Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0108711 Rosa chinensis HOM05D000826 ORTHO05D006448 7.2e-22 106.3 52 100.0
RcHm_v2.0_Chr5g0014471 Rosa chinensis HOM05D000826 ORTHO05D006448 6.7e-20 99.8 48 100.0
FvH4_3g05240 Fragaria vesca HOM05D000826 ORTHO05D006448 1.7e-18 95.1 48 93.8
FAN11G2713 Fragaria x ananassa HOM05D000826 ORTHO05D006448 1.7e-18 95.1 48 93.8
MD10G1260100 Malus domestica HOM05D000826 ORTHO05D006448 8.2e-18 92.8 48 89.6
FAN16G3098 Fragaria x ananassa HOM05D000826 ORTHO05D006448 1.8e-17 91.7 48 89.6
FAN21G2333 Fragaria x ananassa HOM05D000826 ORTHO05D006448 1.8e-17 91.7 48 89.6
MD05G1281300 Malus domestica HOM05D000826 ORTHO05D006448 5.9e-16 86.7 48 83.3
QL05p055819 Quercus lobata HOM05D000826 ORTHO05D006448 2.9e-15 84.3 48 79.2
Prupe.4G083300 Prunus persica HOM05D000826 ORTHO05D006448 3.8e-15 84.0 47 87.2
Dinv32232 Davidia involucrata HOM05D000826 ORTHO05D006448 1.5e-14 82.0 48 77.1
Solyc08g048450.4 Solanum lycopersicum HOM05D000826 ORTHO05D006448 7.2e-14 79.7 48 75.0
Sopen08g010730 Solanum pennellii HOM05D000826 ORTHO05D006448 7.2e-14 79.7 48 75.0
PGSC0003DMG400029872 Solanum tuberosum HOM05D000826 ORTHO05D006448 7.2e-14 79.7 48 75.0
Nitab4.5_0006038g0020 Nicotiana tabacum HOM05D000826 ORTHO05D006448 1.6e-13 78.6 48 75.0
CiPaw.09G121700 Carya illinoinensis HOM05D000826 ORTHO05D006448 2.7e-13 77.8 48 72.9
CiPaw.10G090200 Carya illinoinensis HOM05D000826 ORTHO05D006448 2.7e-13 77.8 48 75.0
Dinv21557 Davidia involucrata HOM05D000826 ORTHO05D006448 3.6e-13 77.4 47 74.5
MELO3C002752.2 Cucumis melo HOM05D000826 ORTHO05D006448 8.0e-13 76.3 48 72.9
CsaV3_1G004640 Cucumis sativus L. HOM05D000826 ORTHO05D006448 1.0e-12 75.9 48 72.9
MSTRG.7501 Avicennia marina HOM05D000826 ORTHO05D006448 1.8e-12 75.1 48 70.8
QL05p057206 Quercus lobata HOM05D000826 ORTHO05D006448 1.8e-12 75.1 43 79.1
Nitab4.5_0005094g0040 Nicotiana tabacum HOM05D000826 ORTHO05D006448 2.3e-12 74.7 48 72.9
Cfa000923 Carpinus fangiana HOM05D000826 ORTHO05D006448 3.0e-12 74.3 48 70.8
CSS0044711 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 5.2e-12 73.6 48 68.8
Cc00_g12600 Coffea canephora HOM05D000826 ORTHO05D006448 6.8e-12 73.2 48 68.8
DCAR_007881 Daucus carota HOM05D000826 ORTHO05D006448 6.8e-12 73.2 48 68.8
Manes.15G123600 Manihot esculenta HOM05D000826 ORTHO05D006448 6.8e-12 73.2 48 68.8
Nn3g20410 Nelumbo nucifera HOM05D000826 ORTHO05D006448 8.8e-12 72.8 48 64.6
Sc05g0006080 Simmondsia chinensis HOM05D000826 ORTHO05D006448 1.5e-11 72.0 48 64.6
CSS0028491 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 2.0e-11 71.6 48 66.7
Hma1.2p1_0020F.1_g014180 Hydrangea macrophylla HOM05D000826 ORTHO05D006448 2.0e-11 71.6 46 67.4
