Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 5.5e-153 544.3 275 100.0
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 2.6e-118 429.1 262 85.9
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 5.7e-118 427.9 262 85.5
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 3.8e-114 415.2 257 84.4
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.7e-106 389.8 253 82.2
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 5.7e-102 374.8 259 77.6
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 2.4e-100 369.4 253 77.5
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 5.4e-100 368.2 252 75.4
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 5.4e-100 368.2 252 75.4
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 2.0e-99 366.3 252 75.4
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 1.3e-98 363.6 242 76.4
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 5.0e-98 361.7 246 75.2
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 1.1e-97 360.5 234 76.9
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 5.6e-97 358.2 252 72.6
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 9.5e-97 357.5 231 79.2
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 1.2e-96 357.1 252 72.2
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 2.1e-96 356.3 243 74.9
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 6.1e-96 354.8 270 73.7
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 3.1e-95 352.4 222 80.6
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 5.2e-95 351.7 226 78.3
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 9.8e-94 347.4 237 74.3
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 2.2e-93 346.3 242 72.3
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 2.9e-93 345.9 242 73.6
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 4.9e-93 345.1 245 71.0
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 8.3e-93 344.4 196 85.7
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 1.1e-92 344.0 225 76.0
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 1.9e-92 343.2 223 76.7
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 1.9e-92 343.2 207 82.1
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 3.2e-92 342.4 197 83.2
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 3.2e-92 342.4 252 71.0
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 9.2e-92 340.9 203 79.8
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 9.2e-92 340.9 225 75.1
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 1.2e-91 340.5 242 71.1
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 1.6e-91 340.1 242 70.7
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 1.6e-91 340.1 210 79.0
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 2.7e-91 339.3 246 71.1
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 2.7e-91 339.3 197 82.7
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 2.7e-91 339.3 205 80.0
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 3.5e-91 339.0 225 75.1
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 3.5e-91 339.0 198 83.3
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 4.6e-91 338.6 207 78.7
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 7.8e-91 337.8 197 81.7
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.3e-90 337.0 219 78.5
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 1.7e-90 336.7 252 68.7
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 1.7e-90 336.7 253 69.6
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 1.7e-90 336.7 197 82.7
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 5.0e-90 335.1 209 78.5
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 5.0e-90 335.1 251 70.1
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 8.6e-90 334.3 229 75.1
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 1.1e-89 334.0 197 81.2
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 1.5e-89 333.6 197 81.2
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 1.9e-89 333.2 252 70.2
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 1.9e-89 333.2 247 67.6
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 3.3e-89 332.4 196 81.1
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 4.3e-89 332.0 231 74.5
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 4.3e-89 332.0 251 68.9
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 5.6e-89 331.6 214 73.8
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 5.6e-89 331.6 223 74.4
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 7.3e-89 331.3 248 68.1
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 9.5e-89 330.9 208 75.0
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 1.2e-88 330.5 223 75.3
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 2.8e-88 329.3 239 69.0
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 3.6e-88 328.9 213 75.1
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 6.2e-88 328.2 196 80.1
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 2.3e-87 326.2 264 65.2
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 4.4e-86 322.0 237 68.8
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 9.8e-86 320.9 232 72.4
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 1.7e-85 320.1 220 74.1
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 2.2e-85 319.7 206 77.7
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 4.9e-85 318.5 205 75.1
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 6.4e-85 318.2 207 76.3
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 1.1e-84 317.4 216 74.1
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 1.1e-84 317.4 205 74.6
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 2.4e-84 316.2 228 71.5
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 3.2e-84 315.8 206 76.2
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 3.2e-84 315.8 206 76.2
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 4.1e-84 315.5 191 84.3
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 9.2e-84 314.3 196 76.0
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 1.2e-83 313.9 196 74.5
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 3.5e-83 312.4 229 69.0
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 4.6e-83 312.0 206 75.2
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 6.0e-83 311.6 233 70.8
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 6.0e-83 311.6 206 75.2
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 5.1e-82 308.5 226 68.1
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 8.6e-82 307.8 219 71.7
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 2.3e-79 299.7 197 75.6
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 7.6e-78 294.7 195 72.3
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 7.8e-75 284.6 201 68.7
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 1.7e-74 283.5 194 68.0
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 8.6e-74 281.2 191 69.1
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 6.0e-67 258.5 222 59.0
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 7.3e-65 251.5 200 66.0
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 4.2e-60 235.7 158 76.6
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 1.2e-59 234.2 244 56.1
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.3e-58 230.7 157 80.9
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 8.7e-58 228.0 133 84.2
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 3.6e-56 222.6 244 54.9
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.2e-51 207.6 159 65.4
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 7.9e-51 204.9 190 54.2
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 2.3e-50 203.4 167 65.3
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.1e-48 196.8 251 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 1.1e-47 194.5 195 51.8
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.7e-45 187.2 131 69.5
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 6.7e-42 175.3 125 72.8
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 3.7e-40 169.5 203 44.3
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 3.4e-38 162.9 135 68.1
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 2.9e-37 159.8 112 70.5
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 1.1e-36 157.9 95 77.9
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.1e-33 147.9 98 70.4
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 3.3e-33 146.4 211 39.3
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 4.3e-33 146.0 122 59.8
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 6.3e-32 142.1 136 49.3
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 5.9e-30 135.6 116 63.8
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 8.5e-29 131.7 204 38.2
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 1.4e-20 104.4 69 65.2
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 4.2e-20 102.8 87 57.5
Hma1.2p1_0119F.1_g056580 Hydrangea macrophylla HOM05D006387 ORTHO05D008533 5.7e-17 92.4 52 78.8
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 2.6e-14 83.6 51 76.5
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 2.2e-13 80.5 65 56.9
vmacro18230 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 2.5e-12 77.0 60 61.7
vmacro18321 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 5.5e-12 75.9 55 61.8
vmacro18566 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 2.1e-11 73.9 51 66.7
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 5.2e-10 69.3 82 48.8
Actinidia06523 Actinidia chinensis HOM05D009440 ORTHO05D011919 1.4e-07 61.2 43 72.1
Ah.03g140070 Amaranthus hybridus HOM05D006387 ORTHO05D008533 9.1e-07 58.5 41 68.3


User provided reference genes

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