Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0109861 Rosa chinensis HOM05D005310 ORTHO05D006920 1.0e-63 246.5 121 100.0
RcHm_v2.0_Chr5g0011651 Rosa chinensis HOM05D005310 ORTHO05D006920 3.1e-60 235.0 117 99.1
FAN25G3188 Fragaria x ananassa HOM05D005310 ORTHO05D006920 6.5e-58 227.3 120 93.3
FAN21G2773 Fragaria x ananassa HOM05D005310 ORTHO05D006920 2.1e-56 222.2 116 94.0
FAN16G3592 Fragaria x ananassa HOM05D005310 ORTHO05D006920 2.7e-56 221.9 115 94.8
FAN11G0629 Fragaria x ananassa HOM05D005310 ORTHO05D006920 2.7e-51 205.3 105 94.3
FvH4_3g07310 Fragaria vesca HOM05D005310 ORTHO05D006920 5.9e-51 204.1 105 94.3
Prupe.4G066900 Prunus persica HOM05D005310 ORTHO05D006920 1.5e-49 199.5 105 91.4
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 2.7e-48 195.3 105 88.6
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 2.7e-48 195.3 105 88.6
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 3.6e-48 194.9 105 86.7
Rhsim02G0147000 Rhododendron simsii HOM05D005310 ORTHO05D006920 6.1e-48 194.1 110 82.7
Atru.chr10.1571 Acer truncatum HOM05D005310 ORTHO05D006920 8.0e-48 193.7 105 88.6
arahy.Tifrunner.gnm1.ann1.W2RHW2 Arachis hypogaea HOM05D005310 ORTHO05D006920 8.0e-48 193.7 103 86.4
CiPaw.09G137200 Carya illinoinensis HOM05D005310 ORTHO05D006920 1.0e-47 193.4 105 85.7
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 1.4e-47 193.0 105 86.7
Duzib192G0594 Durio zibethinus HOM05D005310 ORTHO05D006920 5.2e-47 191.0 105 85.7
Lalb_Chr12g0204951 Lupinus albus HOM05D005310 ORTHO05D006920 6.8e-47 190.7 111 80.2
CsaV3_1G033090 Cucumis sativus L. HOM05D005310 ORTHO05D006920 1.2e-46 189.9 105 82.9
Ciclev10018335m.g Citrus clementina HOM05D005310 ORTHO05D006920 1.5e-46 189.5 115 78.3
Sed0028201 Sechium edule HOM05D005310 ORTHO05D006920 2.6e-46 188.7 105 83.8
MELO3C002677.2 Cucumis melo HOM05D005310 ORTHO05D006920 3.4e-46 188.3 105 83.8
vmacro16023 Vaccinium macrocarpon HOM05D005310 ORTHO05D006920 4.4e-46 188.0 128 71.9
GSVIVG01021256001 Vitis vinifera HOM05D005310 ORTHO05D006920 5.7e-46 187.6 105 83.8
Aqoxy1G01994 Aquilegia oxysepala HOM05D005310 ORTHO05D006920 7.5e-46 187.2 105 84.8
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 7.5e-46 187.2 105 83.8
VMungo0251G0247 Vigna mungo HOM05D005310 ORTHO05D006920 7.5e-46 187.2 105 81.0
TWI53G0456 Tripterygium wilfordii HOM05D005310 ORTHO05D006920 9.8e-46 186.8 105 83.8
HanXRQChr11g0343901 Helianthus annuus HOM05D005310 ORTHO05D006920 1.3e-45 186.4 105 84.8
Nn3g21104 Nelumbo nucifera HOM05D005310 ORTHO05D006920 1.3e-45 186.4 105 84.8
Hma1.2p1_2416F.1_g321730 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 1.7e-45 186.0 99 86.9
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 2.2e-45 185.7 105 83.8
Manes.16G042900 Manihot esculenta HOM05D005310 ORTHO05D006920 2.2e-45 185.7 105 86.7
Medtr8g087310 Medicago truncatula HOM05D005310 ORTHO05D006920 2.2e-45 185.7 105 81.0
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 2.8e-45 185.3 105 81.0
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 3.7e-45 184.9 105 81.0
QL05p049965 Quercus lobata HOM05D005310 ORTHO05D006920 3.7e-45 184.9 99 85.9
AUR62041821 Chenopodium quinoa HOM05D005310 ORTHO05D006920 4.8e-45 184.5 105 79.0
Eucgr.E02785 Eucalyptus grandis HOM05D005310 ORTHO05D006920 4.8e-45 184.5 105 84.8
Glyma.05G161000 Glycine max HOM05D005310 ORTHO05D006920 4.8e-45 184.5 105 81.0
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 4.8e-45 184.5 105 81.0
ATR0012G016 Amborella trichopoda HOM05D005310 ORTHO05D006920 6.3e-45 184.1 105 80.0
