Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 4.7e-41 170.6 78 100.0
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.0e-31 138.7 67 92.5
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 7.5e-31 136.7 72 87.5
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 2.8e-30 134.8 66 92.4
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.8e-30 134.8 66 92.4
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 2.8e-30 134.8 66 92.4
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 4.1e-29 131.0 66 89.4
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 7.0e-29 130.2 66 87.9
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 7.0e-29 130.2 66 87.9
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.6e-28 129.0 66 87.9
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 1.6e-28 129.0 66 87.9
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.6e-28 129.0 66 89.4
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 2.0e-28 128.6 66 86.4
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.0e-28 128.6 66 87.9
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 5.9e-28 127.1 66 86.4
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 7.7e-28 126.7 66 87.9
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.2e-27 125.2 66 86.4
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.2e-27 125.2 66 86.4
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 2.2e-27 125.2 65 86.2
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 3.8e-27 124.4 66 86.4
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 3.8e-27 124.4 66 86.4
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 3.8e-27 124.4 66 86.4
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.8e-27 124.4 66 86.4
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 5.0e-27 124.0 66 83.3
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 6.5e-27 123.6 64 87.5
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 6.5e-27 123.6 65 86.2
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 8.5e-27 123.2 65 84.6
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 1.1e-26 122.9 64 85.9
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 1.9e-26 122.1 64 85.9
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.5e-26 121.7 66 83.3
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.5e-26 121.7 66 83.3
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 2.5e-26 121.7 65 84.6
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 2.5e-26 121.7 67 82.1
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 3.2e-26 121.3 65 86.2
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 3.2e-26 121.3 66 83.3
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 4.2e-26 120.9 66 83.3
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 4.2e-26 120.9 66 83.3
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 4.2e-26 120.9 66 81.8
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 5.5e-26 120.6 65 83.1
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 7.2e-26 120.2 66 81.8
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 7.2e-26 120.2 66 81.8
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 7.2e-26 120.2 65 84.6
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 7.2e-26 120.2 65 84.6
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 7.2e-26 120.2 66 81.8
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 9.4e-26 119.8 66 81.8
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 9.4e-26 119.8 65 84.6
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.6e-25 119.0 66 80.3
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.6e-25 119.0 66 80.3
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 2.1e-25 118.6 66 77.3
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.7e-25 118.2 66 78.8
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 2.7e-25 118.2 66 80.3
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 3.6e-25 117.9 66 80.3
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 4.7e-25 117.5 65 81.5
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 4.7e-25 117.5 66 80.3
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 6.1e-25 117.1 66 78.8
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 8.0e-25 116.7 65 81.5
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 8.0e-25 116.7 65 81.5
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 8.0e-25 116.7 65 81.5
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 8.0e-25 116.7 65 81.5
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 8.0e-25 116.7 65 81.5
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 8.0e-25 116.7 67 82.1
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 1.0e-24 116.3 65 81.5
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 1.4e-24 115.9 65 78.5
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 2.3e-24 115.2 65 80.0
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 2.3e-24 115.2 65 81.5
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 2.3e-24 115.2 65 81.5
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 2.3e-24 115.2 64 79.7
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 4.0e-24 114.4 67 80.6
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.2e-24 114.0 64 81.2
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.2e-24 114.0 65 78.5
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 6.8e-24 113.6 65 75.4
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 6.8e-24 113.6 65 78.5
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 6.8e-24 113.6 65 78.5
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 8.8e-24 113.2 65 80.0
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 8.8e-24 113.2 66 80.3
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.2e-23 112.8 66 77.3
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.2e-23 112.8 65 76.9
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.5e-23 112.5 65 80.0
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.0e-23 112.1 65 78.5
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.0e-23 112.1 66 80.3
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 2.6e-23 111.7 65 76.9
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 2.6e-23 111.7 65 76.9
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 2.6e-23 111.7 65 76.9
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 2.6e-23 111.7 64 79.7
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 2.6e-23 111.7 66 74.2
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 3.4e-23 111.3 66 74.2
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 4.4e-23 110.9 65 78.5
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 4.4e-23 110.9 65 76.9
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 4.4e-23 110.9 65 76.9
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 5.7e-23 110.5 65 78.5
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 7.5e-23 110.2 66 75.8
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 9.8e-23 109.8 65 76.9
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.3e-22 109.4 65 76.9
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 1.3e-22 109.4 65 76.9
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.3e-22 109.4 65 76.9
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.3e-22 109.4 65 76.9
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.3e-22 109.4 65 76.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.3e-22 109.4 65 76.9
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.7e-22 109.0 66 74.2
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 2.2e-22 108.6 65 75.4
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 2.2e-22 108.6 65 75.4
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 2.2e-22 108.6 80 67.5
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.8e-22 108.2 65 75.4
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 2.8e-22 108.2 65 76.9
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 3.7e-22 107.8 66 74.2
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 3.7e-22 107.8 65 75.4
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 4.9e-22 107.5 65 73.8
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 4.9e-22 107.5 65 75.4
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 7.0e-21 103.6 66 74.2
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 7.7e-20 100.1 65 64.6
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 7.7e-20 100.1 65 67.7
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 7.7e-20 100.1 66 66.7
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 1.0e-19 99.8 66 66.7
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 2.3e-19 98.6 66 66.7
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.9e-18 95.5 48 89.6
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 2.8e-17 91.7 86 55.8
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 3.6e-17 91.3 53 83.0
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 4.7e-17 90.9 66 60.6
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.3e-16 88.6 52 76.9
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 4.0e-16 87.8 48 83.3
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 6.8e-16 87.0 50 80.0
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 1.5e-15 85.9 48 83.3
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.0e-15 85.5 48 79.2
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.0e-15 85.5 48 79.2
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 2.6e-15 85.1 59 67.8
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 2.6e-15 85.1 48 81.2
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.4e-15 84.7 48 81.2
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 5.7e-15 84.0 47 83.0
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 5.7e-15 84.0 47 83.0
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.3e-14 82.8 80 56.2
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.2e-14 82.0 47 80.9
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 8.3e-14 80.1 47 78.7
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 1.1e-13 79.7 52 71.2
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 2.4e-13 78.6 52 71.2
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 2.4e-13 78.6 52 71.2
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.0e-11 73.2 47 74.5
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.0e-11 73.2 48 70.8
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 4.3e-10 67.8 37 83.8
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 3.6e-09 64.7 49 55.1
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 9.8e-07 56.6 39 69.2


User provided reference genes

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