Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 3.5e-86 321.6 166 100.0
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 3.7e-72 275.0 165 83.6
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.7e-72 275.0 165 83.6
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.7e-72 275.0 165 83.6
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.2e-71 270.4 165 82.4
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.2e-67 260.0 179 76.0
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.2e-64 249.2 166 78.9
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.3e-61 239.2 166 75.9
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 2.9e-56 222.2 166 68.7
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.8e-56 221.9 166 70.5
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-55 219.9 166 68.1
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-55 219.9 166 68.1
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.7e-53 213.0 164 66.5
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.0e-53 212.2 164 67.1
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.0e-53 212.2 166 67.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 3.9e-53 211.8 165 67.9
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.9e-53 211.8 166 67.5
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 8.7e-53 210.7 166 66.9
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.1e-52 210.3 166 65.1
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.1e-52 210.3 166 68.1
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.5e-52 209.9 166 67.5
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.5e-52 209.9 165 67.3
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.9e-52 209.5 164 65.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.5e-52 209.1 166 65.7
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.5e-52 209.1 160 68.8
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 5.6e-52 208.0 161 67.7
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 7.3e-52 207.6 165 65.5
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 7.3e-52 207.6 163 66.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 9.6e-52 207.2 164 65.2
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 9.6e-52 207.2 166 66.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.3e-51 206.8 161 67.7
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.3e-51 206.8 161 67.1
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.3e-51 206.8 166 64.5
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-51 206.8 161 67.1
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-51 206.8 166 66.9
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.3e-51 206.8 159 67.9
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.6e-51 206.5 166 66.3
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.6e-51 206.5 161 67.1
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.1e-51 206.1 166 63.3
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.8e-51 205.7 161 66.5
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.8e-51 205.7 166 65.7
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 3.6e-51 205.3 163 65.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.6e-51 205.3 161 67.7
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.6e-51 205.3 167 64.7
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 6.2e-51 204.5 163 65.0
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 6.2e-51 204.5 166 65.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.2e-51 204.5 166 65.1
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 6.2e-51 204.5 166 62.7
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 6.2e-51 204.5 166 65.1
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.1e-50 203.8 162 64.2
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.1e-50 203.8 166 65.1
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.1e-50 203.8 166 66.3
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.4e-50 203.4 166 65.1
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.4e-50 203.4 166 66.3
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.8e-50 203.0 161 65.8
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.8e-50 203.0 166 65.7
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.8e-50 203.0 166 65.1
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.8e-50 203.0 166 66.3
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.8e-50 203.0 166 63.9
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.4e-50 202.6 161 65.2
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 2.4e-50 202.6 161 65.2
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 3.1e-50 202.2 166 65.1
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 3.1e-50 202.2 166 65.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.1e-50 202.2 168 64.9
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 3.1e-50 202.2 166 64.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.0e-50 201.8 165 65.5
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.0e-50 201.8 166 65.7
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 6.9e-50 201.1 161 66.5
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 6.9e-50 201.1 165 65.5
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 6.9e-50 201.1 165 65.5
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 9.0e-50 200.7 166 66.3
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 9.0e-50 200.7 165 63.6
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 9.0e-50 200.7 166 64.5
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 9.0e-50 200.7 166 64.5
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 9.0e-50 200.7 161 65.8
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.2e-49 200.3 159 66.0
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.5e-49 199.9 164 63.4
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.0e-49 199.5 164 64.0
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-49 199.5 165 64.2
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.6e-49 199.1 166 63.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 5.8e-49 198.0 166 63.9
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 5.8e-49 198.0 161 64.0
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 7.6e-49 197.6 161 64.0
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 7.6e-49 197.6 161 64.0
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 9.9e-49 197.2 166 61.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 9.9e-49 197.2 161 64.0
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.3e-48 196.8 166 63.3
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.3e-48 196.8 161 63.4
