Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 1.0e-60 236.5 116 100.0
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.5e-48 196.1 114 86.0
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.4e-41 172.2 114 76.3
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.0e-40 169.1 114 74.6
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.5e-40 167.9 114 74.6
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.0e-39 166.8 114 73.7
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 6.5e-39 164.1 114 72.8
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 1.1e-38 163.3 115 73.0
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 7.4e-35 150.6 111 66.7
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 2.9e-31 138.7 114 62.3
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 5.0e-31 137.9 110 63.6
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.5e-30 136.3 109 63.3
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 3.2e-30 135.2 109 63.3
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 1.6e-29 132.9 115 57.4
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.7e-29 131.3 103 64.1
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.4e-28 129.8 116 55.2
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 2.0e-27 125.9 115 55.7
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.6e-27 125.6 112 56.2
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.7e-26 122.9 115 52.2
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 2.2e-26 122.5 114 56.1
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 8.2e-26 120.6 109 58.7
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 9.1e-25 117.1 97 57.7
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.6e-24 116.3 97 56.7
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 1.6e-24 116.3 97 57.7
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 2.0e-24 115.9 97 57.7
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 2.6e-24 115.5 111 54.1
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 2.2e-23 112.5 115 52.2
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 5.0e-23 111.3 112 53.6
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 5.0e-23 111.3 112 53.6
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.0e-23 111.3 106 52.8
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 8.5e-23 110.5 112 50.9
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.9e-22 109.4 104 52.9
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.2e-21 106.7 97 54.6
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.2e-21 106.7 113 53.1
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.6e-21 106.3 115 45.2
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 2.1e-21 105.9 81 60.5
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.0e-20 103.6 109 49.5
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.8e-20 102.8 109 49.5
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 3.0e-20 102.1 109 49.5
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 5.2e-20 101.3 109 47.7
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.2e-20 101.3 89 57.3
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 2.6e-19 99.0 100 47.0
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 2.6e-19 99.0 117 45.3
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 4.4e-19 98.2 109 47.7
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 5.7e-19 97.8 112 45.5
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 5.7e-19 97.8 108 47.2
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 7.5e-19 97.4 90 54.4
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 7.5e-19 97.4 98 50.0
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 2.2e-18 95.9 95 50.5
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 2.2e-18 95.9 108 47.2
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 2.8e-18 95.5 110 45.5
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 2.8e-18 95.5 110 43.6
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 3.7e-18 95.1 109 47.7
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 3.7e-18 95.1 103 51.5
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 3.7e-18 95.1 113 46.9
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 8.3e-18 94.0 98 51.0
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 2.4e-17 92.4 110 44.5
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 4.1e-17 91.7 96 47.9
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 1.2e-16 90.1 84 52.4
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.6e-16 89.7 113 47.8
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 2.7e-16 89.0 113 46.9
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 3.5e-16 88.6 94 45.7
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 5.9e-16 87.8 108 47.2
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.0e-15 87.0 104 46.2
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.7e-15 86.3 74 58.1
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.7e-15 86.3 74 58.1
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 2.2e-15 85.9 85 49.4
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 2.9e-15 85.5 113 45.1
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 6.5e-15 84.3 85 52.9
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 8.5e-15 84.0 113 44.2
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 1.5e-14 83.2 90 50.0
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 1.5e-14 83.2 85 51.8
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.9e-14 82.8 85 51.8
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 7.2e-14 80.9 99 42.4
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.6e-13 79.7 93 41.9
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 2.1e-13 79.3 88 47.7
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 2.1e-13 79.3 118 41.5
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.8e-12 73.9 72 50.0
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.5e-11 73.2 99 43.4
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 3.4e-11 72.0 112 41.1
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 7.5e-11 70.9 99 46.5
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.7e-10 69.7 111 38.7
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 2.2e-10 69.3 111 38.7
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 2.8e-10 68.9 76 47.4
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 2.8e-10 68.9 76 47.4
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 4.8e-10 68.2 111 36.0
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 4.8e-10 68.2 111 36.0
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 4.8e-10 68.2 111 37.8
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 8.3e-10 67.4 111 37.8
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.4e-09 66.6 111 36.9
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.4e-09 66.6 111 36.9
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 2.4e-09 65.9 111 36.9
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 4.1e-09 65.1 111 36.9
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 7.0e-09 64.3 109 41.3
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.6e-08 63.2 94 40.4
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 2.0e-08 62.8 87 41.4
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 5.9e-08 61.2 62 50.0
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 5.9e-08 61.2 83 47.0
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.3e-07 60.1 87 42.5
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.3e-07 60.1 98 39.8
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.7e-07 59.7 112 35.7
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 5.0e-07 58.2 64 51.6
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 2.5e-06 55.8 83 42.2
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 2.5e-06 55.8 79 44.3
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 2.5e-06 55.8 79 43.0
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 4.2e-06 55.1 47 51.1


User provided reference genes

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