Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0110251 Rosa chinensis HOM05D017855 ORTHO05D017917 6.8e-95 350.5 162 100.0
RcHm_v2.0_Chr2g0111581 Rosa chinensis HOM05D000001 ORTHO05D000501 1.7e-74 282.7 159 83.0
RcHm_v2.0_Chr2g0111611 Rosa chinensis HOM05D000001 ORTHO05D000501 5.1e-74 281.2 159 83.0
FvH4_1g19170 Fragaria vesca HOM05D017855 ORTHO05D017917 3.2e-60 235.3 160 70.0
FAN19G2845 Fragaria x ananassa HOM05D017855 ORTHO05D017917 4.3e-57 224.9 176 61.9
RcHm_v2.0_Chr2g0123571 Rosa chinensis HOM05D000001 ORTHO05D000501 1.1e-36 157.1 151 49.0
RcHm_v2.0_Chr3g0458491 Rosa chinensis HOM05D000001 ORTHO05D017917 1.0e-34 150.6 149 47.0
RcHm_v2.0_Chr4g0398371 Rosa chinensis HOM05D000001 ORTHO05D017917 3.9e-34 148.7 149 50.3
Prupe.8G219600 Prunus persica HOM05D000001 ORTHO05D000501 7.7e-22 107.8 133 39.1
Sed0013035 Sechium edule HOM05D000001 ORTHO05D000501 1.1e-20 104.0 159 34.6
MD10G1162000 Malus domestica HOM05D000001 ORTHO05D000501 4.7e-19 98.6 156 38.5
FvH4_5g33850 Fragaria vesca HOM05D000001 ORTHO05D000501 6.8e-18 94.7 155 34.2
ClCG10G015080 Citrullus lanatus HOM05D000001 ORTHO05D000501 1.5e-17 93.6 154 31.2
CsaV3_3G035380 Cucumis sativus L. HOM05D000001 ORTHO05D000501 1.5e-17 93.6 140 34.3
FAN18G3715 Fragaria x ananassa HOM05D000001 ORTHO05D000501 2.6e-17 92.8 155 33.5
FvH4_6g07740 Fragaria vesca HOM05D000001 ORTHO05D000501 7.5e-17 91.3 154 37.7
FAN02G0862 Fragaria x ananassa HOM05D000001 ORTHO05D000501 7.5e-17 91.3 152 36.8
CsaV3_3G036410 Cucumis sativus L. HOM05D000001 ORTHO05D000501 1.3e-16 90.5 153 34.0
CsaV3_3G036550 Cucumis sativus L. HOM05D000001 ORTHO05D000501 1.3e-16 90.5 153 34.0
FAN14G3551 Fragaria x ananassa HOM05D000001 ORTHO05D000501 2.2e-16 89.7 154 37.0
MELO3C031025.2 Cucumis melo HOM05D000001 ORTHO05D000501 6.3e-16 88.2 155 33.5
ClCG10G019740 Citrullus lanatus HOM05D000001 ORTHO05D000501 1.1e-15 87.4 134 33.6
CsaV3_3G036400 Cucumis sativus L. HOM05D000001 ORTHO05D000039 1.1e-15 87.4 153 33.3
Medtr2g021750 Medicago truncatula HOM05D000172 ORTHO05D004529 1.1e-15 87.4 127 40.2
RcHm_v2.0_Chr3g0457381 Rosa chinensis HOM05D000001 ORTHO05D000501 1.8e-15 86.7 150 32.7
arahy.Tifrunner.gnm1.ann1.47SRJF Arachis hypogaea HOM05D000001 ORTHO05D000501 2.4e-15 86.3 157 33.1
MD10G1162800 Malus domestica HOM05D000001 ORTHO05D000501 4.1e-15 85.5 156 35.3
Cfa000442 Carpinus fangiana HOM05D000001 ORTHO05D000501 7.0e-15 84.7 118 38.1
FAN14G0408 Fragaria x ananassa HOM05D017855 ORTHO05D017917 1.2e-14 84.0 79 49.4
ClCG10G015120 Citrullus lanatus HOM05D000001 ORTHO05D000501 2.0e-14 83.2 159 29.6
