Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 8.7e-148 526.9 264 100.0
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 1.6e-133 479.6 264 93.6
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.8e-128 461.1 255 93.3
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.4e-127 457.2 264 89.4
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 1.6e-117 426.4 266 83.8
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.0e-115 419.5 264 82.2
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 1.8e-113 412.9 264 81.1
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.8e-113 412.9 264 81.1
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 1.9e-110 402.9 264 80.3
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 2.7e-109 399.1 268 78.4
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.0e-100 370.5 264 72.0
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 1.8e-100 369.8 262 72.5
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 4.4e-99 365.2 248 76.2
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 2.2e-98 362.8 267 71.2
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.7e-98 362.1 264 74.2
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 2.4e-97 359.4 261 70.5
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 5.3e-97 358.2 274 67.5
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 1.6e-96 356.7 263 71.1
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.6e-96 356.7 268 71.6
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.0e-96 356.3 264 70.8
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 3.5e-96 355.5 257 70.4
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 2.2e-95 352.8 252 69.4
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 5.0e-95 351.7 252 71.0
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 6.5e-95 351.3 262 72.9
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 6.5e-95 351.3 271 67.2
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 6.5e-95 351.3 258 69.8
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 1.9e-94 349.7 250 70.4
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 1.9e-94 349.7 251 70.5
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 3.2e-94 349.0 264 69.7
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 4.2e-94 348.6 253 71.9
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.2e-93 347.1 257 71.2
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.6e-93 346.7 270 69.3
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 1.6e-93 346.7 233 73.4
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 2.1e-93 346.3 254 69.3
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 2.1e-93 346.3 271 67.9
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 2.7e-93 345.9 199 83.9
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 3.6e-93 345.5 245 71.4
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 3.6e-93 345.5 268 70.9
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 4.7e-93 345.1 243 71.2
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 4.7e-93 345.1 257 69.6
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.1e-93 344.7 228 77.2
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 8.0e-93 344.4 271 67.9
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.4e-92 343.6 248 68.5
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.8e-92 343.2 249 68.3
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.8e-92 343.2 249 68.7
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.8e-92 343.2 236 72.5
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 2.3e-92 342.8 258 68.2
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 3.0e-92 342.4 252 70.6
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 6.8e-92 341.3 249 69.5
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 6.8e-92 341.3 255 68.6
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 8.8e-92 340.9 271 64.9
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 8.8e-92 340.9 249 67.9
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 1.2e-91 340.5 270 66.7
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 1.5e-91 340.1 251 71.3
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 2.0e-91 339.7 275 66.5
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.0e-91 339.7 268 68.3
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 2.6e-91 339.3 243 70.0
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 3.4e-91 339.0 254 69.7
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 7.5e-91 337.8 253 68.0
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 7.5e-91 337.8 247 72.5
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 1.3e-90 337.0 224 72.8
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 2.8e-90 335.9 257 68.1
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 2.8e-90 335.9 267 65.5
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 4.8e-90 335.1 240 69.2
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 3.1e-89 332.4 248 69.4
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 3.1e-89 332.4 252 67.1
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 4.1e-89 332.0 204 75.0
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 4.1e-89 332.0 248 68.1
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.0e-88 329.7 238 69.7
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.7e-88 329.3 264 64.4
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 4.5e-88 328.6 199 77.9
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 4.5e-88 328.6 257 66.1
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.7e-87 326.6 259 64.1
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 2.9e-87 325.9 264 65.9
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 1.1e-86 323.9 266 62.8
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.5e-86 323.6 198 77.8
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.9e-86 323.2 265 63.4
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.9e-86 323.2 253 65.6
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 2.5e-86 322.8 245 69.0
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 5.5e-86 321.6 274 61.3
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 3.6e-85 318.9 253 64.0
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 4.7e-85 318.5 267 61.8
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 6.1e-85 318.2 245 66.9
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.8e-84 316.6 263 62.4
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 2.3e-84 316.2 202 78.7
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 4.0e-84 315.5 208 75.0
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 5.2e-84 315.1 261 62.1
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 6.8e-84 314.7 253 63.6
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 6.8e-84 314.7 249 63.9
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.2e-83 313.9 211 71.1
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 1.5e-83 313.5 247 67.2
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 2.6e-83 312.8 256 62.9
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 3.4e-83 312.4 248 63.7
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 7.5e-83 311.2 260 61.5
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 9.8e-83 310.8 192 76.0
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.3e-82 310.5 257 61.5
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.3e-82 310.5 257 61.5
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.7e-82 310.1 205 74.1
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 2.2e-82 309.7 252 62.7
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 2.2e-82 309.7 252 63.1
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 2.2e-82 309.7 200 76.5
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 2.2e-82 309.7 238 68.9
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 6.3e-82 308.1 192 76.0
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.1e-81 305.4 160 89.4
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.7e-80 302.8 193 73.6
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 1.3e-79 300.4 263 61.2
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 2.3e-79 299.7 264 62.1
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.2e-77 293.9 159 86.2
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 4.7e-77 292.0 264 61.7
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.8e-76 290.0 262 59.5
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 3.0e-76 289.3 157 85.4
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 2.0e-75 286.6 167 77.2
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 3.7e-74 282.3 188 71.8
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 7.0e-73 278.1 245 57.6
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 3.0e-71 272.7 222 65.8
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 6.6e-71 271.6 266 59.4
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 2.8e-69 266.2 187 65.2
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.3e-66 257.3 257 57.2
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 4.3e-62 242.3 256 55.9
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 3.1e-60 236.1 149 76.5
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.1e-57 227.6 233 48.5
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 3.9e-55 219.2 187 61.0
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 7.3e-54 214.9 238 46.2
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 1.3e-50 204.1 129 70.5
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.4e-49 199.9 152 70.4
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 6.2e-45 185.3 102 84.3
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.4e-44 183.3 103 81.6
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 9.6e-38 161.4 108 67.6
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.1e-36 157.9 198 47.5
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.4e-36 156.8 162 60.5
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 7.6e-35 151.8 99 71.7
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 2.2e-34 150.2 90 76.7
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.1e-31 139.0 101 69.3
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 9.6e-22 108.2 160 36.9
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 4.8e-21 105.9 246 30.9
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 6.2e-21 105.5 151 45.0
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 8.1e-21 105.1 208 30.8
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.5e-19 100.9 69 75.4
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.4e-17 94.4 176 32.4
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 4.6e-16 89.4 53 79.2
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 3.9e-15 86.3 132 37.1
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.1e-14 84.7 216 28.7
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 1.5e-14 84.3 149 32.9
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.6e-13 80.9 183 37.2
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 2.8e-13 80.1 194 28.4
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 9.0e-12 75.1 80 50.0
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 3.4e-11 73.2 138 34.1
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.9e-10 70.1 136 33.8
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 3.8e-10 69.7 253 26.9
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.2e-09 66.6 120 41.7
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 1.6e-08 64.3 37 78.4
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 6.1e-08 62.4 144 33.3
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.9e-06 57.4 99 32.3
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.7e-06 55.8 118 42.4


User provided reference genes

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