Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0109971 Rosa chinensis HOM05D007867 ORTHO05D009953 7.6e-27 123.2 69 100.0
FvH4_1g18950 Fragaria vesca HOM05D007867 ORTHO05D009953 1.6e-24 115.5 71 94.4
Thecc.01G083600 Theobroma cacao HOM05D007867 ORTHO05D009953 4.4e-19 97.4 67 86.6
Sc03g0000590 Simmondsia chinensis HOM05D007867 ORTHO05D009953 1.7e-18 95.5 70 82.9
Actinidia36378 Actinidia chinensis HOM05D007867 ORTHO05D009953 2.9e-18 94.7 67 68.7
CiPaw.08G145800 Carya illinoinensis HOM05D007867 ORTHO05D009953 2.9e-18 94.7 67 85.1
Nn1g05680 Nelumbo nucifera HOM05D007867 ORTHO05D009953 2.9e-18 94.7 67 86.6
CiPaw.08G145600 Carya illinoinensis HOM05D007867 ORTHO05D009953 3.8e-18 94.4 68 82.4
Dinv36978 Davidia involucrata HOM05D007867 ORTHO05D009953 6.4e-18 93.6 69 82.6
Lalb_Chr09g0325761 Lupinus albus HOM05D007867 ORTHO05D009953 6.4e-18 93.6 68 85.3
FAN28G0366 Fragaria x ananassa HOM05D007867 ORTHO05D009953 1.4e-17 92.4 46 93.5
MD10G1057100 Malus domestica HOM05D007867 ORTHO05D009953 1.9e-17 92.0 67 80.6
Zm00001eb061250 Zea mays HOM05D007867 ORTHO05D009953 2.4e-17 91.7 69 82.6
Sed0014306 Sechium edule HOM05D007867 ORTHO05D009953 7.1e-17 90.1 68 82.4
Gohir.A11G209001 Gossypium hirsutum HOM05D007867 ORTHO05D009953 1.6e-16 89.0 67 80.6
vmacro19595 Vaccinium macrocarpon HOM05D007867 ORTHO05D009953 2.7e-16 88.2 70 81.4
CiPaw.08G128500 Carya illinoinensis HOM05D007867 ORTHO05D009953 3.5e-16 87.8 67 68.7
Gohir.D11G214500 Gossypium hirsutum HOM05D007867 ORTHO05D009953 6.0e-16 87.0 67 82.1
ATR0800G156 Amborella trichopoda HOM05D007867 ORTHO05D009953 2.3e-15 85.1 67 80.6
Os07g0191650 Oryza sativa ssp. japonica HOM05D007867 ORTHO05D009953 3.9e-15 84.3 76 73.7
CiPaw.05G026800 Carya illinoinensis HOM05D007867 ORTHO05D009953 2.5e-14 81.6 66 81.8
Hund00401 Selenicereus undatus HOM05D007867 ORTHO05D009953 7.3e-14 80.1 72 76.4
Lj2g0008804 Lotus japonicus HOM05D007867 ORTHO05D009953 1.3e-13 79.3 70 74.3
Gohir.D03G034400 Gossypium hirsutum HOM05D007867 ORTHO05D009953 1.1e-12 76.3 67 76.1
Gorai.003G036100 Gossypium raimondii HOM05D007867 ORTHO05D009953 1.1e-12 76.3 67 76.1
Manes.13G104200 Manihot esculenta HOM05D007867 ORTHO05D009953 1.4e-12 75.9 67 74.6
Nn5g29770 Nelumbo nucifera HOM05D007867 ORTHO05D009953 1.4e-12 75.9 67 74.6
CiPaw.07G042200 Carya illinoinensis HOM05D007867 ORTHO05D009953 2.4e-12 75.1 66 75.8
Ca_13472_v3 Cicer arietinum L. HOM05D007867 ORTHO05D009953 3.1e-12 74.7 67 73.1
GSVIVG01006775001 Vitis vinifera HOM05D007867 ORTHO05D009953 3.1e-12 74.7 67 73.1
EL10Ac9g22129 Beta vulgaris HOM05D007867 ORTHO05D009953 4.0e-12 74.3 73 68.5
CSS0005733 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 1.2e-11 72.8 44 77.3
FAN23G2231 Fragaria x ananassa HOM05D007867 ORTHO05D009953 1.5e-11 72.4 78 53.8
