Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 4.8e-85 317.8 159 100.0
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 2.0e-75 285.8 147 93.9
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.7e-74 282.7 149 92.6
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.5e-73 279.6 148 92.6
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 3.2e-73 278.5 148 92.6
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 9.4e-73 276.9 147 92.5
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.6e-72 276.2 147 91.8
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 2.8e-69 265.4 148 85.8
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 2.7e-67 258.8 154 82.5
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 3.6e-64 248.4 159 81.8
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 1.0e-58 230.3 141 75.9
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 1.7e-58 229.6 142 74.6
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 6.6e-58 227.6 148 72.3
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 1.5e-57 226.5 148 70.9
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 1.9e-57 226.1 148 73.0
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 3.3e-57 225.3 143 72.7
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 4.2e-57 224.9 141 74.5
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 5.5e-57 224.6 148 68.9
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 1.2e-56 223.4 150 69.3
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.1e-56 222.6 147 69.4
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 4.7e-56 221.5 148 67.6
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 6.1e-56 221.1 150 70.0
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 1.8e-55 219.5 143 72.0
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 2.3e-55 219.2 141 68.8
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 3.0e-55 218.8 166 65.1
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 5.2e-55 218.0 148 66.9
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 6.8e-55 217.6 148 66.9
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 8.9e-55 217.2 151 66.2
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.2e-54 216.9 148 68.2
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 1.2e-54 216.9 141 72.3
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 1.5e-54 216.5 148 66.9
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 2.0e-54 216.1 148 66.2
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 2.6e-54 215.7 152 65.8
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 2.6e-54 215.7 151 64.9
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 3.4e-54 215.3 155 63.2
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 4.4e-54 214.9 141 68.8
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.3e-53 213.4 144 65.3
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 1.3e-53 213.4 144 65.3
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 2.2e-53 212.6 144 64.6
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 2.2e-53 212.6 148 67.6
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 2.2e-53 212.6 147 63.3
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 3.7e-53 211.8 148 66.9
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 6.3e-53 211.1 141 70.9
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 1.1e-52 210.3 143 67.1
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 1.4e-52 209.9 148 64.9
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 4.1e-52 208.4 143 68.5
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 5.4e-52 208.0 140 70.0
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 9.2e-52 207.2 141 68.1
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 1.2e-51 206.8 155 60.0
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 2.7e-51 205.7 150 62.7
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 3.5e-51 205.3 136 65.4
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 5.9e-51 204.5 148 62.8
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 7.8e-51 204.1 137 65.7
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 1.7e-50 203.0 137 65.0
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 2.3e-50 202.6 145 63.4
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 2.9e-50 202.2 156 62.2
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 5.0e-50 201.4 149 63.1
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 6.6e-50 201.1 137 64.2
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 1.1e-49 200.3 153 60.1
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 2.5e-49 199.1 153 60.1
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 2.5e-49 199.1 145 64.8
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 3.3e-49 198.7 146 63.7
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 5.6e-49 198.0 143 65.7
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 9.5e-49 197.2 141 62.4
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 9.5e-49 197.2 146 64.4
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 9.5e-49 197.2 146 65.1
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 1.2e-48 196.8 136 64.7
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 1.2e-48 196.8 136 64.7
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 1.2e-48 196.8 137 61.3
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 1.6e-48 196.4 140 60.0
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 2.1e-48 196.1 148 61.5
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 2.1e-48 196.1 140 66.4
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 2.1e-48 196.1 146 64.4
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 2.1e-48 196.1 146 63.7
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 2.1e-48 196.1 136 64.0
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 8.0e-48 194.1 141 64.5
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 1.0e-47 193.7 136 63.2
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 1.4e-47 193.4 143 65.0
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 2.3e-47 192.6 136 63.2
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 4.0e-47 191.8 137 62.8
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 6.8e-47 191.0 137 61.3
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 1.2e-46 190.3 149 58.4
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 1.5e-46 189.9 141 63.1
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 2.0e-46 189.5 141 62.4
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 2.6e-46 189.1 146 62.3
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 3.4e-46 188.7 139 62.6
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 4.4e-46 188.3 141 58.9
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 5.8e-46 188.0 149 58.4
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 7.5e-46 187.6 153 60.1
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 3.7e-45 185.3 149 63.1
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 4.1e-44 181.8 141 56.7
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 3.5e-43 178.7 146 56.8
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 6.6e-42 174.5 142 58.5
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 1.1e-41 173.7 127 63.0
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 1.1e-41 173.7 136 59.6
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 6.2e-40 167.9 98 77.6
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 4.0e-39 165.2 118 63.6
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 2.2e-37 159.5 130 54.6
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 5.4e-36 154.8 141 57.4
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 4.6e-35 151.8 136 55.9
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 4.0e-31 138.7 117 59.0
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 1.1e-28 130.6 80 71.2
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 7.8e-27 124.4 145 46.2
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 8.9e-23 110.9 86 59.3
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 1.5e-22 110.2 154 44.2
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 1.4e-20 103.6 145 40.0
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 9.3e-20 100.9 136 39.7
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 1.6e-19 100.1 131 39.7
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 2.1e-16 89.7 101 41.6
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 2.8e-16 89.4 142 31.7
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 1.1e-15 87.4 60 63.3
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 2.2e-13 79.7 113 40.7
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 8.7e-10 67.8 140 30.0
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.1e-09 67.4 140 30.7
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 5.6e-09 65.1 53 62.3
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.6e-08 63.5 30 96.7


User provided reference genes

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