Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 2.1e-311 1071.6 601 100.0
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.7e-239 832.8 601 79.4
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 8.4e-239 830.5 601 79.2
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 5.8e-216 754.6 602 72.9
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.6e-184 649.4 439 82.0
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 3.0e-135 486.5 612 52.9
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 7.1e-121 438.7 626 48.9
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 9.6e-118 428.3 618 48.9
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 6.0e-96 355.9 617 43.9
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 4.6e-88 329.7 610 41.8
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 1.1e-86 325.1 612 42.2
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 2.5e-86 323.9 478 45.6
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 3.1e-84 317.0 609 41.1
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 9.4e-81 305.4 437 46.9
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 4.3e-78 296.6 504 43.3
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 3.1e-76 290.4 503 44.1
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 6.9e-76 289.3 606 39.6
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 2.2e-74 284.3 375 50.9
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.4e-73 281.6 496 42.3
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 9.4e-73 278.9 446 44.8
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 2.1e-72 277.7 446 44.6
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 2.1e-72 277.7 323 52.0
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 2.1e-72 277.7 337 49.6
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.7e-72 277.3 297 55.6
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 6.1e-72 276.2 299 53.2
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 7.9e-72 275.8 337 53.4
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 8.8e-71 272.3 467 45.0
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.7e-69 268.1 462 43.5
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 3.7e-69 266.9 325 51.7
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 4.8e-69 266.5 425 46.1
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.1e-68 265.4 455 43.7
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.1e-68 263.8 630 36.3
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 3.1e-68 263.8 495 42.0
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.0e-67 261.2 448 44.0
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 2.0e-67 261.2 298 52.0
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.6e-67 260.8 449 43.7
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 3.4e-67 260.4 409 44.7
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 5.9e-67 259.6 524 41.4
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 5.9e-67 259.6 604 39.2
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 2.9e-66 257.3 485 40.0
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 8.5e-66 255.8 524 42.6
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 3.2e-65 253.8 303 51.5
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.6e-64 251.5 430 40.9
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 2.7e-64 250.8 672 35.0
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.0e-63 248.8 446 43.0
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 1.8e-63 248.1 445 43.4
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 1.1e-62 245.4 419 43.4
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 1.1e-62 245.4 533 37.5
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 1.5e-62 245.0 320 47.5
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 2.6e-62 244.2 374 46.3
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 7.4e-62 242.7 336 47.9
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 7.4e-62 242.7 336 47.9
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.7e-61 241.5 302 49.0
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.2e-61 241.1 434 43.3
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 4.8e-61 240.0 281 50.9
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 1.1e-60 238.8 371 43.7
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 4.1e-60 236.9 377 43.5
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 9.1e-60 235.7 297 49.2
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 3.5e-59 233.8 426 39.0
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 3.5e-59 233.8 349 45.0
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 5.9e-59 233.0 394 41.4
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 2.2e-58 231.1 421 41.6
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.2e-58 231.1 344 48.3
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 8.5e-58 229.2 422 40.3
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 8.5e-58 229.2 464 39.4
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 1.5e-57 228.4 430 42.6
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 3.2e-57 227.3 394 43.4
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 7.2e-57 226.1 301 48.2
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.2e-56 225.3 318 46.9
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 8.0e-56 222.6 362 45.9
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 4.0e-55 220.3 287 48.8
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 6.7e-55 219.5 472 37.7
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 1.2e-54 218.8 349 43.8
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 2.6e-54 217.6 298 46.6
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 2.6e-54 217.6 373 42.9
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.3e-54 217.2 435 39.1
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 9.7e-54 215.7 322 42.5
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 1.7e-53 214.9 431 37.6
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 1.7e-53 214.9 388 40.5
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 4.8e-53 213.4 297 47.8
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 6.3e-53 213.0 447 37.4
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 6.3e-53 213.0 457 37.6
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.8e-52 211.5 350 43.4
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 1.8e-52 211.5 467 37.7
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.6e-51 208.4 395 41.8
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 2.7e-51 207.6 450 37.3
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 4.5e-51 206.8 504 39.5
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.0e-50 205.7 369 43.9
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 1.0e-50 205.7 498 34.5
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 1.7e-50 204.9 367 40.1
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 2.9e-50 204.1 493 39.4
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 5.0e-50 203.4 329 41.6
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 1.5e-49 201.8 494 37.2
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 7.2e-49 199.5 611 32.2
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 1.2e-48 198.7 458 38.9
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 2.1e-48 198.0 325 45.2
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 1.8e-47 194.9 301 46.2
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 2.0e-43 181.4 503 34.8
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 3.5e-43 180.6 500 35.0
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 3.5e-43 180.6 500 35.0
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 4.5e-43 180.3 494 34.2
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.3e-42 178.7 281 45.9
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 2.9e-42 177.6 505 36.0
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 5.0e-42 176.8 446 36.8
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 1.9e-41 174.9 476 37.0
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 3.3e-41 174.1 433 37.6
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.3e-41 174.1 251 44.2
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 1.2e-40 172.2 356 37.4
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 5.7e-38 163.3 257 42.8
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 4.9e-37 160.2 459 33.1
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 2.7e-35 154.5 189 49.2
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 3.5e-35 154.1 419 34.6
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 4.5e-35 153.7 452 32.7
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 2.9e-34 151.0 275 39.3
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 5.0e-34 150.2 273 41.0
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 3.3e-33 147.5 230 42.2
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 3.1e-31 141.0 391 34.5
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 6.0e-27 126.7 313 32.3
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 1.0e-26 125.9 258 39.5
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.5e-25 122.1 282 34.0
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 4.3e-25 120.6 186 41.4
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 5.6e-25 120.2 280 37.5
FAN26G3170 Fragaria x ananassa HOM05D005322 ORTHO05D006746 6.0e-19 100.1 62 80.6
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.1e-15 89.4 259 27.8
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 6.8e-15 86.7 485 27.8
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 3.7e-13 80.9 175 36.0
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 1.4e-12 79.0 273 29.3
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 2.4e-12 78.2 311 25.4
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 3.1e-07 61.2 93 43.0
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 4.0e-07 60.8 47 61.7
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 2.0e-06 58.5 365 24.4


User provided reference genes

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