Hma1.2p1_1119F.1_g259180 Hydrangea macrophylla HOM05D007867 ORTHO05D009953 1.5e-11 72.4 49 75.5
Zm00001eb302470 Zea mays HOM05D007867 ORTHO05D009953 1.5e-11 72.4 78 67.9
Lalb_Chr16g0383101 Lupinus albus HOM05D007867 ORTHO05D009953 2.6e-11 71.6 50 76.0
Oeu033792.2 Olea europaea HOM05D007867 ORTHO05D009953 3.4e-11 71.2 41 87.8
RhsimUnG0066800 Rhododendron simsii HOM05D007867 ORTHO05D009953 3.4e-11 71.2 80 52.5
Cc02_g20570 Coffea canephora HOM05D007867 ORTHO05D009953 7.6e-11 70.1 66 71.2
Potri.015G025600 Populus trichocarpa HOM05D007867 ORTHO05D009953 9.9e-11 69.7 66 59.1
Cc07_g07830 Coffea canephora HOM05D007867 ORTHO05D009953 2.2e-10 68.6 66 69.7
TPR.G37059 Trifolium pratense HOM05D007867 ORTHO05D009953 2.2e-10 68.6 69 55.1
Glyma.09G202700 Glycine max HOM05D007867 ORTHO05D009953 4.9e-10 67.4 70 71.4
Eucgr.I02581 Eucalyptus grandis HOM05D007867 ORTHO05D009953 2.4e-09 65.1 52 65.4
DCAR_021457 Daucus carota HOM05D000419 ORTHO05D000692 3.2e-09 64.7 42 76.2
Medtr5g030870 Medicago truncatula HOM05D007867 ORTHO05D009953 4.2e-09 64.3 67 65.7
Oeu014206.1 Olea europaea HOM05D007867 ORTHO05D009953 9.3e-09 63.2 48 66.7
CiPaw.06G161100 Carya illinoinensis HOM05D007867 ORTHO05D009953 1.2e-08 62.8 50 66.0
Ciclev10027423m.g Citrus clementina HOM05D007867 ORTHO05D009953 1.2e-08 62.8 67 65.7
Solyc01g106300.3 Solanum lycopersicum HOM05D007867 ORTHO05D009953 2.1e-08 62.0 56 66.1
Gohir.A05G401300 Gossypium hirsutum HOM05D007867 ORTHO05D009953 2.7e-08 61.6 77 50.6
Mapoly0137s0033 Marchantia polymorpha HOM05D007867 ORTHO05D009953 3.5e-08 61.2 86 58.1
Potri.015G025700 Populus trichocarpa HOM05D007867 ORTHO05D009953 3.5e-08 61.2 67 65.7
Prupe.6G209900 Prunus persica HOM05D007867 ORTHO05D009953 1.3e-07 59.3 70 65.7
Haze_03934 Corylus avellana HOM05D007867 ORTHO05D009953 1.8e-07 58.9 67 64.2
Gorai.007G230100 Gossypium raimondii HOM05D007867 ORTHO05D009953 1.8e-07 58.9 67 64.2
CiPaw.08G128400 Carya illinoinensis HOM05D007867 ORTHO05D009953 2.3e-07 58.5 29 86.2
Prupe.8G075700 Prunus persica HOM05D007867 ORTHO05D009953 6.7e-07 57.0 68 64.7
TPR.G40500 Trifolium pratense HOM05D007867 ORTHO05D009953 1.5e-06 55.8 30 86.7
Cpa.g.c33237.1 Carica papaya HOM05D007867 ORTHO05D009953 2.5e-06 55.1 67 64.2
Nitab4.5_0000036g0410 Nicotiana tabacum HOM05D007867 ORTHO05D009953 4.3e-06 54.3 64 64.1
Nitab4.5_0009046g0010 Nicotiana tabacum HOM05D007867 ORTHO05D009953 4.3e-06 54.3 64 64.1
Phvul.002G143000 Phaseolus vulgaris HOM05D007867 ORTHO05D009953 5.6e-06 53.9 25 92.0
ClCG09G016440 Citrullus lanatus HOM05D007867 ORTHO05D009953 9.6e-06 53.1 47 59.6
Gohir.A02G146200 Gossypium hirsutum HOM05D007867 ORTHO05D009953 9.6e-06 53.1 67 62.7
SHI12190 Sapria himalayana HOM05D007867 ORTHO05D009953 9.6e-06 53.1 46 58.7


User provided reference genes

Program Settings