Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0108781 Rosa chinensis HOM05D002512 ORTHO05D035506 2.6e-50 201.8 107 100.0
RcHm_v2.0_Chr3g0495071 Rosa chinensis HOM05D002512 ORTHO05D002660 7.1e-40 167.2 114 80.7
MD07G1024500 Malus domestica HOM05D002512 ORTHO05D002660 4.2e-24 114.8 111 62.2
FAN01G0945 Fragaria x ananassa HOM05D002512 ORTHO05D002660 5.4e-24 114.4 109 64.2
FAN01G1015 Fragaria x ananassa HOM05D002512 ORTHO05D002660 5.4e-24 114.4 109 64.2
FAN10G3807 Fragaria x ananassa HOM05D002512 ORTHO05D002660 1.2e-23 113.2 109 64.2
MD02G1300300 Malus domestica HOM05D002512 ORTHO05D002660 1.2e-23 113.2 105 63.8
RcHm_v2.0_Chr1g0318441 Rosa chinensis HOM05D002512 ORTHO05D002660 7.4e-21 104.0 108 62.0
CANSAT80G1785 Cannabis sativa HOM05D002512 ORTHO05D002660 1.3e-17 93.2 104 56.7
Thecc.01G406400 Theobroma cacao HOM05D002512 ORTHO05D002660 2.9e-17 92.0 104 54.8
FAN03G2673 Fragaria x ananassa HOM05D002512 ORTHO05D002660 2.7e-15 85.5 111 53.2
Duzib138G1858 Durio zibethinus HOM05D002512 ORTHO05D002660 3.5e-15 85.1 104 51.0
FAN06G4412 Fragaria x ananassa HOM05D002512 ORTHO05D002660 3.5e-15 85.1 116 53.4
Prupe.2G024300 Prunus persica HOM05D002512 ORTHO05D002660 1.0e-14 83.6 104 50.0
SGA_v2.0_scaffold4G02485 Striga asiatica HOM05D002512 ORTHO05D002660 8.7e-14 80.5 107 48.6
CiPaw.14G003200 Carya illinoinensis HOM05D002512 ORTHO05D002660 2.5e-13 79.0 103 50.5
TAR623G0444 Trochodendron aralioides HOM05D002512 ORTHO05D002660 7.4e-13 77.4 104 44.2
Manes.07G010600 Manihot esculenta HOM05D002512 ORTHO05D002660 1.3e-12 76.6 104 48.1
CiPaw.13G007900 Carya illinoinensis HOM05D002512 ORTHO05D002660 3.7e-12 75.1 103 46.6
Atru.chr11.2513 Acer truncatum HOM05D002512 ORTHO05D002660 6.2e-12 74.3 106 47.2
Migut.B01265 Erythranthe guttata HOM05D002512 ORTHO05D002660 3.1e-11 72.0 104 45.2
Sed0013128 Sechium edule HOM05D002512 ORTHO05D002660 4.0e-11 71.6 105 46.7
Ah.16g100660 Amaranthus hybridus HOM05D002512 ORTHO05D002660 6.9e-11 70.9 115 44.3
Gohir.D08G163400 Gossypium hirsutum HOM05D002512 ORTHO05D002660 1.2e-10 70.1 104 47.1
GSVIVG01032213001 Vitis vinifera HOM05D002512 ORTHO05D002660 1.2e-10 70.1 106 44.3
PGR031G2578 Punica granatum HOM05D002512 ORTHO05D002660 1.5e-10 69.7 105 45.7
QL04p010027 Quercus lobata HOM05D002512 ORTHO05D002660 1.5e-10 69.7 112 46.4
Peaxi162Scf01270g00119 Petunia axillaris HOM05D002512 ORTHO05D002660 2.0e-10 69.3 103 45.6
SalBow5G3219 Salvia bowleyana HOM05D002512 ORTHO05D002660 2.0e-10 69.3 108 45.4
Sc10g0000350 Simmondsia chinensis HOM05D002512 ORTHO05D002660 2.0e-10 69.3 105 42.9
EL10Ac2g04372 Beta vulgaris HOM05D002512 ORTHO05D002660 4.5e-10 68.2 109 45.0
Potri.001G261900 Populus trichocarpa HOM05D002512 ORTHO05D002660 4.5e-10 68.2 104 44.2
THA.LOC104819101 Tarenaya hassleriana HOM05D002512 ORTHO05D002660 4.5e-10 68.2 108 46.3
Nitab4.5_0001244g0080 Nicotiana tabacum HOM05D002512 ORTHO05D002660 1.3e-09 66.6 103 45.6
Cpa.g.sc125.48 Carica papaya HOM05D002512 ORTHO05D002660 1.7e-09 66.2 106 41.5
Oeu049475.1 Olea europaea HOM05D002512 ORTHO05D002660 1.7e-09 66.2 139 37.4
arahy.Tifrunner.gnm1.ann1.0ZJB3J Arachis hypogaea HOM05D002512 ORTHO05D002660 2.2e-09 65.9 102 48.0
arahy.Tifrunner.gnm1.ann1.LSN1P0 Arachis hypogaea HOM05D002512 ORTHO05D002660 2.2e-09 65.9 102 46.1
DCAR_003227 Daucus carota HOM05D002512 ORTHO05D002660 2.9e-09 65.5 113 43.4