FvH4_6g08450 Fragaria vesca HOM05D017855 ORTHO05D017917 2.0e-14 83.2 92 46.7
Prupe.6G319200 Prunus persica HOM05D000001 ORTHO05D000501 2.0e-14 83.2 144 33.3
arahy.Tifrunner.gnm1.ann1.7W4W3Z Arachis hypogaea HOM05D000001 ORTHO05D000501 3.5e-14 82.4 157 31.8
MD04G1192300 Malus domestica HOM05D000001 ORTHO05D000501 7.7e-14 81.3 159 33.3
QL03p019094 Quercus lobata HOM05D000001 ORTHO05D000501 7.7e-14 81.3 137 33.6
TPR.G40636 Trifolium pratense HOM05D000820 ORTHO05D000501 7.7e-14 81.3 132 32.6
Rhsim10G0057700 Rhododendron simsii HOM05D000001 ORTHO05D000501 1.0e-13 80.9 145 33.1
HPP92_004330 Vanilla planifolia HOM05D000001 ORTHO05D000501 1.3e-13 80.5 150 34.7
arahy.Tifrunner.gnm1.ann1.4UZ7ZE Arachis hypogaea HOM05D000001 ORTHO05D000501 1.7e-13 80.1 159 30.8
FvH4_6g07690 Fragaria vesca HOM05D000001 ORTHO05D000501 2.2e-13 79.7 153 30.1
Gorai.008G180800 Gossypium raimondii HOM05D000001 ORTHO05D000501 5.0e-13 78.6 158 34.2
QL02p078664 Quercus lobata HOM05D000001 ORTHO05D000501 5.0e-13 78.6 135 32.6
arahy.Tifrunner.gnm1.ann1.VQ1W7S Arachis hypogaea HOM05D000001 ORTHO05D000501 6.5e-13 78.2 158 27.8
unitig_26.g10301 Utricularia gibba HOM05D000001 ORTHO05D000501 1.1e-12 77.4 163 31.3
Duzib150G0052 Durio zibethinus HOM05D000001 ORTHO05D000501 1.5e-12 77.0 131 32.8
Gohir.A12G164800 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.5e-12 77.0 158 32.9
Sed0003120 Sechium edule HOM05D000001 ORTHO05D000501 1.9e-12 76.6 155 29.0
Sed0005085 Sechium edule HOM05D000001 ORTHO05D000501 1.9e-12 76.6 135 29.6
arahy.Tifrunner.gnm1.ann1.E6ZCRX Arachis hypogaea HOM05D000001 ORTHO05D000501 2.5e-12 76.3 158 29.1
ClCG05G024250 Citrullus lanatus HOM05D000001 ORTHO05D000501 2.5e-12 76.3 162 32.1
BraA02t08345Z Brassica rapa HOM05D000001 ORTHO05D000501 3.2e-12 75.9 158 29.7
CANSAT64G0303 Cannabis sativa HOM05D000001 ORTHO05D000501 4.2e-12 75.5 140 33.6
ClCG10G015160 Citrullus lanatus HOM05D000001 ORTHO05D000501 7.2e-12 74.7 154 28.6
Duzib150G1132 Durio zibethinus HOM05D000001 ORTHO05D000501 7.2e-12 74.7 130 31.5
FAN14G2993 Fragaria x ananassa HOM05D000001 ORTHO05D000501 7.2e-12 74.7 153 29.4
Peaxi162Scf01298g00002 Petunia axillaris HOM05D000001 ORTHO05D000501 7.2e-12 74.7 135 28.9
Aqoxy4G03268 Aquilegia oxysepala HOM05D026885 ORTHO05D026721 9.5e-12 74.3 133 32.3
A02p33210 Brassica napus HOM05D000001 ORTHO05D000501 9.5e-12 74.3 158 29.1
Duzib150G1417 Durio zibethinus HOM05D000001 ORTHO05D000501 9.5e-12 74.3 133 30.8