ClCG03G007450 Citrullus lanatus HOM05D005310 ORTHO05D006920 6.3e-45 184.1 109 78.9
PSO210G5690 Papaver somniferum HOM05D005310 ORTHO05D006920 8.3e-45 183.7 105 82.9
CSS0016268 Camellia sinensis var. sinensis HOM05D005310 ORTHO05D006920 1.4e-44 183.0 105 80.0
Lj4g0024191 Lotus japonicus HOM05D005310 ORTHO05D006920 1.4e-44 183.0 105 81.0
EL10Ac8g20559 Beta vulgaris HOM05D005310 ORTHO05D006920 1.8e-44 182.6 105 79.0
Ca_17897_v3 Cicer arietinum L. HOM05D005310 ORTHO05D006920 1.8e-44 182.6 105 80.0
Thecc.06G165700 Theobroma cacao HOM05D005310 ORTHO05D006920 2.4e-44 182.2 105 80.0
Phvul.002G241100 Phaseolus vulgaris HOM05D005310 ORTHO05D006920 3.1e-44 181.8 105 79.0
TPR.G6733 Trifolium pratense HOM05D005310 ORTHO05D006920 3.1e-44 181.8 105 79.0
Cc02_g15590 Coffea canephora HOM05D005310 ORTHO05D006920 5.4e-44 181.0 103 82.5
Glyma.08G118400 Glycine max HOM05D005310 ORTHO05D006920 7.0e-44 180.6 105 79.0
Aa31LG6G1520 Aethionema arabicum HOM05D005310 ORTHO05D006920 9.1e-44 180.3 105 79.0
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 9.1e-44 180.3 105 84.8
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 1.2e-43 179.9 105 80.0
Potri.004G061200 Populus trichocarpa HOM05D005310 ORTHO05D006920 1.2e-43 179.9 105 81.0
Sabra04G0040500 Salix brachista HOM05D005310 ORTHO05D006920 1.2e-43 179.9 105 80.0
CAN.G411.52 Capsicum annuum HOM05D005310 ORTHO05D006920 1.6e-43 179.5 105 84.8
Oeu040921.3 Olea europaea HOM05D005310 ORTHO05D006920 2.7e-43 178.7 127 70.9
Ah.14g086990 Amaranthus hybridus HOM05D005310 ORTHO05D006920 3.5e-43 178.3 105 80.0
Psat7g068720 Pisum sativum HOM05D005310 ORTHO05D006920 5.9e-43 177.6 105 79.0
Solyc02g072160.4 Solanum lycopersicum HOM05D005310 ORTHO05D006920 7.7e-43 177.2 105 83.8
Sp7g17520 Schrenkiella parvula HOM05D005310 ORTHO05D006920 1.0e-42 176.8 105 78.1
Peaxi162Scf00202g01112 Petunia axillaris HOM05D005310 ORTHO05D006920 1.7e-42 176.0 105 80.0
PGR042G1369 Punica granatum HOM05D005310 ORTHO05D006920 1.7e-42 176.0 105 78.1
Lj1A1175T55 Lonicera japonica HOM05D005310 ORTHO05D006920 2.2e-42 175.6 123 73.2
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 2.9e-42 175.3 105 79.0
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 3.8e-42 174.9 105 79.0
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 3.8e-42 174.9 105 81.9
Actinidia02744 Actinidia chinensis HOM05D005310 ORTHO05D006920 6.5e-42 174.1 119 73.9
Thhalv10024714m.g Eutrema salsugineum HOM05D005310 ORTHO05D006920 8.5e-42 173.7 105 77.1
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 1.1e-41 173.3 105 78.1
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 1.1e-41 173.3 105 78.1
CARHR225670 Cardamine hirsuta HOM05D005310 ORTHO05D006920 2.5e-41 172.2 105 77.1
AL7G35440 Arabidopsis lyrata HOM05D005310 ORTHO05D006920 3.2e-41 171.8 105 76.2
AT4G18810 Arabidopsis thaliana HOM05D005310 ORTHO05D006920 3.2e-41 171.8 105 76.2
Carub.0007s2242 Capsella rubella HOM05D005310 ORTHO05D006920 4.2e-41 171.4 105 75.2
Nitab4.5_0005937g0010 Nicotiana tabacum HOM05D005310 ORTHO05D006920 4.2e-41 171.4 105 80.0
Os02g0234500 Oryza sativa ssp. japonica HOM05D005310 ORTHO05D006920 4.2e-41 171.4 105 74.3
Zm00001eb204900 Zea mays HOM05D005310 ORTHO05D006920 5.5e-41 171.0 102 75.5
CDE04G2110 Ceratophyllum demersum HOM05D005310 ORTHO05D006920 1.2e-40 169.9 105 72.4
THA.LOC104806167 Tarenaya hassleriana HOM05D005310 ORTHO05D006920 1.2e-40 169.9 105 72.4
Nitab4.5_0000437g0070 Nicotiana tabacum HOM05D005310 ORTHO05D006920 1.6e-40 169.5 105 79.0
