 ORTHO05D002160 6.7e-19 97.4 81 67.9
Ciclev10025897m.g Citrus clementina HOM05D002111 ORTHO05D002160 4.8e-17 91.3 88 56.8
Eucgr.H04786 Eucalyptus grandis HOM05D002111 ORTHO05D002160 6.3e-17 90.9 87 63.2
Cfa002666 Carpinus fangiana HOM05D002111 ORTHO05D002160 1.1e-16 90.1 88 56.8
Thecc.01G101700 Theobroma cacao HOM05D002111 ORTHO05D002160 1.1e-16 90.1 83 60.2
PGR102G2983 Punica granatum HOM05D002111 ORTHO05D002160 1.4e-16 89.7 89 59.6
QL06p049551 Quercus lobata HOM05D002111 ORTHO05D002160 1.8e-16 89.4 91 58.2
Actinidia20017 Actinidia chinensis HOM05D002111 ORTHO05D002160 1.2e-15 86.7 85 61.2
Duzib264G1191 Durio zibethinus HOM05D002111 ORTHO05D002160 3.4e-15 85.1 83 57.8
Gohir.A02G143300 Gossypium hirsutum HOM05D002111 ORTHO05D002160 3.4e-15 85.1 83 60.2
Gohir.D03G037200 Gossypium hirsutum HOM05D002111 ORTHO05D002160 3.4e-15 85.1 83 60.2
Gorai.003G039000 Gossypium raimondii HOM05D002111 ORTHO05D002160 3.4e-15 85.1 83 60.2
MSTRG.23342 Avicennia marina HOM05D002111 ORTHO05D002160 5.9e-15 84.3 77 59.7
Hma1.2p1_0047F.1_g027840 Hydrangea macrophylla HOM05D002111 ORTHO05D002160 7.7e-15 84.0 88 56.8
Manes.12G135100 Manihot esculenta HOM05D002111 ORTHO05D002160 1.7e-14 82.8 89 52.8
CSS0037925 Camellia sinensis var. sinensis HOM05D002111 ORTHO05D002160 2.9e-14 82.0 90 56.7
Haze_24935 Corylus avellana HOM05D002111 ORTHO05D002160 3.8e-14 81.6 90 53.3
Duzib147G0507 Durio zibethinus HOM05D002111 ORTHO05D002160 1.1e-13 80.1 85 57.6
Sp7g36020 Schrenkiella parvula HOM05D002111 ORTHO05D002160 2.5e-13 79.0 86 53.5
CiPaw.04G099300 Carya illinoinensis HOM05D002111 ORTHO05D002160 3.2e-13 78.6 92 51.1
AUR62002011 Chenopodium quinoa HOM05D002111 ORTHO05D002160 4.2e-13 78.2 79 59.5
Gorai.008G096200 Gossypium raimondii HOM05D002111 ORTHO05D002160 4.2e-13 78.2 84 53.6
CsaV3_4G008920 Cucumis sativus L. HOM05D002111 ORTHO05D002160 5.5e-13 77.8 95 50.5
TWI53G1715 Tripterygium wilfordii HOM05D002111 ORTHO05D002160 5.5e-13 77.8 91 51.6
CANSAT01G1806 Cannabis sativa HOM05D002111 ORTHO05D002160 7.2e-13 77.4 88 53.4
Gohir.D12G085900 Gossypium hirsutum HOM05D002111 ORTHO05D002160 9.4e-13 77.0 84 52.4
CiPaw.03G141700 Carya illinoinensis HOM05D002111 ORTHO05D002160 1.2e-12 76.6 91 52.7
CARHR246830 Cardamine hirsuta HOM05D002111 ORTHO05D002160 1.6e-12 76.3 80 56.2
Nitab4.5_0003629g0050 Nicotiana tabacum HOM05D002111 ORTHO05D002160 2.1e-12 75.9 85 55.3
arahy.Tifrunner.gnm1.ann1.BXB75N Arachis hypogaea HOM05D002111 ORTHO05D002160 2.7e-12 75.5 104 47.1
Nitab4.5_0000104g0060 Nicotiana tabacum HOM05D002111 ORTHO05D002160 2.7e-12 75.5 83 55.4
vmacro12956 Vaccinium macrocarpon HOM05D002111 ORTHO05D002160 2.7e-12 75.5 90 53.3
arahy.Tifrunner.gnm1.ann1.V4LFQL Arachis hypogaea HOM05D002111 ORTHO05D002160 3.6e-12 75.1 107 45.8
Peaxi162Scf00212g00717 Petunia axillaris HOM05D002111 ORTHO05D002160 3.6e-12 75.1 87 54.0
Phvul.002G255900 Phaseolus vulgaris HOM05D002111 ORTHO05D002160 3.6e-12 75.1 84 53.6