Hma1.2p1_0020F.1_g014190 Hydrangea macrophylla HOM05D000826 ORTHO05D006448 2.0e-11 71.6 46 67.4
Sed0003877 Sechium edule HOM05D000826 ORTHO05D006448 2.0e-11 71.6 48 68.8
SGA_v2.0_scaffold1G00195 Striga asiatica HOM05D000826 ORTHO05D006448 2.0e-11 71.6 49 73.5
Atru.chr10.1167 Acer truncatum HOM05D000826 ORTHO05D006448 2.6e-11 71.2 48 66.7
ClCG03G006680 Citrullus lanatus HOM05D000826 ORTHO05D006448 2.6e-11 71.2 49 71.4
Oeu040098.1 Olea europaea HOM05D000826 ORTHO05D006448 2.6e-11 71.2 48 66.7
Peaxi162Scf00317g00023 Petunia axillaris HOM05D000826 ORTHO05D006448 2.6e-11 71.2 44 75.0
TAR627G0038 Trochodendron aralioides HOM05D000826 ORTHO05D006448 2.6e-11 71.2 50 66.0
Sc05g0006070 Simmondsia chinensis HOM05D000826 ORTHO05D006448 3.4e-11 70.9 48 64.6
Manes.17G072300 Manihot esculenta HOM05D000826 ORTHO05D006448 5.7e-11 70.1 47 72.3
Ah.09g232510 Amaranthus hybridus HOM05D000826 ORTHO05D006448 7.5e-11 69.7 48 60.4
CSS0017067 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 7.5e-11 69.7 48 64.6
AUR62002697 Chenopodium quinoa HOM05D000826 ORTHO05D006448 9.8e-11 69.3 47 61.7
MBI02_g03072_MAGBIO Magnolia biondii HOM05D000826 ORTHO05D006448 9.8e-11 69.3 48 64.6
TWI09G1644 Tripterygium wilfordii HOM05D000826 ORTHO05D006448 9.8e-11 69.3 48 64.6
Actinidia39586 Actinidia chinensis HOM05D000826 ORTHO05D006448 1.7e-10 68.6 48 70.8
COL.COLO4_31038 Corchorus olitorius HOM05D000826 ORTHO05D006448 2.8e-10 67.8 48 68.8
vmacro03342 Vaccinium macrocarpon HOM05D000826 ORTHO05D006448 2.8e-10 67.8 47 63.8
EL10Ac8g19645 Beta vulgaris HOM05D000826 ORTHO05D006448 3.7e-10 67.4 48 58.3
ECA234G1332 Erigeron canadensis HOM05D000826 ORTHO05D006448 3.7e-10 67.4 48 62.5
HanXRQChr03g0090071 Helianthus annuus HOM05D000826 ORTHO05D006448 3.7e-10 67.4 48 62.5
GSVIVG01021525001 Vitis vinifera HOM05D000826 ORTHO05D006448 3.7e-10 67.4 47 61.7
Duzib160G0889 Durio zibethinus HOM05D000826 ORTHO05D006448 6.3e-10 66.6 48 68.8
SalBow8G2423 Salvia bowleyana HOM05D000826 ORTHO05D006448 6.3e-10 66.6 52 65.4
Glyma.05G141900 Glycine max HOM05D000826 ORTHO05D006448 8.3e-10 66.2 48 60.4
Lj2A320T45 Lonicera japonica HOM05D000826 ORTHO05D006448 8.3e-10 66.2 49 61.2
PSO675G8347 Papaver somniferum HOM05D000826 ORTHO05D006448 1.1e-09 65.9 46 67.4
VMungo0251G0373 Vigna mungo HOM05D000826 ORTHO05D006448 1.1e-09 65.9 48 58.3
Thecc.06G147800 Theobroma cacao HOM05D000826 ORTHO05D006448 1.4e-09 65.5 48 66.7
CSS0034369 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 1.8e-09 65.1 43 67.4
Migut.M00893 Erythranthe guttata HOM05D000826 ORTHO05D006448 2.4e-09 64.7 49 63.3
