Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 3.9e-265 917.9 588 100.0
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 9.5e-179 630.9 521 85.0
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.0e-178 627.9 519 84.6
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-177 627.5 520 85.2
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.3e-177 626.3 521 84.5
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.1e-129 466.5 518 68.0
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 8.2e-98 362.1 479 48.6
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 3.4e-83 313.5 608 38.5
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 2.0e-80 304.3 479 42.4
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 2.9e-74 283.9 606 36.6
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 1.1e-73 282.0 614 34.9
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 5.4e-73 279.6 603 35.2
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.6e-67 260.8 541 36.2
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 4.4e-67 260.0 619 35.1
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.4e-67 260.0 619 35.1
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.9e-66 257.3 619 34.9
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.3e-66 255.8 619 34.6
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.9e-65 254.6 608 34.0
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.9e-65 254.6 564 35.1
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 3.2e-65 253.8 582 34.5
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 9.2e-65 252.3 604 33.4
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.2e-64 251.9 608 33.4
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.2e-64 251.9 600 35.2
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 3.5e-64 250.4 627 33.7
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 6.6e-63 246.1 265 53.6
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 8.6e-63 245.7 591 33.2
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.3e-62 243.8 460 39.1
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 3.3e-62 243.8 570 33.9
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 5.6e-62 243.0 613 33.6
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 7.3e-62 242.7 567 33.3
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 1.6e-61 241.5 273 50.9
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 4.7e-61 240.0 596 32.9
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 6.2e-61 239.6 567 33.3
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.2e-59 235.3 567 34.0
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 4.4e-59 233.4 265 50.2
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 9.8e-59 232.3 266 49.2
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.3e-58 231.9 595 32.9
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 1.3e-58 231.9 572 32.3
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 1.3e-58 231.9 622 31.7
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.7e-58 231.5 263 50.6
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 2.9e-58 230.7 278 49.6
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 2.9e-58 230.7 588 32.1
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 3.7e-58 230.3 612 32.5
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.1e-57 228.8 599 31.7
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.9e-57 228.0 611 31.6
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.9e-57 228.0 704 30.1
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 9.2e-57 225.7 589 31.9
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 1.2e-56 225.3 277 48.0
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.7e-56 224.2 266 48.5
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 2.7e-56 224.2 267 47.2
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 4.6e-56 223.4 578 34.3
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 7.8e-56 222.6 261 52.9
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.3e-55 221.9 270 47.0
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 3.0e-55 220.7 564 35.5
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 3.0e-55 220.7 585 32.3
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 6.6e-55 219.5 565 32.6
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.5e-54 218.4 266 46.6
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.9e-54 218.0 557 32.7
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 2.5e-54 217.6 271 48.3
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 2.5e-54 217.6 557 32.7
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 3.3e-54 217.2 259 49.0
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.2e-53 215.3 265 47.9
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.2e-53 215.3 267 47.6
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.2e-53 215.3 257 49.0
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 3.6e-53 213.8 540 33.3
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 3.6e-53 213.8 266 46.2
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 3.6e-53 213.8 266 46.2
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.0e-52 210.3 596 32.6
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 4.0e-52 210.3 266 45.1
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 6.8e-52 209.5 255 49.4
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 6.8e-52 209.5 582 31.3
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.4e-51 206.8 445 36.6
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 5.8e-51 206.5 588 34.7
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 5.8e-51 206.5 592 30.2
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.3e-50 205.3 574 30.8
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 6.4e-50 203.0 266 46.2
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 8.4e-50 202.6 258 48.4
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 8.4e-50 202.6 269 44.2
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.4e-49 201.8 270 45.6
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 2.3e-47 194.5 554 29.8
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 8.6e-47 192.6 225 49.3
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 1.9e-46 191.4 265 43.0
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 2.5e-46 191.0 265 43.0
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 2.5e-46 191.0 265 43.0
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 4.3e-46 190.3 265 42.6
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 5.6e-46 189.9 265 42.6
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 5.6e-46 189.9 269 43.5
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.8e-45 187.6 271 43.5
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.6e-45 187.2 263 43.0
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 8.1e-45 186.0 266 42.9
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.1e-44 185.7 278 41.7
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.1e-44 185.7 265 42.3
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 2.4e-44 184.5 266 42.5
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 3.1e-44 184.1 264 41.3
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 4.0e-44 183.7 265 41.5
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 5.2e-44 183.3 259 43.2
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 6.8e-44 183.0 268 41.4
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 1.5e-43 181.8 260 42.3
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 1.5e-43 181.8 260 42.3
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 1.5e-43 181.8 260 42.3
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 2.6e-43 181.0 266 42.1
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 3.4e-43 180.6 258 43.8
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 5.8e-43 179.9 265 40.8
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 9.9e-43 179.1 258 42.6
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 1.3e-42 178.7 263 42.6
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 2.2e-42 177.9 266 41.7
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.1e-41 175.6 537 29.4
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 1.1e-41 175.6 544 31.6
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.6e-40 171.8 541 27.9
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 3.5e-40 170.6 249 40.6
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-37 162.2 498 31.7
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 3.1e-36 157.5 160 55.6
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 3.1e-36 157.5 654 27.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 9.0e-36 156.0 262 40.1
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.2e-33 147.5 191 46.1
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 9.3e-33 146.0 353 33.7
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 3.5e-32 144.1 268 37.7
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 7.9e-32 142.9 542 29.9
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.7e-31 141.7 267 35.2
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 4.3e-30 137.1 261 36.8
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 6.2e-29 133.3 589 26.0
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.5e-27 128.6 255 36.1
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 5.8e-27 126.7 151 49.7
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 2.2e-26 124.8 255 32.2
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 4.9e-26 123.6 212 41.0
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 4.2e-25 120.6 394 29.2
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 5.5e-25 120.2 150 48.7
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 1.3e-23 115.5 98 54.1
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.6e-21 108.6 154 44.8
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.9e-18 97.8 121 45.5
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.2e-17 94.4 434 26.7
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 5.5e-17 93.6 166 38.0
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 3.5e-16 90.9 157 37.6
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 8.7e-15 86.3 112 46.4
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 2.5e-14 84.7 102 48.0
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 5.7e-14 83.6 124 38.7
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 5.3e-12 77.0 109 45.0
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 5.3e-12 77.0 140 36.4
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 2.0e-11 75.1 61 63.9
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 3.8e-10 70.9 271 27.3
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 8.4e-10 69.7 164 32.3
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 3.2e-09 67.8 204 26.5
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 4.2e-09 67.4 69 59.4
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 5.5e-09 67.0 95 46.3
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 1.2e-08 65.9 192 31.2


User provided reference genes

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