Sabra07G0076900 Salix brachista HOM05D002111 ORTHO05D002160 3.6e-12 75.1 87 54.0
Potri.007G092700 Populus trichocarpa HOM05D002111 ORTHO05D002160 4.6e-12 74.7 87 54.0
Atru.chr4.66 Acer truncatum HOM05D002111 ORTHO05D002160 6.1e-12 74.3 91 52.7
AUR62003791 Chenopodium quinoa HOM05D002111 ORTHO05D002160 6.1e-12 74.3 79 57.0
Thhalv10024527m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 6.1e-12 74.3 79 54.4
Sed0022569 Sechium edule HOM05D002111 ORTHO05D002160 7.9e-12 73.9 85 55.3
MELO3C018977.2 Cucumis melo HOM05D002111 ORTHO05D002160 1.0e-11 73.6 91 51.6
THA.LOC104824875 Tarenaya hassleriana HOM05D002111 ORTHO05D002160 1.4e-11 73.2 81 50.6
Lalb_Chr12g0203821 Lupinus albus HOM05D002111 ORTHO05D002160 1.8e-11 72.8 86 52.3
Solyc04g055180.3 Solanum lycopersicum HOM05D002111 ORTHO05D002160 1.8e-11 72.8 90 50.0
Sopen04g025040 Solanum pennellii HOM05D002111 ORTHO05D002160 1.8e-11 72.8 90 50.0
ClCG10G008810 Citrullus lanatus HOM05D002111 ORTHO05D002160 2.3e-11 72.4 86 54.7
AL7G12110 Arabidopsis lyrata HOM05D002111 ORTHO05D002160 3.0e-11 72.0 79 53.2
PGSC0003DMG400001887 Solanum tuberosum HOM05D002111 ORTHO05D002160 3.9e-11 71.6 90 50.0
CAN.G842.1 Capsicum annuum HOM05D002111 ORTHO05D002160 5.1e-11 71.2 88 48.9
CDE10G1312 Ceratophyllum demersum HOM05D002111 ORTHO05D002160 5.1e-11 71.2 81 50.6
Rhsim10G0163000 Rhododendron simsii HOM05D002111 ORTHO05D002160 5.1e-11 71.2 91 50.5
Sc03g0002090 Simmondsia chinensis HOM05D002111 ORTHO05D002160 5.1e-11 71.2 73 54.8
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 5.1e-11 71.2 85 50.6
AT4G39870 Arabidopsis thaliana HOM05D002111 ORTHO05D002160 6.7e-11 70.9 81 53.1
arahy.Tifrunner.gnm1.ann1.9KCK2Z Arachis hypogaea HOM05D002111 ORTHO05D002160 6.7e-11 70.9 88 53.4
TAR625G1521 Trochodendron aralioides HOM05D002111 ORTHO05D002160 8.8e-11 70.5 81 53.1
Ah.03g143530 Amaranthus hybridus HOM05D002111 ORTHO05D002160 1.1e-10 70.1 77 54.5
Potri.005G075800 Populus trichocarpa HOM05D002111 ORTHO05D002160 1.1e-10 70.1 87 48.3
MBI02_g08726_MAGBIO Magnolia biondii HOM05D002111 ORTHO05D002160 1.5e-10 69.7 95 50.5
TAR381G0049 Trochodendron aralioides HOM05D002111 ORTHO05D002160 1.5e-10 69.7 87 51.7
Migut.H02361 Erythranthe guttata HOM05D002111 ORTHO05D002160 2.0e-10 69.3 74 52.7
Glyma.08G135900 Glycine max HOM05D002111 ORTHO05D002160 3.3e-10 68.6 86 48.8
Ca_17736_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 5.7e-10 67.8 82 51.2
RcHm_v2.0_Chr2g0114321 Rosa chinensis HOM05D002111 ORTHO05D002160 5.7e-10 67.8 39 84.6
Lsat_1_v5_gn_1_82200 Lactuca sativa HOM05D002111 ORTHO05D002160 7.4e-10 67.4 97 43.3
Glyma.11G240100 Glycine max HOM05D002111 ORTHO05D002160 9.7e-10 67.0 95 46.3
EL10Ac6g15101 Beta vulgaris HOM05D002111 ORTHO05D002160 1.3e-09 66.6 77 53.2
Medtr8g090235 Medicago truncatula HOM05D002111 ORTHO05D002160 1.3e-09 66.6 82 51.2
Hund13626 Selenicereus undatus HOM05D002111 ORTHO05D002160 1.3e-09 66.6 94 50.0