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 4.7e-40 167.9 105 76.2
SGA_v2.0_scaffold16G07714 Striga asiatica HOM05D005310 ORTHO05D006920 2.0e-38 162.5 87 85.1
unitig_0.g743 Utricularia gibba HOM05D005310 ORTHO05D006920 2.6e-38 162.2 105 75.2
AUR62039478 Chenopodium quinoa HOM05D005310 ORTHO05D006920 3.4e-38 161.8 98 73.5
Cpa.g.sc7.109 Carica papaya HOM05D005310 ORTHO05D006920 1.3e-37 159.8 137 60.6
Lsat_1_v5_gn_1_110100 Lactuca sativa HOM05D005310 ORTHO05D006920 4.9e-37 157.9 89 83.1
HPP92_004025 Vanilla planifolia HOM05D005310 ORTHO05D006920 4.9e-37 157.9 105 67.6
HPP92_004012 Vanilla planifolia HOM05D005310 ORTHO05D006920 6.3e-37 157.5 105 67.6
Dinv32339 Davidia involucrata HOM05D005310 ORTHO05D006920 8.3e-37 157.1 102 72.5
Migut.M01009 Erythranthe guttata HOM05D005310 ORTHO05D006920 3.1e-36 155.2 88 81.8
Mapoly0037s0097 Marchantia polymorpha HOM05D005310 ORTHO05D006920 5.4e-36 154.5 105 63.8
Pp3c26_9450 Physcomitrium patens HOM05D005310 ORTHO05D006920 5.4e-36 154.5 105 67.6
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 1.2e-35 153.3 105 70.5
Haze_05378 Corylus avellana HOM05D005310 ORTHO05D006920 1.6e-35 152.9 106 68.9
AagrBONN_evm.TU.Sc2ySwM_362.2005 Anthoceros agrestis HOM05D005310 ORTHO05D006920 5.0e-34 147.9 105 62.9
RcHm_v2.0_Chr0c19g0500071 Rosa chinensis HOM05D005310 ORTHO05D006920 8.9e-31 137.1 73 89.0
Haze_05354 Corylus avellana HOM05D005310 ORTHO05D006920 4.4e-30 134.8 77 75.3
SalBow8G4237 Salvia bowleyana HOM05D005310 ORTHO05D006920 7.0e-28 127.5 71 81.7
Hund04397 Selenicereus undatus HOM05D005310 ORTHO05D006920 2.3e-26 122.5 71 80.3
DCAR_027984 Daucus carota HOM05D005310 ORTHO05D006920 6.6e-26 120.9 69 81.2
Cre05.g244800 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D006920 8.6e-26 120.6 104 54.8
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 5.2e-23 111.3 103 51.5
Actinidia07651 Actinidia chinensis HOM05D005310 ORTHO05D006920 7.0e-20 100.9 118 52.5
Prupe.6G055000 Prunus persica HOM05D005310 ORTHO05D006920 1.5e-17 93.2 62 74.2
MCO10G294 Micromonas commoda HOM05D005310 ORTHO05D006920 4.4e-14 81.6 80 43.8
Cre01.g027850 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D044290 1.7e-13 79.7 101 38.6
CBR_g23069 Chara braunii HOM05D005310 ORTHO05D006920 7.8e-11 70.9 80 37.5
TAR627G0081 Trochodendron aralioides HOM05D005310 ORTHO05D006920 6.6e-10 67.8 36 88.9
CBR_g48496 Chara braunii HOM05D005310 ORTHO05D006920 1.1e-09 67.0 55 49.1
Cre06.g274650 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D006920 4.3e-09 65.1 95 37.9
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 1.2e-06 57.0 101 32.7
Prupe.8G174100 Prunus persica HOM05D005310 ORTHO05D006920 1.2e-06 57.0 30 86.7
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 1.2e-06 57.0 101 29.7
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 3.4e-06 55.5 101 30.7
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 3.4e-06 55.5 101 30.7
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 3.4e-06 55.5 101 30.7
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 4.4e-06 55.1 101 28.7
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 5.8e-06 54.7 101 30.7
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 5.8e-06 54.7 99 30.3
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 9.9e-06 53.9 99 28.3
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 9.9e-06 53.9 99 28.3


User provided reference genes

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