Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 4.1e-66 254.6 130 100.0
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 9.5e-39 163.7 135 68.1
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 3.1e-37 158.7 135 66.7
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 8.9e-37 157.1 133 66.9
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 8.9e-37 157.1 133 66.9
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 9.8e-36 153.7 133 65.4
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 1.4e-34 149.8 137 62.0
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 3.5e-33 145.2 135 60.7
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 7.8e-33 144.1 130 63.1
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 1.0e-32 143.7 137 58.4
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 2.3e-32 142.5 136 61.8
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 2.3e-32 142.5 136 61.8
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 3.0e-32 142.1 120 62.5
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 3.0e-32 142.1 135 60.0
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 1.1e-31 140.2 135 58.5
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 1.9e-31 139.4 135 57.8
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 1.9e-31 139.4 135 57.8
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 3.3e-31 138.7 143 57.3
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 4.3e-31 138.3 136 57.4
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 4.3e-31 138.3 136 57.4
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 4.3e-31 138.3 135 57.0
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 4.3e-31 138.3 135 59.3
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 4.3e-31 138.3 137 58.4
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 4.3e-31 138.3 139 58.3
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 7.3e-31 137.5 131 59.5
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 9.5e-31 137.1 135 60.0
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 1.2e-30 136.7 138 55.8
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 1.2e-30 136.7 135 58.5
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 1.6e-30 136.3 135 56.3
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 1.6e-30 136.3 129 58.9
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 2.1e-30 136.0 130 58.5
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 2.1e-30 136.0 135 57.0
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 2.8e-30 135.6 135 59.3
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.8e-30 135.6 139 57.6
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 2.8e-30 135.6 136 55.9
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 2.8e-30 135.6 129 58.9
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 6.2e-30 134.4 134 59.7
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 6.2e-30 134.4 127 59.8
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 6.2e-30 134.4 130 59.2
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 8.1e-30 134.0 127 61.4
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 1.4e-29 133.3 135 54.8
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 1.8e-29 132.9 134 56.7
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.8e-29 132.9 139 56.8
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 1.8e-29 132.9 135 55.6
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 2.3e-29 132.5 135 55.6
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 2.3e-29 132.5 135 54.1
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 3.1e-29 132.1 132 55.3
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 4.0e-29 131.7 129 57.4
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 6.8e-29 131.0 134 54.5
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 6.8e-29 131.0 135 55.6
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 6.8e-29 131.0 137 55.5
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 8.9e-29 130.6 135 57.0
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 8.9e-29 130.6 135 52.6
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 8.9e-29 130.6 131 58.0
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 8.9e-29 130.6 141 55.3
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 8.9e-29 130.6 129 57.4
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 1.2e-28 130.2 146 54.1
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 1.5e-28 129.8 133 55.6
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 2.6e-28 129.0 129 55.8
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 3.4e-28 128.6 128 57.0
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 3.4e-28 128.6 130 53.8
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 3.4e-28 128.6 129 55.8
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 4.4e-28 128.3 127 59.1
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 5.8e-28 127.9 135 52.6
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 7.5e-28 127.5 140 52.9
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 1.3e-27 126.7 138 53.6
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 1.3e-27 126.7 137 55.5
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 3.7e-27 125.2 135 52.6
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 3.7e-27 125.2 129 55.0
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 8.3e-27 124.0 137 51.1
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 8.3e-27 124.0 129 54.3
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 1.1e-26 123.6 127 55.1
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.1e-26 123.6 97 71.1
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 3.2e-26 122.1 143 54.5
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 3.2e-26 122.1 127 52.0
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 5.4e-26 121.3 137 51.8
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 7.1e-26 120.9 135 52.6
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 7.1e-26 120.9 135 50.4
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 7.1e-26 120.9 135 50.4
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 1.2e-25 120.2 128 54.7
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 1.2e-25 120.2 107 59.8
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 1.6e-25 119.8 138 54.3
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 1.6e-25 119.8 135 54.1
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 2.1e-25 119.4 104 57.7
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 2.7e-25 119.0 136 52.2
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 3.5e-25 118.6 136 52.9
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 3.5e-25 118.6 136 52.9
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 3.5e-25 118.6 135 53.3
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 4.6e-25 118.2 136 52.2
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 1.0e-24 117.1 127 55.1
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 1.7e-24 116.3 137 50.4
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 1.7e-24 116.3 136 52.2
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 2.3e-24 115.9 136 51.5
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.3e-24 115.9 104 56.7
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 3.0e-24 115.5 138 51.4
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 5.1e-24 114.8 136 51.5
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 7.3e-23 110.9 128 47.7
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 1.2e-22 110.2 135 48.1
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 1.2e-22 110.2 147 46.9
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 1.6e-22 109.8 126 50.8
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 1.2e-20 103.6 135 50.4
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 4.9e-19 98.2 134 44.0
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 7.1e-18 94.4 135 40.0
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.6e-17 93.2 127 44.1
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 5.1e-16 88.2 127 38.6
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 1.9e-15 86.3 99 51.5
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.8e-13 79.7 75 49.3
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.5e-12 76.6 75 46.7
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 4.9e-11 71.6 134 33.6
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 5.4e-10 68.2 95 43.2
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 1.7e-08 63.2 86 41.9
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 1.5e-07 60.1 49 57.1


User provided reference genes

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