Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 2.1e-97 359.0 177 100.0
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 3.1e-85 318.5 179 89.4
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.0e-85 317.4 179 88.8
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.7e-84 313.9 178 87.1
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.7e-84 313.9 178 87.1
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.3e-82 308.5 178 86.0
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 2.0e-39 166.4 177 53.1
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 3.0e-27 125.9 187 44.4
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 6.7e-27 124.8 182 42.9
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 8.7e-27 124.4 173 45.1
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 1.5e-26 123.6 171 43.3
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.3e-25 120.6 181 39.8
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.6e-25 120.2 182 39.6
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 2.8e-25 119.4 177 42.4
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 2.8e-25 119.4 177 41.8
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 3.7e-25 119.0 171 43.9
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 1.1e-24 117.5 181 43.1
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 1.8e-24 116.7 180 45.6
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 1.5e-23 113.6 176 42.0
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 4.5e-23 112.1 175 41.7
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 2.2e-22 109.8 172 41.9
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 2.2e-22 109.8 181 36.5
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.8e-22 109.0 167 40.7
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.4e-21 107.1 171 42.1
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.4e-21 107.1 173 42.8
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.5e-21 106.3 181 38.1
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 7.1e-21 104.8 170 37.6
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 7.1e-21 104.8 173 38.7
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.7e-20 102.8 179 39.1
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 2.7e-20 102.8 174 40.2
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 6.0e-20 101.7 180 42.8
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.0e-19 100.9 178 44.4
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 1.0e-19 100.9 186 38.2
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 2.3e-19 99.8 167 41.3
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.1e-19 98.6 184 40.2
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.1e-19 98.6 184 40.2
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 5.1e-19 98.6 178 38.2
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 1.5e-18 97.1 176 37.5
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.5e-18 97.1 165 38.8
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.5e-18 96.3 177 35.6
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.7e-18 95.1 184 39.7
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 7.4e-18 94.7 177 39.5
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 9.6e-18 94.4 176 33.5
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.3e-17 94.0 182 37.4
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.8e-17 92.8 173 37.6
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 2.8e-17 92.8 167 37.1
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.7e-17 92.4 171 38.0
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.1e-16 90.9 166 36.7
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 1.8e-16 90.1 179 36.9
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 2.4e-16 89.7 173 34.1
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 3.1e-16 89.4 175 35.4
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 3.1e-16 89.4 169 38.5
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.9e-16 88.2 169 33.7
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.0e-16 87.8 169 33.7
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 1.2e-15 87.4 177 33.9
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.5e-15 87.0 173 31.8
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 1.5e-15 87.0 166 38.0
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 2.0e-15 86.7 174 32.2
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 2.0e-15 86.7 162 35.8
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.4e-15 85.9 170 35.9
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 4.5e-15 85.5 178 34.3
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 5.8e-15 85.1 173 34.7
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 7.6e-15 84.7 180 36.7
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.3e-14 84.0 112 43.8
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.3e-14 84.0 167 32.9
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.9e-14 82.8 172 34.9
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 2.9e-14 82.8 167 38.9
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.9e-14 82.8 169 34.3
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 5.0e-14 82.0 159 36.5
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 8.4e-14 81.3 175 33.7
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 1.9e-13 80.1 188 35.1
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 1.9e-13 80.1 202 30.7
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 1.9e-13 80.1 114 43.0
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 3.2e-13 79.3 113 44.2
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 5.5e-13 78.6 174 32.2
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 7.2e-13 78.2 166 34.3
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.2e-12 77.4 162 37.0
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 2.1e-12 76.6 164 35.4
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 2.1e-12 76.6 169 33.7
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.5e-12 75.9 175 32.0
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 3.5e-12 75.9 160 36.2
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 4.6e-12 75.5 166 32.5
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 4.6e-12 75.5 157 35.0
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 6.1e-12 75.1 174 35.1
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 6.1e-12 75.1 177 31.6
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 7.9e-12 74.7 112 39.3
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 1.0e-11 74.3 161 32.3
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 3.0e-11 72.8 152 33.6
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 6.7e-11 71.6 171 32.7
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.1e-10 70.9 171 37.4
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.5e-10 70.5 180 28.9
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 1.5e-10 70.5 166 32.5
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 1.5e-10 70.5 165 32.1
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 1.5e-10 70.5 160 29.4
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 4.3e-10 68.9 182 32.4
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-09 67.4 179 28.5
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 2.8e-09 66.2 127 38.6
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.8e-09 66.2 170 30.0
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.7e-09 65.9 179 28.5
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 4.8e-09 65.5 170 30.6
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 8.2e-09 64.7 158 33.5
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 8.2e-09 64.7 179 28.5
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.8e-08 63.5 166 33.1
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.8e-08 63.5 168 31.5
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 2.4e-08 63.2 146 34.9
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 2.4e-08 63.2 181 34.8
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.4e-08 63.2 181 33.7
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 2.4e-08 63.2 173 28.3
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 4.1e-08 62.4 189 25.9
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 4.1e-08 62.4 171 30.4
FvH4_1g18200 Fragaria vesca HOM05D041506 ORTHO05D046052 5.3e-08 62.0 139 38.1
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 5.3e-08 62.0 179 33.5
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 1.5e-07 60.5 171 31.0
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.5e-07 60.5 185 33.5
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.0e-07 60.1 159 30.2
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 1.3e-06 57.4 169 29.0
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 1.7e-06 57.0 150 30.7
FAN28G2228 Fragaria x ananassa HOM05D041506 ORTHO05D046052 2.2e-06 56.6 137 38.7
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 2.2e-06 56.6 180 28.9
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.9e-06 56.2 159 29.6
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.5e-06 55.1 159 28.3
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 6.5e-06 55.1 175 30.3
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 8.5e-06 54.7 170 28.2
Sed0025721 Sechium edule HOM05D005317 ORTHO05D005146 8.5e-06 54.7 165 34.5


User provided reference genes

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