Nn7g36333 Nelumbo nucifera HOM05D002512 ORTHO05D002660 3.8e-09 65.1 102 42.2
Haze_03144 Corylus avellana HOM05D002512 ORTHO05D002660 6.5e-09 64.3 113 39.8
Haze_03147 Corylus avellana HOM05D002512 ORTHO05D002660 6.5e-09 64.3 113 39.8
Lalb_Chr04g0263841 Lupinus albus HOM05D002512 ORTHO05D002660 6.5e-09 64.3 101 46.5
Ciclev10031090m.g Citrus clementina HOM05D002512 ORTHO05D002660 1.1e-08 63.5 115 41.7
VMungo1080G0592 Vigna mungo HOM05D002512 ORTHO05D002660 1.1e-08 63.5 103 41.7
TWI09G0383 Tripterygium wilfordii HOM05D002512 ORTHO05D002660 1.4e-08 63.2 108 43.5
Rhsim01G0126000 Rhododendron simsii HOM05D002512 ORTHO05D002660 1.9e-08 62.8 103 40.8
Sp6g30260 Schrenkiella parvula HOM05D002512 ORTHO05D002660 1.9e-08 62.8 118 42.4
Hund25523 Selenicereus undatus HOM05D002512 ORTHO05D002660 1.9e-08 62.8 108 43.5
CsaV3_3G031920 Cucumis sativus L. HOM05D002512 ORTHO05D002660 2.5e-08 62.4 105 41.9
PSO339G2823 Papaver somniferum HOM05D002512 ORTHO05D002660 2.5e-08 62.4 103 42.7
PSO384G4049 Papaver somniferum HOM05D002512 ORTHO05D002660 2.5e-08 62.4 103 42.7
CSS0045747 Camellia sinensis var. sinensis HOM05D002512 ORTHO05D002660 3.2e-08 62.0 104 43.3
ClCG10G012160 Citrullus lanatus HOM05D002512 ORTHO05D002660 3.2e-08 62.0 105 41.9
FvH4_5g01450 Fragaria vesca HOM05D054569 ORTHO05D035506 3.2e-08 62.0 37 81.1
FAN18G1433 Fragaria x ananassa HOM05D054569 ORTHO05D035506 3.2e-08 62.0 37 81.1
Gohir.A08G142400 Gossypium hirsutum HOM05D002512 ORTHO05D002660 5.5e-08 61.2 104 43.3
Gorai.004G170200 Gossypium raimondii HOM05D002512 ORTHO05D002660 5.5e-08 61.2 104 43.3
Potri.009G056700 Populus trichocarpa HOM05D002512 ORTHO05D002660 5.5e-08 61.2 115 41.7
PGSC0003DMG400006835 Solanum tuberosum HOM05D002512 ORTHO05D002660 9.3e-08 60.5 132 36.4
Aqoxy1G00326 Aquilegia oxysepala HOM05D002512 ORTHO05D002660 1.2e-07 60.1 102 40.2
Oeu047604.1 Olea europaea HOM05D002512 ORTHO05D002660 1.6e-07 59.7 103 41.7
Carub.0006s1194 Capsella rubella HOM05D002512 ORTHO05D002660 2.7e-07 58.9 124 41.9
Thhalv10013102m.g Eutrema salsugineum HOM05D002512 ORTHO05D002660 3.5e-07 58.5 118 39.8
Nn2g15196 Nelumbo nucifera HOM05D002512 ORTHO05D002660 4.6e-07 58.2 102 39.2
Oeu027369.1 Olea europaea HOM05D002512 ORTHO05D002660 4.6e-07 58.2 103 41.7
MELO3C023999.2 Cucumis melo HOM05D002512 ORTHO05D002660 6.0e-07 57.8 104 39.4
Actinidia21537 Actinidia chinensis HOM05D002512 ORTHO05D002660 7.9e-07 57.4 103 39.8
arahy.Tifrunner.gnm1.ann1.0I1Q5M Arachis hypogaea HOM05D002512 ORTHO05D002660 7.9e-07 57.4 102 41.2
Sopen01g034820 Solanum pennellii HOM05D002512 ORTHO05D002660 7.9e-07 57.4 127 35.4
Dinv07432 Davidia involucrata HOM05D002512 ORTHO05D002660 1.0e-06 57.0 103 38.8
unitig_8.g3867 Utricularia gibba HOM05D002512 ORTHO05D002660 1.3e-06 56.6 104 39.4
Eucgr.G03321 Eucalyptus grandis HOM05D002512 ORTHO05D002660 1.8e-06 56.2 104 39.4
Lj9A641T63 Lonicera japonica HOM05D002512 ORTHO05D002660 1.8e-06 56.2 103 38.8
Nitab4.5_0008942g0010 Nicotiana tabacum HOM05D002512 ORTHO05D002660 2.3e-06 55.8 103 39.8
vmacro21139 Vaccinium macrocarpon HOM05D002512 ORTHO05D002660 2.3e-06 55.8 107 37.4
AL6G24380 Arabidopsis lyrata HOM05D002512 ORTHO05D002660 6.7e-06 54.3 115 40.9
Solyc01g087890.3 Solanum lycopersicum HOM05D002512 ORTHO05D002660 6.7e-06 54.3 128 33.6


User provided reference genes

Program Settings