Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0108641 Rosa chinensis HOM05D003278 ORTHO05D003738 6.0e-36 153.7 79 100.0
RcHm_v2.0_Chr2g0151261 Rosa chinensis HOM05D003278 ORTHO05D003738 8.1e-33 143.3 79 92.4
RcHm_v2.0_Chr2g0176281 Rosa chinensis HOM05D003278 ORTHO05D003738 2.0e-15 85.5 51 78.4
FvH4_6g54110 Fragaria vesca HOM05D003278 ORTHO05D003738 7.6e-15 83.6 51 74.5
FAN02G4589 Fragaria x ananassa HOM05D003278 ORTHO05D003738 7.6e-15 83.6 51 74.5
FAN14G4759 Fragaria x ananassa HOM05D003278 ORTHO05D003738 7.6e-15 83.6 51 74.5
FAN09G0488 Fragaria x ananassa HOM05D003278 ORTHO05D003738 2.2e-14 82.0 51 72.5
FAN05G4705 Fragaria x ananassa HOM05D003278 ORTHO05D003738 4.9e-14 80.9 51 72.5
Prupe.3G311500 Prunus persica HOM05D003278 ORTHO05D003738 1.9e-13 79.0 51 70.6
Cpa.g.sc70.91 Carica papaya HOM05D003278 ORTHO05D003738 7.1e-13 77.0 51 68.6
THA.LOC104822420 Tarenaya hassleriana HOM05D003278 ORTHO05D003738 9.3e-13 76.6 51 64.7
Gohir.A05G334800 Gossypium hirsutum HOM05D003278 ORTHO05D003738 1.2e-12 76.3 51 66.7
Gohir.D04G073700 Gossypium hirsutum HOM05D003278 ORTHO05D003738 1.2e-12 76.3 51 66.7
Gorai.012G083000 Gossypium raimondii HOM05D003278 ORTHO05D003738 1.2e-12 76.3 51 66.7
Duzib147G0947 Durio zibethinus HOM05D003278 ORTHO05D003738 1.6e-12 75.9 51 66.7
Duzib264G0022 Durio zibethinus HOM05D003278 ORTHO05D003738 1.6e-12 75.9 51 66.7
AL6G24690 Arabidopsis lyrata HOM05D003278 ORTHO05D003738 2.1e-12 75.5 49 69.4
Carub.0006s1222 Capsella rubella HOM05D003278 ORTHO05D003738 2.1e-12 75.5 49 69.4
CiPaw.03G003600 Carya illinoinensis HOM05D003278 ORTHO05D003738 2.1e-12 75.5 51 66.7
Ciclev10016821m.g Citrus clementina HOM05D003278 ORTHO05D003738 2.7e-12 75.1 51 64.7
Lj1g0002913 Lotus japonicus HOM05D003278 ORTHO05D003738 2.7e-12 75.1 56 64.3
Gohir.A10G070801 Gossypium hirsutum HOM05D003278 ORTHO05D003738 3.5e-12 74.7 56 60.7
Thecc.04G044100 Theobroma cacao HOM05D003278 ORTHO05D003738 3.5e-12 74.7 51 64.7
MD17G1009400 Malus domestica HOM05D003278 ORTHO05D003738 4.6e-12 74.3 51 68.6
QL02p070117 Quercus lobata HOM05D003278 ORTHO05D003738 4.6e-12 74.3 51 64.7
Sabra16G0205300 Salix brachista HOM05D003278 ORTHO05D003738 4.6e-12 74.3 51 62.7
Duzib187G1801 Durio zibethinus HOM05D003278 ORTHO05D003738 6.0e-12 73.9 51 64.7
Phvul.001G087200 Phaseolus vulgaris HOM05D003278 ORTHO05D003738 6.0e-12 73.9 51 64.7
THA.LOC104821124 Tarenaya hassleriana HOM05D003278 ORTHO05D003738 6.0e-12 73.9 49 67.3
VMungo1383G2948 Vigna mungo HOM05D003278 ORTHO05D003738 6.0e-12 73.9 51 64.7
ClCG05G012820 Citrullus lanatus HOM05D003278 ORTHO05D003738 7.9e-12 73.6 47 72.3
Gohir.D10G080300 Gossypium hirsutum HOM05D003278 ORTHO05D003738 7.9e-12 73.6 56 60.7
Manes.04G091080 Manihot esculenta HOM05D003278 ORTHO05D003738 7.9e-12 73.6 51 62.7
AT5G14030 Arabidopsis thaliana HOM05D003278 ORTHO05D003738 1.0e-11 73.2 49 67.3