Gohir.D12G167900 Gossypium hirsutum HOM05D000001 ORTHO05D000501 9.5e-12 74.3 138 35.5
TAR374G0598 Trochodendron aralioides HOM05D000001 ORTHO05D000501 9.5e-12 74.3 163 32.5
Pp3c2_17290 Physcomitrium patens HOM05D000001 ORTHO05D000501 1.2e-11 73.9 139 31.7
arahy.Tifrunner.gnm1.ann1.4JGH0F Arachis hypogaea HOM05D000001 ORTHO05D000501 1.6e-11 73.6 163 28.2
Gorai.011G277400 Gossypium raimondii HOM05D001457 ORTHO05D000501 2.1e-11 73.2 146 32.2
MD17G1255600 Malus domestica HOM05D000001 ORTHO05D000501 2.1e-11 73.2 112 35.7
Phvul.004G064100 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 2.1e-11 73.2 137 29.9
HanXRQChr08g0210951 Helianthus annuus HOM05D000001 ORTHO05D000501 2.7e-11 72.8 164 29.3
Actinidia06054 Actinidia chinensis HOM05D000001 ORTHO05D000501 3.6e-11 72.4 163 31.3
Gorai.011G281000 Gossypium raimondii HOM05D001457 ORTHO05D000501 3.6e-11 72.4 130 33.8
arahy.Tifrunner.gnm1.ann1.N8IDFH Arachis hypogaea HOM05D000001 ORTHO05D000501 4.7e-11 72.0 152 27.6
BcaC03g17180 Brassica carinata HOM05D000001 ORTHO05D000501 4.7e-11 72.0 158 28.5
C02p51020 Brassica napus HOM05D000001 ORTHO05D000501 4.7e-11 72.0 158 28.5
BolC2t11195H Brassica oleracea HOM05D000001 ORTHO05D000501 4.7e-11 72.0 158 28.5
Medtr2g021830 Medicago truncatula HOM05D000001 ORTHO05D000501 4.7e-11 72.0 136 28.7
Atru.chr2.2227 Acer truncatum HOM05D000001 ORTHO05D000501 6.1e-11 71.6 136 33.8
Gohir.A06G174500 Gossypium hirsutum HOM05D000001 ORTHO05D000501 6.1e-11 71.6 121 32.2
Cc00_g21550 Coffea canephora HOM05D000001 ORTHO05D000501 8.0e-11 71.2 152 27.6
Psat7g143320 Pisum sativum HOM05D000001 ORTHO05D016299 8.0e-11 71.2 134 29.9
Aqoxy5G04155 Aquilegia oxysepala HOM05D000001 ORTHO05D000501 1.0e-10 70.9 136 33.8
arahy.Tifrunner.gnm1.ann1.M3W608 Arachis hypogaea HOM05D000001 ORTHO05D000501 1.0e-10 70.9 171 28.7
arahy.Tifrunner.gnm1.ann1.YYPI83 Arachis hypogaea HOM05D000001 ORTHO05D000501 1.0e-10 70.9 152 26.3
ClCG09G018220 Citrullus lanatus HOM05D000001 ORTHO05D034737 1.0e-10 70.9 135 28.9
Aqoxy1G03139 Aquilegia oxysepala HOM05D026885 ORTHO05D026721 1.4e-10 70.5 125 33.6
arahy.Tifrunner.gnm1.ann1.47UL4M Arachis hypogaea HOM05D000001 ORTHO05D000501 1.4e-10 70.5 171 28.7
Ah.03g135020 Amaranthus hybridus HOM05D000001 ORTHO05D000501 1.8e-10 70.1 128 32.0
ClCG10G015140 Citrullus lanatus HOM05D000001 ORTHO05D000501 1.8e-10 70.1 161 29.8
Gorai.011G136200 Gossypium raimondii HOM05D000001 ORTHO05D000501 1.8e-10 70.1 103 34.0
Lj1g0004036 Lotus japonicus HOM05D000001 ORTHO05D022409 2.3e-10 69.7 140 30.7
LjContig00518g0023994 Lotus japonicus HOM05D000001 ORTHO05D022409 2.3e-10 69.7 140 30.7
