Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.6e-109 399.4 200 100.0
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 1.8e-100 369.4 200 92.0
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.9e-99 365.9 200 91.0
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 6.3e-90 334.3 195 84.1
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 6.5e-87 324.3 189 83.1
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 4.5e-80 301.6 186 79.0
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.3e-79 300.1 188 78.2
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 2.9e-79 298.9 191 76.4
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 2.9e-79 298.9 186 78.5
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 6.5e-79 297.7 186 78.5
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 2.7e-77 292.4 194 74.2
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 7.9e-77 290.8 186 76.3
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 1.4e-76 290.0 185 75.1
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.4e-76 290.0 182 78.0
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.3e-76 289.3 186 78.5
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 3.9e-76 288.5 185 76.2
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 1.1e-75 287.0 188 75.0
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 4.4e-75 285.0 195 71.8
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 4.4e-75 285.0 196 73.0
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 7.4e-75 284.3 185 73.5
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 6.3e-74 281.2 180 76.7
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 6.3e-74 281.2 184 75.5
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 6.3e-74 281.2 189 74.6
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 6.3e-74 281.2 185 73.0
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 6.3e-74 281.2 182 75.8
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.8e-73 279.6 184 73.4
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 1.8e-73 279.6 189 73.0
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 2.4e-73 279.3 184 75.0
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 3.1e-73 278.9 187 73.8
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 5.3e-73 278.1 187 73.3
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 6.9e-73 277.7 184 71.7
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 9.1e-73 277.3 188 71.8
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 2.0e-72 276.2 189 71.4
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 3.4e-72 275.4 198 70.2
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 3.4e-72 275.4 199 67.8
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 4.5e-72 275.0 187 71.7
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 4.5e-72 275.0 187 71.7
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 7.7e-72 274.2 198 70.7
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 7.7e-72 274.2 189 70.9
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 1.3e-71 273.5 187 70.1
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.7e-71 273.1 187 72.2
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.7e-71 273.1 187 72.2
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 2.9e-71 272.3 184 74.5
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 5.0e-71 271.6 185 70.8
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 5.0e-71 271.6 179 72.1
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 6.5e-71 271.2 203 66.5
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 1.4e-70 270.0 184 70.7
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.4e-70 270.0 189 72.0
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.9e-70 269.6 199 65.8
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.9e-70 269.6 187 70.1
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 2.5e-70 269.2 196 69.4
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 3.2e-70 268.9 199 65.3
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 9.4e-70 267.3 189 69.3
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.2e-69 266.9 201 66.7
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 1.2e-69 266.9 189 70.4
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 1.6e-69 266.5 188 71.3
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.6e-69 266.5 178 73.0
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 2.1e-69 266.2 187 67.4
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.1e-69 266.2 187 70.6
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 2.7e-69 265.8 189 68.8
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 1.8e-68 263.1 184 70.7
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 3.0e-68 262.3 187 67.9
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 3.0e-68 262.3 187 67.9
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 3.0e-68 262.3 195 68.2
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 5.2e-68 261.5 182 73.1
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 5.2e-68 261.5 187 69.5
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 6.7e-68 261.2 191 66.0
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 6.7e-68 261.2 188 69.7
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 8.8e-68 260.8 190 68.4
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 8.8e-68 260.8 196 67.9
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.1e-67 260.4 185 70.3
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 1.1e-67 260.4 184 69.0
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 2.0e-67 259.6 188 68.6
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 2.6e-67 259.2 198 66.2
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 2.6e-67 259.2 198 66.2
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 2.6e-67 259.2 198 66.2
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 3.3e-67 258.8 182 70.3
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 7.4e-67 257.7 181 69.6
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 7.4e-67 257.7 191 70.2
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 9.7e-67 257.3 182 71.4
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 1.3e-66 256.9 190 70.0
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 2.2e-66 256.1 159 75.5
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 2.8e-66 255.8 199 63.8
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 2.8e-66 255.8 192 65.6
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 2.4e-65 252.7 160 73.1
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 3.1e-65 252.3 182 68.1
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 4.1e-65 251.9 179 70.9
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 9.1e-65 250.8 182 68.1
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 1.2e-64 250.4 179 68.7
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.2e-64 250.4 180 70.0
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 2.9e-63 245.7 183 66.1
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 5.0e-63 245.0 180 66.1
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 6.5e-63 244.6 179 67.6
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 3.2e-62 242.3 162 72.2
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 2.1e-61 239.6 179 68.2
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 2.7e-61 239.2 182 66.5
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 8.0e-61 237.7 183 63.4
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 2.3e-60 236.1 182 65.9
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.7e-58 229.9 183 61.7
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 6.3e-58 228.0 190 60.0
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 3.5e-56 222.2 187 60.4
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.2e-55 219.5 174 61.5
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 5.0e-55 218.4 158 67.1
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 1.5e-54 216.9 188 58.0
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 6.1e-53 211.5 123 79.7
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 8.3e-50 201.1 176 56.8
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.4e-49 199.5 190 56.8
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 9.1e-49 197.6 149 65.8
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 2.7e-48 196.1 130 74.6
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.0e-47 194.1 152 62.5
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 6.5e-47 191.4 180 57.8
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 8.6e-47 191.0 123 76.4
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.1e-46 190.7 122 76.2
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 2.1e-45 186.4 185 53.5
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 4.7e-45 185.3 150 60.0
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 3.4e-43 179.1 146 58.9
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 5.7e-43 178.3 179 53.1
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 1.7e-42 176.8 149 60.4
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 1.8e-41 173.3 195 50.3
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.3e-39 167.2 122 67.2
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.1e-33 147.5 128 52.3
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 1.2e-32 144.1 94 77.7
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 7.8e-32 141.4 84 82.1
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 1.3e-31 140.6 187 44.4
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 1.3e-31 140.6 187 44.4
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 1.5e-30 137.1 126 52.4
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 1.4e-28 130.6 152 46.7
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 5.8e-27 125.2 173 42.8
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 3.0e-23 112.8 183 37.7
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 3.6e-21 105.9 85 61.2
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 4.0e-20 102.4 173 37.6
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.5e-19 100.5 153 39.2
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 3.4e-19 99.4 56 82.1
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 1.3e-18 97.4 61 75.4
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 1.4e-17 94.0 180 35.0
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 4.6e-08 62.4 55 50.9


User provided reference genes

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