Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 2.0e-89 332.4 169 100.0
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 8.2e-75 283.9 170 86.5
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.1e-74 281.6 169 85.8
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.9e-74 280.8 170 85.9
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 3.4e-73 278.5 169 85.2
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.0e-64 248.1 169 78.1
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.9e-63 246.1 169 75.1
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 6.1e-62 241.1 174 71.8
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 9.7e-60 233.8 174 70.1
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 1.7e-56 223.0 172 68.6
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 5.0e-56 221.5 180 66.1
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 5.0e-56 221.5 170 70.0
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 3.2e-55 218.8 175 66.3
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 3.2e-55 218.8 175 66.3
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 3.2e-55 218.8 173 67.6
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 4.2e-55 218.4 188 64.9
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 4.2e-55 218.4 173 68.2
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 7.2e-55 217.6 166 68.7
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.2e-54 216.9 172 67.4
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.2e-54 216.9 172 66.3
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.2e-54 216.9 173 68.8
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.6e-54 216.5 172 65.7
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.1e-54 216.1 174 64.9
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 2.7e-54 215.7 169 67.5
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 4.7e-54 214.9 172 68.0
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 6.1e-54 214.5 169 68.0
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 8.0e-54 214.2 176 67.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.0e-53 213.8 166 68.1
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.0e-53 213.8 180 65.6
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.0e-53 213.8 171 66.1
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 1.4e-53 213.4 169 69.8
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.8e-53 213.0 177 64.4
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 2.3e-53 212.6 173 64.2
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 4.0e-53 211.8 167 67.7
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.2e-52 210.3 176 65.9
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.2e-52 210.3 177 67.2
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.2e-52 210.3 185 62.7
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.5e-52 209.9 182 61.5
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.0e-52 209.5 178 65.2
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.0e-52 209.5 176 65.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 5.7e-52 208.0 178 64.0
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 5.7e-52 208.0 188 61.7
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 5.7e-52 208.0 176 63.6
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.7e-52 207.2 175 64.0
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.7e-51 206.5 177 64.4
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.7e-51 206.5 169 64.5
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 2.2e-51 206.1 185 63.2
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 2.2e-51 206.1 185 63.2
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.7e-51 205.3 182 64.3
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.7e-51 205.3 175 66.3
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 4.8e-51 204.9 176 64.2
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 8.3e-51 204.1 179 62.6
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.1e-50 203.8 178 62.9
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.1e-50 203.8 176 64.2
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.1e-50 203.8 176 63.6
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.1e-50 203.8 150 71.3
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.1e-50 203.8 169 66.9
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.1e-50 203.8 171 64.3
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.4e-50 203.4 172 62.8
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 1.8e-50 203.0 184 62.5
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.8e-50 203.0 185 61.1
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.8e-50 203.0 179 63.1
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.8e-50 203.0 157 70.1
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.4e-50 202.6 169 65.1
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 3.1e-50 202.2 179 62.6
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 3.1e-50 202.2 179 62.6
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 4.1e-50 201.8 179 63.1
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 4.1e-50 201.8 166 63.9
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 7.0e-50 201.1 134 76.1
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 7.0e-50 201.1 175 64.0
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 9.1e-50 200.7 179 61.5
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 9.1e-50 200.7 183 61.2
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 9.1e-50 200.7 137 74.5
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 1.2e-49 200.3 183 61.2
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 1.2e-49 200.3 183 61.2
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.6e-49 199.9 186 60.2
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 2.0e-49 199.5 186 58.6
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 2.7e-49 199.1 175 64.0
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 3.5e-49 198.7 171 63.7
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.5e-49 198.4 178 59.0
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.5e-49 198.4 178 59.0
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.5e-49 198.4 173 61.3
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 5.9e-49 198.0 167 61.7
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 5.9e-49 198.0 179 62.0
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 5.9e-49 198.0 175 62.9
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.0e-48 197.2 168 61.3
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 2.2e-48 196.1 179 60.9
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.2e-48 196.1 179 61.5
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.2e-48 196.1 179 61.5
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.2e-48 196.1 144 69.4
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.2e-48 196.1 190 57.4
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 2.9e-48 195.7 181 59.7
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.0e-48 194.9 170 62.9
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.0e-48 194.9 170 62.9
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.0e-48 194.9 170 62.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 8.5e-48 194.1 194 56.7
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.1e-47 193.7 188 59.0
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.9e-47 193.0 184 59.2
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.9e-47 193.0 163 63.8
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 5.5e-47 191.4 160 63.8
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.6e-46 189.9 175 61.1
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 2.1e-46 189.5 189 56.1
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 4.7e-46 188.3 149 67.8
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.4e-45 186.8 175 60.6
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 2.0e-44 183.0 168 57.7
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.0e-44 183.0 144 69.4
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.6e-44 182.6 186 54.8
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 4.4e-44 181.8 167 59.9
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 4.4e-44 181.8 190 56.8
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 7.5e-44 181.0 169 58.6
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-43 180.3 170 59.4
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 3.7e-43 178.7 166 57.2
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.3e-40 170.2 111 73.0
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 2.5e-39 166.0 149 60.4
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.8e-37 159.8 188 46.8
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 3.0e-37 159.1 192 46.9
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 3.4e-36 155.6 133 58.6
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 3.7e-35 152.1 122 64.8
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 4.9e-35 151.8 88 83.0
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.5e-33 145.6 135 62.2
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.7e-32 143.3 138 58.7
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 3.6e-30 135.6 144 56.2
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.8e-29 133.3 95 71.6
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.2e-29 131.7 118 56.8
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 8.9e-29 131.0 103 64.1
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.2e-28 130.6 104 63.5
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 2.0e-28 129.8 103 63.1
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 5.8e-28 128.3 103 62.1
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 9.8e-28 127.5 104 61.5
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 2.2e-27 126.3 109 56.9
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.4e-26 123.6 116 54.3
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 4.1e-26 122.1 91 68.1
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 2.7e-25 119.4 103 59.2
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 7.3e-23 111.3 111 50.5
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.8e-22 109.4 102 53.9
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.4e-21 107.1 111 53.2
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 3.1e-21 105.9 102 54.9
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 6.8e-21 104.8 101 54.5
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.2e-20 104.0 91 54.9
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 2.0e-20 103.2 99 54.5
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 5.8e-20 101.7 121 48.8
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.5e-20 101.3 102 59.8
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.3e-19 100.5 166 40.4
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 8.3e-19 97.8 69 68.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.4e-18 97.1 145 45.5
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.7e-16 90.1 64 70.3
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.7e-16 90.1 81 56.8
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.3e-16 89.7 114 46.5
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 8.6e-16 87.8 67 65.7
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.1e-15 87.4 89 52.8
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.9e-15 86.7 96 42.7
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 2.0e-12 76.6 87 37.9


User provided reference genes

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