Gohir.A07G230900 Gossypium hirsutum HOM05D003278 ORTHO05D003738 1.0e-11 73.2 51 62.7
Potri.017G061900 Populus trichocarpa HOM05D003278 ORTHO05D003738 1.0e-11 73.2 51 60.8
TAR622G0821 Trochodendron aralioides HOM05D003278 ORTHO05D003738 1.0e-11 73.2 49 67.3
Thhalv10014730m.g Eutrema salsugineum HOM05D003278 ORTHO05D003738 1.3e-11 72.8 49 63.3
Glyma.19G099900 Glycine max HOM05D003278 ORTHO05D003738 1.3e-11 72.8 46 71.7
MD09G1005300 Malus domestica HOM05D003278 ORTHO05D003738 1.3e-11 72.8 46 73.9
Sp6g29970 Schrenkiella parvula HOM05D003278 ORTHO05D003738 1.3e-11 72.8 49 63.3
TWI34G2017 Tripterygium wilfordii HOM05D003278 ORTHO05D003738 1.3e-11 72.8 49 69.4
A03p06390 Brassica napus HOM05D003278 ORTHO05D003738 1.8e-11 72.4 49 63.3
A10p24380 Brassica napus HOM05D003278 ORTHO05D003738 1.8e-11 72.4 49 65.3
C09p63090 Brassica napus HOM05D003278 ORTHO05D003738 1.8e-11 72.4 49 65.3
BolC9t59145H Brassica oleracea HOM05D003278 ORTHO05D003738 1.8e-11 72.4 49 65.3
BraA03t09968Z Brassica rapa HOM05D003278 ORTHO05D003738 1.8e-11 72.4 49 63.3
BraA10t44504Z Brassica rapa HOM05D003278 ORTHO05D003738 1.8e-11 72.4 49 65.3
Manes.11G078900 Manihot esculenta HOM05D003278 ORTHO05D003738 1.8e-11 72.4 51 62.7
Psat3g094840 Pisum sativum HOM05D003278 ORTHO05D003738 1.8e-11 72.4 62 58.1
Sed0025572 Sechium edule HOM05D003278 ORTHO05D003738 1.8e-11 72.4 47 68.1
PGR142G1270 Punica granatum HOM05D003278 ORTHO05D003738 2.3e-11 72.0 49 67.3
TAR629G3133 Trochodendron aralioides HOM05D003278 ORTHO05D003738 2.3e-11 72.0 51 60.8
Atru.chr6.2630 Acer truncatum HOM05D003278 ORTHO05D003738 3.0e-11 71.6 47 68.1
arahy.Tifrunner.gnm1.ann1.IB6BQ9 Arachis hypogaea HOM05D003278 ORTHO05D003738 3.0e-11 71.6 59 57.6
CiPaw.04G002400 Carya illinoinensis HOM05D003278 ORTHO05D003738 3.0e-11 71.6 51 62.7
COL.COLO4_13334 Corchorus olitorius HOM05D003278 ORTHO05D003738 3.0e-11 71.6 51 60.8
MELO3C014796.2 Cucumis melo HOM05D003278 ORTHO05D003738 3.0e-11 71.6 46 67.4
Gorai.011G087400 Gossypium raimondii HOM05D003278 ORTHO05D003738 3.0e-11 71.6 56 60.7
Nn3g16328 Nelumbo nucifera HOM05D003278 ORTHO05D003738 3.0e-11 71.6 51 62.7
SGA_v2.0_scaffold44G16942 Striga asiatica HOM05D003278 ORTHO05D003738 3.0e-11 71.6 51 64.7
BcaB01g05313 Brassica carinata HOM05D003278 ORTHO05D003738 3.9e-11 71.2 49 61.2
TWI32G0304 Tripterygium wilfordii HOM05D003278 ORTHO05D003738 3.9e-11 71.2 49 67.3
Ca_08116_v3 Cicer arietinum L. HOM05D003278 ORTHO05D003738 5.1e-11 70.9 57 57.9
CsaV3_3G027640 Cucumis sativus L. HOM05D003278 ORTHO05D003738 5.1e-11 70.9 46 67.4
Glyma.16G050800 Glycine max HOM05D003278 ORTHO05D003738 5.1e-11 70.9 46 67.4
GSVIVG01033016001 Vitis vinifera HOM05D003278 ORTHO05D003738 5.1e-11 70.9 51 60.8
Migut.F00023 Erythranthe guttata HOM05D003278 ORTHO05D003738 6.7e-11 70.5 57 57.9
Gohir.D07G238100 Gossypium hirsutum HOM05D003278 ORTHO05D003738 6.7e-11 70.5 51 58.8