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.7e-48 196.4 162 62.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.7e-48 196.4 161 64.6
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.7e-48 196.4 161 64.6
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.2e-48 196.1 144 70.1
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.9e-48 195.7 166 62.0
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 3.8e-48 195.3 166 62.0
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.8e-48 195.3 166 62.0
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.9e-48 194.9 166 61.4
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 4.9e-48 194.9 166 63.3
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.4e-48 194.5 166 62.7
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.4e-48 194.5 166 61.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 6.4e-48 194.5 161 62.7
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 6.4e-48 194.5 166 62.0
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 6.4e-48 194.5 166 62.0
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.1e-47 193.7 158 64.6
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.1e-47 193.7 166 62.0
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.4e-47 193.4 166 60.8
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.9e-47 193.0 166 62.7
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.9e-47 193.0 166 62.7
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.4e-47 192.6 166 62.0
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 4.2e-47 191.8 166 61.4
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 5.4e-47 191.4 161 62.7
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 5.4e-47 191.4 166 62.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 7.1e-47 191.0 161 61.5
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 9.3e-47 190.7 166 60.8
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 9.3e-47 190.7 166 61.4
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 3.5e-46 188.7 166 60.8
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 6.0e-46 188.0 166 61.4
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.0e-45 187.2 163 60.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.3e-45 186.0 166 57.2
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 3.9e-45 185.3 163 60.7
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 5.1e-45 184.9 166 59.6
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 6.6e-45 184.5 164 57.3
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 8.7e-45 184.1 166 60.8
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.9e-44 183.0 164 57.3
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.5e-44 182.6 164 58.5
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.3e-44 182.2 162 60.5
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 5.6e-44 181.4 164 57.3
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 7.3e-44 181.0 164 57.3
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.6e-43 179.9 164 57.9
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 2.8e-43 179.1 164 56.7
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.4e-42 176.8 165 59.4
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.8e-42 176.4 164 58.5
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.1e-42 175.6 161 58.4
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 3.1e-42 175.6 163 57.7
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 5.3e-42 174.9 161 56.5
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.5e-41 173.3 166 53.6
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 2.0e-41 172.9 164 54.9
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.5e-41 171.8 164 56.7
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.5e-41 171.8 159 56.0
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.7e-40 169.9 164 53.7
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 6.4e-40 167.9 161 52.2
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.9e-39 166.4 134 65.7
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.4e-39 166.0 161 57.8
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-38 163.7 119 68.1
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.5e-38 162.2 168 55.4
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.3e-37 160.2 129 63.6
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.3e-37 160.2 117 70.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.3e-37 159.5 117 68.4
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 5.1e-37 158.3 163 52.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.3e-36 155.6 142 54.2
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.1e-35 152.9 164 51.8
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.8e-34 149.8 146 50.7
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 6.9e-34 147.9 165 53.9
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.2e-33 147.1 122 61.5
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.4e-33 145.6 116 63.8
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.4e-33 145.6 131 58.8
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.6e-30 136.7 117 59.0
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.3e-29 133.7 166 50.6
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.3e-27 127.1 166 50.0
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.8e-27 125.9 143 51.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.7e-27 125.6 160 43.8
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.1e-26 124.0 96 65.6
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.4e-26 123.6 109 60.6
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.2e-25 120.6 166 46.4
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.4e-25 119.0 166 45.8
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.4e-25 119.0 166 45.8
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.0e-24 117.5 85 69.4
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.1e-23 114.0 94 64.9
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.8e-19 99.4 97 54.6
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 5.3e-18 95.1 99 51.5
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-17 94.0 71 63.4
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.9e-16 89.4 162 37.7
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.8e-13 77.8 84 50.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-08 64.3 69 47.8
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.2e-08 63.2 41 75.6
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.8e-08 62.4 107 35.5
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-07 60.1 48 60.4
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 5.5e-07 58.5 175 29.1


User provided reference genes

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