Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 1.3e-34 149.1 68 100.0
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 5.5e-30 133.7 67 89.6
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.5e-30 133.7 67 89.6
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 5.5e-30 133.7 67 89.6
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 7.2e-30 133.3 66 89.4
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 7.2e-30 133.3 66 89.4
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.2e-29 132.5 67 88.1
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.2e-29 132.5 67 88.1
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 3.6e-29 131.0 67 86.6
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.0e-28 129.4 67 86.6
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.0e-28 129.4 66 86.4
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 3.0e-28 127.9 67 85.1
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 3.0e-28 127.9 67 85.1
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 3.0e-28 127.9 67 86.6
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 3.9e-28 127.5 67 85.1
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.9e-28 127.5 67 86.6
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.9e-28 127.5 67 86.6
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.5e-27 125.6 67 85.1
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 3.3e-27 124.4 66 84.8
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 4.4e-27 124.0 67 83.6
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 4.4e-27 124.0 66 83.3
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 5.7e-27 123.6 66 83.3
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 5.7e-27 123.6 67 83.6
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 7.4e-27 123.2 67 83.6
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 7.4e-27 123.2 67 83.6
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 7.4e-27 123.2 67 83.6
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 7.4e-27 123.2 66 83.3
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 7.4e-27 123.2 67 83.6
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 7.4e-27 123.2 67 83.6
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 7.4e-27 123.2 67 83.6
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 1.3e-26 122.5 66 84.8
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.3e-26 122.5 63 85.7
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 1.3e-26 122.5 67 82.1
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 1.3e-26 122.5 67 82.1
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 1.7e-26 122.1 64 84.4
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.7e-26 122.1 66 81.8
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 2.2e-26 121.7 66 81.8
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 2.2e-26 121.7 65 81.5
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 2.8e-26 121.3 64 84.4
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.8e-26 121.3 67 80.6
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.8e-26 121.3 67 80.6
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 3.7e-26 120.9 67 77.6
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 4.8e-26 120.6 66 81.8
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 4.8e-26 120.6 67 80.6
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 4.8e-26 120.6 66 83.3
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 6.3e-26 120.2 66 83.3
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 6.3e-26 120.2 67 80.6
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 6.3e-26 120.2 67 80.6
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 8.2e-26 119.8 65 81.5
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 8.2e-26 119.8 67 80.6
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.1e-25 119.4 66 78.8
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 1.4e-25 119.0 66 81.8
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 1.4e-25 119.0 66 81.8
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.4e-25 119.0 68 82.4
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.8e-25 118.6 66 78.8
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.8e-25 118.6 66 78.8
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 1.8e-25 118.6 66 81.8
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.4e-25 118.2 66 78.8
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.4e-25 118.2 66 77.3
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 4.1e-25 117.5 66 80.3
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.3e-25 117.1 66 80.3
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.3e-25 117.1 66 80.3
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 5.3e-25 117.1 66 80.3
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 7.0e-25 116.7 68 80.9
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 9.1e-25 116.3 66 78.8
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 1.2e-24 115.9 66 78.8
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 1.2e-24 115.9 66 78.8
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.6e-24 115.5 66 80.3
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.6e-24 115.5 67 80.6
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 2.0e-24 115.2 67 77.6
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 2.0e-24 115.2 66 77.3
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 2.0e-24 115.2 64 81.2
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 2.6e-24 114.8 66 80.3
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 3.5e-24 114.4 66 78.8
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 4.5e-24 114.0 66 78.8
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 4.5e-24 114.0 66 78.8
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.5e-24 114.0 64 79.7
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.5e-24 114.0 66 77.3
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 7.7e-24 113.2 66 77.3
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 7.7e-24 113.2 67 77.6
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 7.7e-24 113.2 66 77.3
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.0e-23 112.8 66 74.2
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.0e-23 112.8 67 74.6
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.3e-23 112.5 67 79.1
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.7e-23 112.1 65 76.9
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 1.7e-23 112.1 66 75.8
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 1.7e-23 112.1 66 75.8
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 1.7e-23 112.1 66 75.8
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 1.7e-23 112.1 66 77.3
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.7e-23 112.1 67 76.1
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.2e-23 111.7 66 77.3
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.2e-23 111.7 66 77.3
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 2.2e-23 111.7 66 77.3
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.2e-23 111.7 66 77.3
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 2.2e-23 111.7 66 77.3
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 2.2e-23 111.7 66 77.3
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 3.8e-23 110.9 66 77.3
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 3.8e-23 110.9 66 75.8
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 3.8e-23 110.9 66 75.8
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 5.0e-23 110.5 66 77.3
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 5.0e-23 110.5 66 77.3
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 6.5e-23 110.2 66 75.8
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 8.5e-23 109.8 66 74.2
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 8.5e-23 109.8 66 75.8
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.1e-22 109.4 64 75.0
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.5e-22 108.2 67 74.6
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 5.5e-22 107.1 80 65.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 1.2e-21 105.9 67 74.6
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 2.7e-21 104.8 67 70.1
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 2.3e-20 101.7 67 67.2
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 8.8e-20 99.8 67 65.7
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.2e-19 99.4 65 66.2
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.5e-19 99.0 67 67.2
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 3.4e-19 97.8 65 61.5
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 7.5e-19 96.7 48 87.5
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 6.3e-18 93.6 65 67.7
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 2.4e-17 91.7 67 61.2
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.2e-16 89.4 47 83.0
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 4.5e-16 87.4 48 81.2
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 4.5e-16 87.4 53 77.4
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 5.9e-16 87.0 48 81.2
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 5.9e-16 87.0 48 79.2
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.0e-15 86.3 48 79.2
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 2.2e-15 85.1 47 80.9
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 2.2e-15 85.1 47 80.9
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 5.0e-15 84.0 51 74.5
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.0e-15 84.0 48 75.0
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.0e-15 84.0 48 75.0
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 8.5e-15 83.2 48 77.1
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 8.5e-15 83.2 47 78.7
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.1e-14 82.8 80 53.8
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 3.2e-14 81.3 47 76.6
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 9.4e-14 79.7 52 69.2
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 9.4e-14 79.7 52 69.2
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 9.4e-14 79.7 47 76.6
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 4.0e-12 74.3 47 72.3
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.5e-11 72.4 48 68.8
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.4e-09 65.9 48 54.2
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 1.6e-08 62.4 37 75.7
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 6.6e-07 57.0 39 64.1
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.9e-06 55.5 67 46.3


User provided reference genes

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