Hund16283 Selenicereus undatus HOM05D002111 ORTHO05D002160 1.3e-09 66.6 82 51.2
Glyma.18G017300 Glycine max HOM05D002111 ORTHO05D002160 2.2e-09 65.9 93 44.1
Carub.0007s0180 Capsella rubella HOM05D002111 ORTHO05D002160 3.7e-09 65.1 79 46.8
Lj4g0003424 Lotus japonicus HOM05D002111 ORTHO05D002160 3.7e-09 65.1 84 48.8
COL.COLO4_09962 Corchorus olitorius HOM05D002111 ORTHO05D002160 4.8e-09 64.7 82 47.6
Lsat_1_v5_gn_8_152961 Lactuca sativa HOM05D002111 ORTHO05D002160 6.3e-09 64.3 85 50.6
arahy.Tifrunner.gnm1.ann1.73PCSA Arachis hypogaea HOM05D002111 ORTHO05D002160 1.4e-08 63.2 88 48.9
SGA_v2.0_scaffold111G31519 Striga asiatica HOM05D002111 ORTHO05D002160 1.4e-08 63.2 103 39.8
arahy.Tifrunner.gnm1.ann1.3BEA17 Arachis hypogaea HOM05D002111 ORTHO05D002160 2.4e-08 62.4 88 48.9
PSO210G4458 Papaver somniferum HOM05D002111 ORTHO05D002160 3.1e-08 62.0 73 49.3
BcaNung03403 Brassica carinata HOM05D002111 ORTHO05D002160 5.3e-08 61.2 75 53.3
C07p62820 Brassica napus HOM05D002111 ORTHO05D002160 5.3e-08 61.2 75 53.3
DCAR_010085 Daucus carota HOM05D002111 ORTHO05D002160 5.3e-08 61.2 76 46.1
HanXRQChr14g0445771 Helianthus annuus HOM05D002111 ORTHO05D002160 6.9e-08 60.8 85 43.5
PSO447G0066 Papaver somniferum HOM05D002111 ORTHO05D002160 6.9e-08 60.8 73 49.3
THA.LOC104807695 Tarenaya hassleriana HOM05D002111 ORTHO05D002160 6.9e-08 60.8 84 48.8
ATR0753G055 Amborella trichopoda HOM05D002111 ORTHO05D002160 9.1e-08 60.5 83 45.8
Ca_16527_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 9.1e-08 60.5 90 46.7
Ca_16529_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 9.1e-08 60.5 90 46.7
ECA238G0151 Erigeron canadensis HOM05D002111 ORTHO05D002160 9.1e-08 60.5 90 42.2
Aa31LG6G15400 Aethionema arabicum HOM05D002111 ORTHO05D002160 1.5e-07 59.7 79 45.6
RcHm_v2.0_Chr2g0113981 Rosa chinensis HOM05D002111 ORTHO05D002160 2.0e-07 59.3 45 71.1
VMungo1383G1142 Vigna mungo HOM05D002111 ORTHO05D002160 2.6e-07 58.9 96 44.8
BcaNung02304 Brassica carinata HOM05D002111 ORTHO05D002160 3.4e-07 58.5 79 48.1
Zm00001eb194150 Zea mays HOM05D002111 ORTHO05D002160 7.7e-07 57.4 86 39.5
Phvul.001G252100 Phaseolus vulgaris HOM05D002111 ORTHO05D002160 1.0e-06 57.0 95 43.2
unitig_749.g14225 Utricularia gibba HOM05D002111 ORTHO05D002160 1.3e-06 56.6 78 44.9
unitig_78.g29621 Utricularia gibba HOM05D002111 ORTHO05D002160 1.3e-06 56.6 78 44.9
A03p65850 Brassica napus HOM05D002111 ORTHO05D002160 2.2e-06 55.8 74 51.4
BolC7t46696H Brassica oleracea HOM05D002111 ORTHO05D002160 2.2e-06 55.8 75 50.7
BraA03t15637Z Brassica rapa HOM05D002111 ORTHO05D002160 2.2e-06 55.8 74 51.4
Aqoxy5G01897 Aquilegia oxysepala HOM05D002111 ORTHO05D002160 2.9e-06 55.5 72 47.2
Medtr3g087230 Medicago truncatula HOM05D002111 ORTHO05D002160 6.5e-06 54.3 91 42.9
Psat5g090000 Pisum sativum HOM05D002111 ORTHO05D002160 8.5e-06 53.9 91 41.8


User provided reference genes

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