Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 0.0e+00 1080.5 586 100.0
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 5.8e-261 904.0 575 83.5
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.9e-260 901.7 575 83.3
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.2e-259 898.3 578 82.4
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.2e-259 898.3 585 82.2
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.6e-255 885.9 582 81.8
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 2.5e-235 818.9 581 78.0
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 2.9e-228 795.4 582 74.2
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 6.5e-228 794.3 578 73.7
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 2.3e-193 679.5 585 64.6
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.5e-192 676.8 579 63.7
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 2.7e-189 666.0 584 63.4
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 8.5e-188 661.0 576 62.3
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.7e-184 648.3 580 62.8
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 4.9e-183 645.2 574 61.0
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.1e-182 642.1 574 60.5
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.7e-181 639.4 574 60.6
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 4.7e-178 628.6 577 61.2
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 3.0e-177 625.9 577 60.8
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 4.9e-175 618.6 582 62.7
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 5.0e-172 608.6 651 54.5
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 6.6e-172 608.2 583 57.8
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.1e-171 607.4 585 59.3
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.9e-167 592.8 536 62.3
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 8.3e-167 591.3 586 58.0
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 6.0e-165 585.1 623 54.4
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.7e-162 575.5 579 57.7
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 8.9e-161 571.2 586 55.8
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.3e-159 567.4 579 57.2
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 8.3e-159 564.7 585 54.9
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 5.4e-158 562.0 585 55.9
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.5e-155 553.1 587 54.2
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 7.3e-155 551.6 585 59.1
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 7.3e-155 551.6 585 54.5
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 2.8e-154 549.7 587 54.0
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 8.1e-154 548.1 576 54.0
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 1.5e-152 543.9 477 63.7
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 3.4e-152 542.7 442 66.1
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.7e-151 540.4 678 48.1
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 4.9e-151 538.9 587 53.7
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 8.4e-151 538.1 587 53.0
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.4e-150 537.3 678 48.4
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 2.4e-150 536.6 596 57.0
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 4.1e-150 535.8 583 53.9
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 8.6e-148 528.1 492 57.3
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 2.5e-147 526.6 588 52.0
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.2e-146 524.2 583 54.7
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.2e-144 517.7 593 50.4
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.5e-144 517.3 615 50.9
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 2.0e-144 516.9 600 52.3
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 1.7e-143 513.8 601 56.4
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 6.4e-143 511.9 590 52.7
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 8.4e-143 511.5 587 54.7
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.4e-142 510.8 593 51.4
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 7.1e-142 508.4 587 51.6
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.0e-140 504.6 534 54.7
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 1.0e-140 504.6 595 50.3
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.9e-139 500.4 574 50.5
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 9.6e-139 498.0 597 49.4
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 2.1e-138 496.9 588 52.7
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 2.1e-138 496.9 583 51.5
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 2.8e-138 496.5 614 49.2
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.1e-137 494.6 592 51.4
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 2.4e-137 493.4 591 49.7
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 3.1e-137 493.0 584 51.9
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 5.3e-137 492.3 592 51.2
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.5e-136 490.7 640 47.0
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.5e-136 490.7 640 47.0
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.7e-135 487.3 582 51.5
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 2.1e-133 480.3 594 50.3
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 2.7e-133 479.9 588 50.7
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 2.7e-133 479.9 634 46.8
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.6e-130 470.7 588 50.0
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 1.6e-130 470.7 608 48.7
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.6e-130 470.7 589 50.3
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 9.0e-129 464.9 587 49.2
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.9e-126 457.2 578 50.2
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.9e-123 447.2 579 50.8
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.9e-123 447.2 574 49.5
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 3.7e-122 443.0 586 48.3
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 3.7e-122 443.0 586 48.3
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.1e-121 441.4 589 50.1
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.1e-121 441.4 589 50.3
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.4e-121 440.3 575 48.0
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.2e-120 438.0 599 45.4
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 1.3e-119 434.5 569 48.2
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.7e-119 434.1 586 48.0
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.1e-118 431.4 613 46.7
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 7.9e-117 425.2 576 47.2
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.0e-116 424.9 578 49.0
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 3.1e-113 413.3 459 51.0
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 2.9e-111 406.8 577 48.2
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.1e-110 404.8 593 47.6
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 5.7e-107 392.5 586 44.5
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.1e-105 388.3 569 45.9
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 5.9e-104 382.5 416 53.1
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 5.5e-102 375.9 362 61.3
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.2e-101 374.8 382 56.5
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 3.3e-99 366.7 586 42.7
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 6.9e-97 359.0 571 43.8
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 3.6e-93 346.7 618 41.7
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 6.1e-93 345.9 590 41.9
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 1.9e-78 297.7 550 37.8
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.4e-75 287.0 304 52.3
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 8.3e-74 282.3 528 40.3
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.2e-56 225.3 377 42.2
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.0e-55 222.2 300 43.3
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.9e-54 218.0 204 63.2
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 1.5e-46 191.8 114 86.0
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 6.2e-45 186.4 283 42.0
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.1e-44 184.1 288 45.1
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 2.4e-41 174.5 565 28.7
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 6.6e-39 166.4 182 50.5
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 2.4e-36 157.9 132 62.1
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.1e-36 157.5 183 48.6
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 2.4e-28 131.3 176 51.1
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 6.9e-28 129.8 133 52.6
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 3.4e-27 127.5 135 51.9
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 6.4e-26 123.2 599 25.5
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 8.4e-26 122.9 115 53.9
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 2.4e-25 121.3 398 29.9
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.0e-23 115.9 154 44.2
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 1.7e-23 115.2 598 22.7
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 8.1e-21 106.3 106 51.9
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.1e-20 105.9 185 45.9
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.4e-20 105.5 647 25.0
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.8e-18 97.4 75 58.7
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.0e-15 89.4 95 58.9
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 8.1e-13 79.7 93 40.9
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 4.0e-12 77.4 67 56.7
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.5e-11 75.5 123 44.7
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 1.4e-09 68.9 58 55.2
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 2.7e-08 64.7 129 43.4
Glyma.11G112400 Glycine max HOM05D005482 ORTHO05D006502 1.0e-07 62.8 58 60.3
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 1.3e-07 62.4 79 46.8
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.9e-06 58.5 49 57.1


User provided reference genes

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