Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 7.6e-239 830.1 420 100.0
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 2.4e-200 702.2 403 88.3
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.5e-181 639.8 403 81.6
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 5.2e-179 631.3 400 78.8
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.4e-176 623.2 401 77.1
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.1e-159 566.2 403 75.2
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 4.0e-139 498.8 404 64.1
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 7.6e-138 494.6 404 62.9
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 9.9e-138 494.2 413 67.6
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 4.9e-137 491.9 406 60.1
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.3e-134 483.8 400 62.5
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 3.9e-134 482.3 403 59.8
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 5.1e-134 481.9 411 60.6
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.9e-133 479.9 444 56.5
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 4.3e-133 478.8 402 60.0
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 2.8e-132 476.1 354 66.7
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 2.4e-131 473.0 408 60.5
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 4.0e-131 472.2 402 59.5
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 9.0e-131 471.1 398 61.6
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 6.4e-129 464.9 404 59.4
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 8.4e-129 464.5 405 58.8
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 1.9e-128 463.4 396 59.3
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 4.2e-128 462.2 402 57.7
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 2.1e-127 459.9 404 59.2
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 2.7e-127 459.5 401 58.4
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 1.0e-126 457.6 405 59.0
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 2.3e-126 456.4 401 57.6
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 3.9e-126 455.7 402 58.5
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 3.9e-126 455.7 404 59.2
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 1.5e-125 453.8 401 58.1
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 4.3e-125 452.2 401 57.1
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 1.3e-124 450.7 410 58.5
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 2.8e-124 449.5 436 54.1
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 4.8e-124 448.7 405 57.3
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 4.8e-124 448.7 401 56.6
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 6.2e-124 448.4 403 57.8
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 1.4e-123 447.2 414 57.5
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.8e-123 446.8 410 57.8
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 3.1e-123 446.0 406 56.9
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 6.9e-123 444.9 396 59.3
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 9.0e-123 444.5 402 55.0
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 8.4e-121 438.0 404 57.4
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 8.4e-121 438.0 453 52.1
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.1e-120 437.6 410 55.9
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.4e-120 437.2 407 55.8
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 7.1e-120 434.9 413 58.6
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 9.3e-120 434.5 404 56.4
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 9.3e-120 434.5 407 57.7
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 1.3e-118 430.6 398 55.8
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 5.1e-118 428.7 414 54.1
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.5e-117 427.2 403 54.1
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 7.4e-117 424.9 440 53.9
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 1.3e-116 424.1 414 56.3
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 1.3e-116 424.1 367 59.9
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 2.8e-116 422.9 476 49.6
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.8e-115 420.2 424 53.5
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 3.4e-114 416.0 526 46.8
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 5.9e-114 415.2 403 54.3
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 6.5e-113 411.8 393 55.5
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 4.2e-112 409.1 359 57.7
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 2.7e-111 406.4 424 52.8
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 1.8e-110 403.7 420 52.4
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.1e-107 394.4 407 53.3
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 2.2e-105 386.7 326 63.2
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 3.8e-105 386.0 462 49.8
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 6.5e-105 385.2 311 64.3
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 2.7e-103 379.8 411 50.9
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 2.0e-101 373.6 417 49.2
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.8e-99 367.1 419 48.7
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 1.5e-98 364.0 394 51.0
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 2.0e-98 363.6 304 62.2
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 2.6e-98 363.2 326 60.1
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 7.7e-98 361.7 291 62.5
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 1.0e-97 361.3 400 50.0
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.9e-97 359.8 331 56.2
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.1e-95 353.6 286 61.9
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 4.7e-95 352.4 305 59.7
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 1.0e-94 351.3 313 58.8
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 4.8e-92 342.4 306 59.5
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.6e-90 337.4 316 58.5
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.0e-89 334.7 418 46.4
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.5e-89 332.0 313 56.2
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 6.5e-89 332.0 290 58.3
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 3.2e-88 329.7 432 45.4
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 4.2e-88 329.3 435 44.4
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 2.7e-87 326.6 435 46.9
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.7e-87 326.6 302 55.6
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.0e-86 322.8 340 54.4
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 7.5e-85 318.5 305 55.7
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 1.8e-83 313.9 420 42.6
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 2.2e-81 307.0 321 51.1
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 2.1e-79 300.4 563 37.7
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 1.2e-77 294.7 306 52.9
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 2.6e-77 293.5 285 55.1
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.2e-76 290.4 278 56.1
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 5.0e-73 279.3 410 42.0
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 5.2e-70 269.2 298 51.7
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 2.6e-69 266.9 458 36.9
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 6.1e-63 245.7 154 74.7
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 4.0e-62 243.0 314 43.6
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 3.4e-61 240.0 300 45.0
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.6e-58 231.1 314 43.3
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.7e-57 227.6 400 37.0
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 1.4e-54 218.0 302 43.4
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 4.0e-54 216.5 257 47.5
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 2.4e-51 207.2 265 41.1
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 3.5e-50 203.4 293 42.0
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.3e-46 190.7 234 46.2
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 1.2e-45 188.3 184 53.3
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 3.9e-41 173.3 365 33.2
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 1.1e-35 155.2 99 71.7
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 7.1e-35 152.5 100 71.0
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 7.8e-34 149.1 286 33.9
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 1.1e-27 128.6 85 72.9
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 3.2e-27 127.1 84 69.0
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 2.3e-25 120.9 79 77.2
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 1.1e-19 102.1 65 78.5
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 5.1e-17 93.2 67 61.2
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.5e-16 91.7 111 43.2
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 8.1e-15 85.9 220 33.6
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.8e-13 79.7 87 50.6
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 9.9e-13 79.0 248 30.6
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.8e-12 77.0 61 54.1
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 1.1e-11 75.5 57 70.2
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.4e-11 75.1 86 44.2
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.2e-11 73.6 67 55.2
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 8.7e-09 65.9 72 45.8
FvH4_3g06910 Fragaria vesca HOM05D027109 ORTHO05D019758 9.0e-06 55.8 41 65.9


User provided reference genes

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