Mapoly0043s0116 Marchantia polymorpha HOM05D000001 ORTHO05D000501 2.3e-10 69.7 152 28.9
Sed0025124 Sechium edule HOM05D000001 ORTHO05D000501 2.3e-10 69.7 142 28.9
Thecc.10G163200 Theobroma cacao HOM05D000001 ORTHO05D000501 2.3e-10 69.7 126 33.3
Duzib150G0131 Durio zibethinus HOM05D000001 ORTHO05D000501 3.0e-10 69.3 134 29.1
Peaxi162Scf00336g00045 Petunia axillaris HOM05D000001 ORTHO05D000501 3.0e-10 69.3 137 29.2
TPR.G30030 Trifolium pratense HOM05D000820 ORTHO05D000760 3.0e-10 69.3 133 30.1
arahy.Tifrunner.gnm1.ann1.M8R2T1 Arachis hypogaea HOM05D000001 ORTHO05D000501 4.0e-10 68.9 152 26.3
Gorai.011G276200 Gossypium raimondii HOM05D000001 ORTHO05D022812 4.0e-10 68.9 120 34.2
MD16G1072400 Malus domestica HOM05D000001 ORTHO05D000501 4.0e-10 68.9 142 28.9
Thecc.10G163400 Theobroma cacao HOM05D000001 ORTHO05D000501 4.0e-10 68.9 126 33.3
MSTRG.25466 Avicennia marina HOM05D000001 ORTHO05D000501 5.2e-10 68.6 135 27.4
Dinv34984 Davidia involucrata HOM05D000001 ORTHO05D000501 5.2e-10 68.6 135 29.6
Dinv34986 Davidia involucrata HOM05D000001 ORTHO05D000501 5.2e-10 68.6 135 29.6
Gohir.A06G174200 Gossypium hirsutum HOM05D000001 ORTHO05D000501 5.2e-10 68.6 121 33.1
MBI05_g34369_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 5.2e-10 68.6 142 28.2
Oeu054869.1 Olea europaea HOM05D000001 ORTHO05D000501 5.2e-10 68.6 152 30.3
Os07g0629900 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 5.2e-10 68.6 126 32.5
THA.LOC104805163 Tarenaya hassleriana HOM05D000001 ORTHO05D000501 5.2e-10 68.6 162 30.9
Cfa006668 Carpinus fangiana HOM05D000001 ORTHO05D000501 6.8e-10 68.2 110 34.5
Cc01_g01910 Coffea canephora HOM05D000001 ORTHO05D000501 6.8e-10 68.2 167 29.3
MBI05_g29543_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 6.8e-10 68.2 157 28.7
Peaxi162Scf02151g00011 Petunia axillaris HOM05D030197 ORTHO05D020963 6.8e-10 68.2 124 32.3
TPR.G11011 Trifolium pratense HOM05D000001 ORTHO05D000501 6.8e-10 68.2 138 31.2
TPR.G13310 Trifolium pratense HOM05D000001 ORTHO05D000501 6.8e-10 68.2 155 29.7
Cc05_g03730 Coffea canephora HOM05D000001 ORTHO05D000501 8.8e-10 67.8 159 27.0
Peaxi162Scf00746g00027 Petunia axillaris HOM05D030197 ORTHO05D020963 8.8e-10 67.8 124 32.3
Gohir.D10G240800 Gossypium hirsutum HOM05D001457 ORTHO05D029816 1.5e-09 67.0 128 32.0
Duzib150G1637 Durio zibethinus HOM05D008337 ORTHO05D000501 2.0e-09 66.6 127 26.0
Medtr3g030640 Medicago truncatula HOM05D000001 ORTHO05D000501 2.0e-09 66.6 138 29.0