Gorai.001G273900 Gossypium raimondii HOM05D003278 ORTHO05D003738 6.7e-11 70.5 51 58.8
TPR.G5764 Trifolium pratense HOM05D003278 ORTHO05D003738 6.7e-11 70.5 61 59.0
BcaNung06032 Brassica carinata HOM05D003278 ORTHO05D003738 8.7e-11 70.1 49 61.2
MBI07_g37484_MAGBIO Magnolia biondii HOM05D003278 ORTHO05D003738 8.7e-11 70.1 51 60.8
Oeu013479.1 Olea europaea HOM05D003278 ORTHO05D003738 8.7e-11 70.1 51 64.7
Oeu039787.1 Olea europaea HOM05D003278 ORTHO05D003738 8.7e-11 70.1 51 64.7
Potri.001G323400 Populus trichocarpa HOM05D003278 ORTHO05D003738 8.7e-11 70.1 51 58.8
A02p02310 Brassica napus HOM05D003278 ORTHO05D003738 1.1e-10 69.7 49 61.2
C02p06530 Brassica napus HOM05D003278 ORTHO05D003738 1.1e-10 69.7 49 61.2
C03p07350 Brassica napus HOM05D003278 ORTHO05D003738 1.1e-10 69.7 49 59.2
BolC2t06600H Brassica oleracea HOM05D003278 ORTHO05D003738 1.1e-10 69.7 49 61.2
BolC3t13239H Brassica oleracea HOM05D003278 ORTHO05D003738 1.1e-10 69.7 49 59.2
BraA02t05202Z Brassica rapa HOM05D003278 ORTHO05D003738 1.1e-10 69.7 49 61.2
Eucgr.I01611 Eucalyptus grandis HOM05D003278 ORTHO05D003738 1.1e-10 69.7 49 65.3
TWI39G0190 Tripterygium wilfordii HOM05D003278 ORTHO05D003738 1.1e-10 69.7 51 60.8
TAR371G0395 Trochodendron aralioides HOM05D003278 ORTHO05D003738 1.1e-10 69.7 51 60.8
Aa31LG5G11160 Aethionema arabicum HOM05D003278 ORTHO05D003738 1.5e-10 69.3 51 60.8
Hma1.2p1_0421F.1_g150030 Hydrangea macrophylla HOM05D003278 ORTHO05D003738 1.5e-10 69.3 49 63.3
Medtr7g083560 Medicago truncatula HOM05D003278 ORTHO05D003738 1.5e-10 69.3 56 55.4
THA.LOC104825648 Tarenaya hassleriana HOM05D003278 ORTHO05D003738 1.5e-10 69.3 49 61.2
Aa31LG2G5730 Aethionema arabicum HOM05D003278 ORTHO05D003738 1.9e-10 68.9 49 59.2
CARHR199350 Cardamine hirsuta HOM05D003278 ORTHO05D003738 1.9e-10 68.9 49 63.3
AUR62041088 Chenopodium quinoa HOM05D003278 ORTHO05D003738 1.9e-10 68.9 45 68.9
Sabra17G0055200 Salix brachista HOM05D003278 ORTHO05D003738 1.9e-10 68.9 49 59.2
arahy.Tifrunner.gnm1.ann1.17PZW3 Arachis hypogaea HOM05D003278 ORTHO05D003738 2.5e-10 68.6 59 55.9
AUR62037848 Chenopodium quinoa HOM05D003278 ORTHO05D003738 2.5e-10 68.6 45 66.7
Cc07_g01150 Coffea canephora HOM05D003278 ORTHO05D003738 2.5e-10 68.6 49 65.3
Thhalv10004966m.g Eutrema salsugineum HOM05D003278 ORTHO05D003738 2.5e-10 68.6 49 59.2
Nitab4.5_0005161g0060 Nicotiana tabacum HOM05D003278 ORTHO05D003738 2.5e-10 68.6 49 65.3
arahy.Tifrunner.gnm1.ann1.SSHM9A Arachis hypogaea HOM05D003278 ORTHO05D003738 3.3e-10 68.2 44 68.2
BcaB07g30207 Brassica carinata HOM05D003278 ORTHO05D003738 3.3e-10 68.2 49 59.2
Haze_14926 Corylus avellana HOM05D003278 ORTHO05D003738 3.3e-10 68.2 51 58.8
Lalb_Chr22g0360061 Lupinus albus HOM05D003278 ORTHO05D003738 3.3e-10 68.2 46 63.0
Lalb_Chr22g0360071 Lupinus albus HOM05D003278 ORTHO05D003738 3.3e-10 68.2 46 63.0
SGA_v2.0_scaffold253G45157 Striga asiatica HOM05D003278 ORTHO05D003738 3.3e-10 68.2 51 60.8
