Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 3.2e-111 405.2 220 100.0
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 1.5e-97 359.8 216 90.7
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 2.1e-86 322.8 211 82.5
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 3.5e-86 322.0 212 81.6
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 1.2e-70 270.4 210 69.5
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 6.1e-70 268.1 213 69.5
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.8e-67 259.2 211 70.6
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 8.2e-67 257.7 211 69.7
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 5.0e-64 248.4 216 65.3
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 2.1e-62 243.0 210 63.3
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 2.7e-62 242.7 211 63.5
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.6e-62 242.3 211 65.9
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 3.9e-61 238.8 213 63.8
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 8.8e-61 237.7 211 63.0
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.0e-60 236.5 211 62.6
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 4.4e-60 235.3 194 68.6
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 7.4e-60 234.6 219 60.7
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 2.8e-59 232.6 211 61.6
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.8e-59 231.9 212 62.7
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 4.8e-59 231.9 208 62.5
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 4.8e-59 231.9 215 62.8
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 8.2e-59 231.1 210 61.4
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.1e-58 229.2 212 60.8
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 6.9e-58 228.0 211 61.1
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 6.9e-58 228.0 213 60.6
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 2.6e-57 226.1 211 59.7
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 5.9e-57 224.9 211 59.7
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 1.3e-56 223.8 210 60.0
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 6.5e-56 221.5 211 59.2
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 2.5e-55 219.5 212 56.6
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.2e-55 219.2 211 56.9
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 5.5e-55 218.4 212 59.9
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 2.7e-54 216.1 213 55.9
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 3.6e-54 215.7 211 55.5
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 7.9e-54 214.5 211 56.9
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 1.0e-53 214.2 214 57.0
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 3.0e-53 212.6 211 56.4
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 8.8e-53 211.1 213 56.8
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 3.3e-52 209.1 207 57.5
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 5.7e-52 208.4 213 55.9
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 5.7e-52 208.4 213 54.9
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 7.4e-52 208.0 202 57.4
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 2.2e-51 206.5 211 54.5
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 6.3e-51 204.9 213 53.5
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 1.4e-50 203.8 199 57.8
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 2.4e-50 203.0 211 55.5
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 5.3e-50 201.8 198 57.1
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 5.3e-50 201.8 211 54.0
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 1.2e-49 200.7 212 55.7
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 1.2e-49 200.7 202 55.0
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 2.0e-49 199.9 215 54.0
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 2.6e-49 199.5 212 53.8
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 2.6e-49 199.5 212 54.7
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 4.5e-49 198.7 205 55.1
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 5.9e-49 198.4 211 54.0
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 1.0e-48 197.6 211 52.1
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 1.3e-48 197.2 213 52.1
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 2.9e-48 196.1 199 57.3
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 5.0e-48 195.3 212 53.3
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 6.5e-48 194.9 207 52.7
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 8.5e-48 194.5 212 52.8
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.5e-47 193.7 212 53.8
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 2.5e-47 193.0 212 52.8
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 9.4e-47 191.0 212 51.4
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 1.6e-46 190.3 214 52.8
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 2.7e-46 189.5 195 55.4
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 6.1e-46 188.3 195 53.8
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 6.1e-46 188.3 195 53.8
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 6.1e-46 188.3 194 54.6
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 8.0e-46 188.0 214 53.3
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 8.0e-46 188.0 195 54.4
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 3.0e-45 186.0 213 51.2
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.0e-45 186.0 219 50.7
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 4.0e-45 185.7 193 53.9
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 4.0e-45 185.7 207 52.2
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 5.2e-45 185.3 195 53.8
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 5.2e-45 185.3 211 50.7
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 8.8e-45 184.5 216 47.7
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 8.8e-45 184.5 213 51.2
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 8.8e-45 184.5 213 48.4
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.2e-44 184.1 211 50.7
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 2.6e-44 183.0 214 51.9
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 3.3e-44 182.6 211 47.9
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 4.4e-44 182.2 211 47.9
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 4.4e-44 182.2 213 49.8
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 7.5e-44 181.4 215 50.2
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 7.5e-44 181.4 211 48.3
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 9.7e-44 181.0 212 48.6
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 1.7e-43 180.3 212 52.4
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.7e-43 180.3 213 51.2
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 1.7e-43 180.3 211 50.7
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 2.2e-43 179.9 216 48.6
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 2.2e-43 179.9 213 47.9
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 6.3e-43 178.3 212 48.6
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 3.1e-42 176.0 213 47.4
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 4.1e-42 175.6 213 47.4
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 2.7e-41 172.9 212 50.0
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 7.7e-41 171.4 174 55.2
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.7e-40 170.2 213 47.4
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.7e-40 170.2 213 47.4
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 2.9e-40 169.5 212 50.0
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.9e-40 169.5 212 49.5
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 2.9e-40 169.5 213 46.5
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 2.9e-40 169.5 213 49.3
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 5.0e-40 168.7 200 50.0
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 6.5e-40 168.3 212 49.1
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 8.5e-40 167.9 213 47.9
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 8.5e-40 167.9 196 51.5
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 2.5e-39 166.4 210 51.0
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 3.2e-39 166.0 211 46.9
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 3.2e-39 166.0 213 48.4
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 5.5e-39 165.2 211 45.0
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 5.5e-39 165.2 213 48.4
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 9.4e-39 164.5 217 45.2
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 6.1e-38 161.8 196 50.5
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 1.4e-37 160.6 216 46.8
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 1.8e-37 160.2 213 46.5
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 2.3e-37 159.8 200 46.5
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 3.0e-37 159.5 217 44.7
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 4.0e-37 159.1 211 43.6
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 8.8e-37 157.9 219 44.3
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.5e-36 157.1 205 46.3
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 2.2e-35 153.3 208 46.2
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 8.3e-35 151.4 220 43.6
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 1.1e-34 151.0 213 44.6
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 1.8e-34 150.2 220 44.1
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 2.4e-34 149.8 228 43.9
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 3.1e-34 149.4 213 43.7
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 2.7e-33 146.4 219 42.9
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 3.5e-33 146.0 163 53.4
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 4.5e-33 145.6 138 57.2
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 1.0e-32 144.4 143 58.0
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.0e-32 144.4 213 44.1
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.7e-32 143.7 202 45.0
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 2.9e-32 142.9 188 45.7
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.9e-32 142.9 209 44.0
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 6.5e-32 141.7 211 40.8
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 8.5e-32 141.4 211 41.7
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 6.1e-30 135.2 207 41.5
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.5e-28 130.6 216 41.2
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 2.6e-28 129.8 192 40.6
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 3.4e-28 129.4 208 42.3
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 2.8e-27 126.3 204 37.7
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.7e-24 117.1 117 56.4
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 5.0e-24 115.5 210 37.1
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 7.3e-23 111.7 219 37.0
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.6e-22 110.5 219 36.5
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 6.8e-21 105.1 118 49.2
FAN28G2101 Fragaria x ananassa HOM05D004648 ORTHO05D005782 1.5e-20 104.0 61 85.2
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.5e-20 104.0 137 46.0
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 1.7e-19 100.5 213 33.8
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.1e-18 97.8 136 43.4
BolC6t39019H Brassica oleracea HOM05D004648 ORTHO05D031748 8.6e-08 61.6 63 54.0


User provided reference genes

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