RhsimUnG0138300 Rhododendron simsii HOM05D000001 ORTHO05D000501 2.0e-09 66.6 126 31.0
Lalb_Chr15g0086881 Lupinus albus HOM05D000001 ORTHO05D000501 2.6e-09 66.2 143 27.3
Aqoxy5G04163 Aquilegia oxysepala HOM05D000001 ORTHO05D021353 3.4e-09 65.9 129 34.1
Gorai.011G276800 Gossypium raimondii HOM05D000001 ORTHO05D000501 3.4e-09 65.9 124 30.6
VMungo0720G1318 Vigna mungo HOM05D000001 ORTHO05D000501 3.4e-09 65.9 142 29.6
CiPaw.07G025200 Carya illinoinensis HOM05D000001 ORTHO05D000501 4.4e-09 65.5 135 30.4
Gohir.A10G143500 Gossypium hirsutum HOM05D000001 ORTHO05D000501 4.4e-09 65.5 127 29.1
VMungo0485G0002 Vigna mungo HOM05D000001 ORTHO05D000501 4.4e-09 65.5 135 28.9
Gorai.010G215800 Gossypium raimondii HOM05D000001 ORTHO05D000501 5.7e-09 65.1 121 30.6
Medtr3g030660 Medicago truncatula HOM05D000001 ORTHO05D000501 5.7e-09 65.1 138 29.0
SGA_v2.0_scaffold205G41769 Striga asiatica HOM05D000001 ORTHO05D000501 5.7e-09 65.1 125 29.6
Thecc.10G164500 Theobroma cacao HOM05D000001 ORTHO05D000501 5.7e-09 65.1 122 32.8
AagrBONN_evm.TU.Sc2ySwM_344.5094 Anthoceros agrestis HOM05D000001 ORTHO05D000501 9.8e-09 64.3 153 26.8
Gohir.A06G174400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 9.8e-09 64.3 126 26.2
CSS0029351 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000501 1.3e-08 63.9 134 26.1
Gohir.D10G241200 Gossypium hirsutum HOM05D001457 ORTHO05D029874 1.3e-08 63.9 132 32.6
TPR.G31836 Trifolium pratense HOM05D000001 ORTHO05D000501 1.3e-08 63.9 132 29.5
FAN27G0619 Fragaria x ananassa HOM05D000001 ORTHO05D000501 1.7e-08 63.5 100 33.0
Psat1g183720 Pisum sativum HOM05D000001 ORTHO05D000501 1.7e-08 63.5 98 32.7
Medtr2g104300 Medicago truncatula HOM05D000001 ORTHO05D000501 2.2e-08 63.2 125 30.4
Medtr5g086410 Medicago truncatula HOM05D000001 ORTHO05D000501 2.2e-08 63.2 133 31.6
AUR62032789 Chenopodium quinoa HOM05D000001 ORTHO05D000501 2.8e-08 62.8 159 26.4
Gohir.A05G079350 Gossypium hirsutum HOM05D000001 ORTHO05D000501 3.7e-08 62.4 151 26.5
Gohir.A10G143450 Gossypium hirsutum HOM05D008337 ORTHO05D000501 3.7e-08 62.4 106 29.2
Gohir.D06G184400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 3.7e-08 62.4 119 30.3
AT1G14210 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 4.9e-08 62.0 163 31.9
Manes.04G084851 Manihot esculenta HOM05D000001 ORTHO05D000501 4.9e-08 62.0 122 29.5
RcHm_v2.0_Chr3g0479851 Rosa chinensis HOM05D014156 ORTHO05D017921 4.9e-08 62.0 140 30.0
Gohir.D10G240500 Gossypium hirsutum HOM05D001457 ORTHO05D029874 6.3e-08 61.6 132 31.8
Peaxi162Scf00222g00321 Petunia axillaris HOM05D000001 ORTHO05D000501 8.3e-08 61.2 166 28.9