Gohir.A06G138700 Gossypium hirsutum HOM05D000826 ORTHO05D006448 3.1e-09 64.3 48 64.6
Gohir.D06G143500 Gossypium hirsutum HOM05D000826 ORTHO05D006448 3.1e-09 64.3 48 64.6
Gorai.010G167200 Gossypium raimondii HOM05D000826 ORTHO05D006448 3.1e-09 64.3 48 64.6
Rhsim13G0115600 Rhododendron simsii HOM05D000826 ORTHO05D006448 3.1e-09 64.3 47 61.7
CDE12G0391 Ceratophyllum demersum HOM05D000826 ORTHO05D006448 4.1e-09 63.9 48 58.3
Eucgr.D00287 Eucalyptus grandis HOM05D000826 ORTHO05D006448 4.1e-09 63.9 48 66.7
Glyma.08G097800 Glycine max HOM05D000826 ORTHO05D006448 4.1e-09 63.9 48 58.3
Aqoxy1G01679 Aquilegia oxysepala HOM05D000826 ORTHO05D006448 7.0e-09 63.2 48 54.2
Lalb_Chr18g0054071 Lupinus albus HOM05D000826 ORTHO05D006448 7.0e-09 63.2 48 62.5
PGR083G1867 Punica granatum HOM05D000826 ORTHO05D006448 1.2e-08 62.4 48 54.2
Sabra11G0065900 Salix brachista HOM05D000826 ORTHO05D006448 2.0e-08 61.6 47 66.0
Sed0026801 Sechium edule HOM05D000826 ORTHO05D006448 2.0e-08 61.6 50 62.0
arahy.Tifrunner.gnm1.ann1.ATM76I Arachis hypogaea HOM05D000826 ORTHO05D006448 4.5e-08 60.5 51 58.8
Cpa.g.sc17.2 Carica papaya HOM05D000826 ORTHO05D006448 7.7e-08 59.7 47 55.3
CDE01G0123 Ceratophyllum demersum HOM05D000826 ORTHO05D006448 7.7e-08 59.7 48 54.2
Os03g0643300 Oryza sativa ssp. japonica HOM05D000826 ORTHO05D006448 7.7e-08 59.7 48 58.3
Hund21539 Selenicereus undatus HOM05D000826 ORTHO05D006448 1.0e-07 59.3 48 54.2
arahy.Tifrunner.gnm1.ann1.F3DNME Arachis hypogaea HOM05D000826 ORTHO05D006448 1.3e-07 58.9 51 56.9
arahy.Tifrunner.gnm1.ann1.Z6DGE6 Arachis hypogaea HOM05D000826 ORTHO05D006448 1.3e-07 58.9 51 56.9
CANSAT35G1538 Cannabis sativa HOM05D000826 ORTHO05D006448 1.3e-07 58.9 51 56.9
Ciclev10015647m.g Citrus clementina HOM05D000826 ORTHO05D006448 1.7e-07 58.5 48 62.5
Lsat_1_v5_gn_4_29681 Lactuca sativa HOM05D000826 ORTHO05D006448 3.8e-07 57.4 47 55.3
Zm00001eb050460 Zea mays HOM05D000826 ORTHO05D006448 6.5e-07 56.6 52 57.7
Potri.011G082800 Populus trichocarpa HOM05D000826 ORTHO05D006448 1.1e-06 55.8 46 60.9
CAN.G42.14 Capsicum annuum HOM05D000826 ORTHO05D006448 1.5e-06 55.5 48 54.2
THA.LOC104798396 Tarenaya hassleriana HOM05D000826 ORTHO05D006448 1.5e-06 55.5 49 57.1
TPR.G13303 Trifolium pratense HOM05D000826 ORTHO05D006448 2.5e-06 54.7 49 53.1
Aa31LG9G6730 Aethionema arabicum HOM05D000826 ORTHO05D006448 5.5e-06 53.5 48 52.1
Lj4g0011938 Lotus japonicus HOM05D000826 ORTHO05D006448 5.5e-06 53.5 49 55.1
Lj4g0015055 Lotus japonicus HOM05D000826 ORTHO05D006448 5.5e-06 53.5 49 55.1
Phvul.002G180400 Phaseolus vulgaris HOM05D000826 ORTHO05D006448 5.5e-06 53.5 48 50.0


User provided reference genes

Program Settings