Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 0.0e+00 1276.5 663 100.0
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 0.0e+00 1155.6 660 90.9
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 0.0e+00 1130.9 661 89.4
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 0.0e+00 1120.5 660 88.8
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 0.0e+00 1092.0 630 90.5
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 6.7e-298 1026.9 665 80.8
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 9.1e-295 1016.5 669 80.6
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 2.2e-293 1011.9 657 80.2
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 4.2e-276 954.5 666 74.9
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 1.5e-273 946.0 665 73.8
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 3.1e-271 938.3 665 73.5
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 7.0e-271 937.2 655 74.0
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 2.7e-262 908.7 666 72.7
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 3.3e-252 875.2 673 68.5
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 7.3e-252 874.0 651 69.9
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 2.0e-249 865.9 660 69.5
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 3.4e-249 865.1 664 68.8
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 9.8e-249 863.6 665 68.3
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 8.3e-248 860.5 661 68.7
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 2.7e-246 855.5 657 68.3
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 4.6e-246 854.7 655 69.5
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.7e-245 852.8 660 68.5
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 3.9e-245 851.7 660 67.6
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 5.0e-245 851.3 655 67.2
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 2.5e-244 849.0 669 67.3
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 4.3e-244 848.2 665 66.3
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 3.6e-243 845.1 670 67.5
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 3.6e-243 845.1 667 66.3
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 3.1e-242 842.0 645 68.4
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 1.3e-240 836.6 671 66.6
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 3.2e-239 832.0 664 66.1
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 3.2e-239 832.0 667 66.9
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 4.1e-239 831.6 666 66.5
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 4.6e-238 828.2 671 66.0
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 6.0e-238 827.8 662 66.6
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 6.0e-238 827.8 662 66.6
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 3.0e-237 825.5 661 65.1
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.2e-235 820.1 665 66.3
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 8.9e-234 813.9 651 65.9
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 7.6e-233 810.8 655 64.0
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 7.6e-233 810.8 675 64.9
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 8.4e-232 807.4 661 63.7
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.1e-231 807.0 662 63.4
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.6e-230 803.1 641 66.9
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 2.3e-229 799.3 663 66.5
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 3.0e-229 798.9 668 64.7
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 3.3e-228 795.4 660 66.1
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 6.2e-227 791.2 662 65.6
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 8.1e-227 790.8 667 63.9
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 1.4e-226 790.0 648 64.7
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 5.2e-226 788.1 666 65.5
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 7.6e-225 784.3 658 62.0
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 4.2e-223 778.5 651 63.3
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 7.1e-223 777.7 670 62.8
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 3.3e-220 768.8 652 63.2
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 7.3e-220 767.7 708 61.3
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.4e-218 763.5 650 61.8
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 2.4e-218 762.7 653 62.6
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 4.0e-218 761.9 665 60.5
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 9.0e-218 760.8 683 61.9
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.2e-217 760.4 657 62.6
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 2.0e-217 759.6 654 60.9
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.7e-216 756.5 654 61.5
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.7e-216 756.5 663 62.1
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 2.9e-216 755.7 682 60.3
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.1e-215 753.8 651 61.8
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 4.2e-215 751.9 668 61.1
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 5.4e-215 751.5 658 61.1
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 3.0e-213 745.7 656 61.0
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 1.5e-212 743.4 660 61.1
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 4.3e-212 741.9 667 62.2
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 1.1e-210 737.3 654 61.6
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 4.0e-210 735.3 654 58.6
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 9.0e-210 734.2 667 59.1
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 7.6e-209 731.1 667 58.9
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 7.6e-209 731.1 536 70.3
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.3e-208 730.3 618 63.3
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.4e-207 726.9 655 59.8
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 1.9e-207 726.5 536 71.8
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 4.2e-207 725.3 667 58.6
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 5.5e-199 698.4 662 58.6
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 6.0e-198 694.9 658 57.0
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.0e-197 694.1 598 63.0
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.9e-197 692.2 575 65.4
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.5e-196 690.3 493 71.0
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.0e-193 679.9 684 55.4
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 6.7e-189 664.8 656 57.5
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 2.3e-181 639.8 698 52.7
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 4.4e-180 635.6 490 65.9
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.2e-177 627.5 666 53.6
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 7.2e-175 618.2 665 52.2
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.6e-174 615.9 498 62.4
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 9.1e-170 601.3 541 62.1
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 4.8e-163 578.9 701 47.6
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 6.3e-163 578.6 602 55.1
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 8.0e-158 561.6 489 63.6
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.8e-155 553.1 612 52.5
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 5.4e-138 495.7 446 63.0
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 7.8e-137 491.9 523 53.9
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.5e-135 487.6 648 44.0
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 4.4e-116 422.9 393 63.1
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.3e-115 421.4 749 37.7
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 7.3e-111 405.6 298 73.8
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 5.2e-109 399.4 297 66.7
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 6.9e-109 399.1 700 39.0
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.1e-105 387.5 346 64.5
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.5e-103 380.6 599 40.1
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 1.9e-98 364.4 298 67.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 3.3e-95 353.6 299 68.6
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 3.1e-93 347.1 337 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 8.4e-91 339.0 656 37.0
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.9e-83 313.9 431 50.8
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 2.1e-81 307.8 516 39.0
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.2e-73 282.0 331 49.8
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.2e-67 261.2 206 69.4
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 5.1e-64 250.0 181 70.7
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 4.4e-63 246.9 390 44.9
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 3.1e-61 240.7 380 42.6
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 1.4e-53 215.3 190 60.5
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.5e-50 204.5 155 65.8
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.7e-49 201.1 149 65.8
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.5e-39 168.7 121 62.8
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 1.4e-37 162.2 334 33.8
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 6.6e-35 153.3 680 29.0
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 7.5e-31 139.8 181 47.0
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.1e-18 99.4 134 44.0
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.5e-18 98.2 61 83.6
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 4.0e-16 90.9 169 42.6
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 1.5e-15 89.0 63 69.8
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 5.8e-15 87.0 99 45.5
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.7e-14 84.3 57 68.4
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 1.9e-13 82.0 63 65.1
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 4.1e-13 80.9 118 42.4
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 5.4e-13 80.5 99 47.5
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 6.0e-12 77.0 55 70.9
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 1.0e-11 76.3 118 41.5
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 1.3e-06 59.3 105 35.2
GSVIVG01036155001 Vitis vinifera HOM05D005709 ORTHO05D006306 4.9e-06 57.4 53 49.1


User provided reference genes

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