Psat7g148720 Pisum sativum HOM05D000001 ORTHO05D000501 8.3e-08 61.2 127 29.9
Cfa000496 Carpinus fangiana HOM05D000001 ORTHO05D000501 1.1e-07 60.8 106 29.2
Cc05_g03770 Coffea canephora HOM05D000001 ORTHO05D000501 1.1e-07 60.8 163 23.9
Gorai.011G276400 Gossypium raimondii HOM05D001457 ORTHO05D029874 1.1e-07 60.8 131 31.3
Psat0s2608g0040 Pisum sativum HOM05D000001 ORTHO05D000501 1.1e-07 60.8 140 22.9
Psat5g059080 Pisum sativum HOM05D000001 ORTHO05D000501 1.1e-07 60.8 132 27.3
RcHm_v2.0_Chr3g0477801 Rosa chinensis HOM05D014156 ORTHO05D017921 1.1e-07 60.8 157 30.6
PGSC0003DMG400027455 Solanum tuberosum HOM05D010663 ORTHO05D011474 1.1e-07 60.8 129 27.1
Gohir.A10G227266 Gossypium hirsutum HOM05D001457 ORTHO05D000501 1.4e-07 60.5 109 33.0
Solyc07g006570.4 Solanum lycopersicum HOM05D010663 ORTHO05D011474 1.4e-07 60.5 159 25.2
COL.COLO4_22358 Corchorus olitorius HOM05D000001 ORTHO05D000501 1.8e-07 60.1 135 26.7
Duzib114G0387 Durio zibethinus HOM05D000001 ORTHO05D000501 1.8e-07 60.1 130 28.5
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 1.8e-07 60.1 126 28.6
Cre06.g306550 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D000501 2.4e-07 59.7 136 28.7
Peaxi162Scf00062g00616 Petunia axillaris HOM05D030197 ORTHO05D020963 2.4e-07 59.7 130 32.3
Peaxi162Scf01075g00113 Petunia axillaris HOM05D000001 ORTHO05D020963 2.4e-07 59.7 103 31.1
Sopen07g002650 Solanum pennellii HOM05D010663 ORTHO05D011474 3.1e-07 59.3 124 28.2
CsaV3_5G038060 Cucumis sativus L. HOM05D000001 ORTHO05D000501 1.2e-06 57.4 142 28.2
Duzib114G0102 Durio zibethinus HOM05D000001 ORTHO05D000501 1.6e-06 57.0 128 28.9
TPR.G28358 Trifolium pratense HOM05D000001 ORTHO05D000501 1.6e-06 57.0 163 25.2
Haze_04103 Corylus avellana HOM05D000001 ORTHO05D000501 2.0e-06 56.6 136 28.7
RcHm_v2.0_Chr3g0477761 Rosa chinensis HOM05D014156 ORTHO05D017921 2.7e-06 56.2 122 27.9
QL03p023809 Quercus lobata HOM05D000001 ORTHO05D000501 3.5e-06 55.8 128 28.9
QL03p023892 Quercus lobata HOM05D000001 ORTHO05D000501 3.5e-06 55.8 128 28.9
Thecc.09G278400 Theobroma cacao HOM05D008337 ORTHO05D000501 3.5e-06 55.8 135 24.4
ClCG09G018200 Citrullus lanatus HOM05D000001 ORTHO05D000501 4.5e-06 55.5 110 27.3
PSO384G0348 Papaver somniferum HOM05D028390 ORTHO05D021353 4.5e-06 55.5 184 29.3
Ah.03g135010 Amaranthus hybridus HOM05D000001 ORTHO05D000501 7.7e-06 54.7 162 25.9
Medtr5g022810 Medicago truncatula HOM05D000001 ORTHO05D000501 7.7e-06 54.7 102 31.4


User provided reference genes

Program Settings