CAN.G473.150 Capsicum annuum HOM05D003278 ORTHO05D003738 4.3e-10 67.8 51 60.8
CSS0029868 Camellia sinensis var. sinensis HOM05D003278 ORTHO05D003738 5.6e-10 67.4 53 58.5
Dinv23198 Davidia involucrata HOM05D003278 ORTHO05D003738 5.6e-10 67.4 49 59.2
Sp2g15970 Schrenkiella parvula HOM05D003278 ORTHO05D003738 5.6e-10 67.4 49 57.1
Solyc02g094440.4 Solanum lycopersicum HOM05D003278 ORTHO05D003738 5.6e-10 67.4 49 65.3
Sopen02g039100 Solanum pennellii HOM05D003278 ORTHO05D003738 5.6e-10 67.4 49 65.3
MSTRG.3051 Avicennia marina HOM05D003278 ORTHO05D003738 7.4e-10 67.0 49 63.3
Lsat_1_v5_gn_0_19201 Lactuca sativa HOM05D003278 ORTHO05D003738 9.6e-10 66.6 51 56.9
MBI11_g37078_MAGBIO Magnolia biondii HOM05D003278 ORTHO05D003738 9.6e-10 66.6 51 56.9
Nn4g22194 Nelumbo nucifera HOM05D003278 ORTHO05D003738 9.6e-10 66.6 46 63.0
C02p53380 Brassica napus HOM05D003278 ORTHO05D003738 1.3e-09 66.2 49 57.1
BolC2t11413H Brassica oleracea HOM05D003278 ORTHO05D003738 1.3e-09 66.2 49 57.1
BolC2t11414H Brassica oleracea HOM05D003278 ORTHO05D003738 1.3e-09 66.2 49 57.1
BolC2t11416H Brassica oleracea HOM05D003278 ORTHO05D003738 1.3e-09 66.2 49 57.1
Gohir.A09G000900 Gossypium hirsutum HOM05D003278 ORTHO05D003738 1.3e-09 66.2 51 58.8
Aqoxy5G03212 Aquilegia oxysepala HOM05D003278 ORTHO05D003738 1.6e-09 65.9 51 54.9
BcaC03g17393 Brassica carinata HOM05D003278 ORTHO05D003738 1.6e-09 65.9 47 59.6
BcaC03g17395 Brassica carinata HOM05D003278 ORTHO05D003738 1.6e-09 65.9 47 59.6
BolC2t11411H Brassica oleracea HOM05D003278 ORTHO05D003738 1.6e-09 65.9 47 59.6
Lalb_Chr24g0403221 Lupinus albus HOM05D003278 ORTHO05D003738 1.6e-09 65.9 44 63.6
Rhsim08G0040400 Rhododendron simsii HOM05D003278 ORTHO05D003738 1.6e-09 65.9 51 54.9
PGSC0003DMG400020198 Solanum tuberosum HOM05D003278 ORTHO05D003738 1.6e-09 65.9 49 63.3
Actinidia08897 Actinidia chinensis HOM05D003278 ORTHO05D003738 2.1e-09 65.5 51 52.9
Dinv25624 Davidia involucrata HOM05D003278 ORTHO05D003738 2.1e-09 65.5 51 58.8
Nitab4.5_0002172g0040 Nicotiana tabacum HOM05D003278 ORTHO05D003738 2.1e-09 65.5 49 63.3
vmacro18369 Vaccinium macrocarpon HOM05D003278 ORTHO05D003738 2.1e-09 65.5 51 54.9
Actinidia19562 Actinidia chinensis HOM05D003278 ORTHO05D003738 2.8e-09 65.1 51 56.9
Actinidia37737 Actinidia chinensis HOM05D003278 ORTHO05D003738 2.8e-09 65.1 51 56.9
Ah.03g136310 Amaranthus hybridus HOM05D003278 ORTHO05D003738 2.8e-09 65.1 45 66.7
Lsat_1_v5_gn_0_13201 Lactuca sativa HOM05D003278 ORTHO05D003738 2.8e-09 65.1 51 56.9
Ah.02g128960 Amaranthus hybridus HOM05D003278 ORTHO05D003738 3.7e-09 64.7 45 64.4
Dinv33296 Davidia involucrata HOM05D003278 ORTHO05D003738 3.7e-09 64.7 51 56.9
HanXRQChr17g0550841 Helianthus annuus HOM05D003278 ORTHO05D003738 3.7e-09 64.7 51 56.9
Nitab4.5_0000053g0010 Nicotiana tabacum HOM05D003278 ORTHO05D003738 3.7e-09 64.7 49 63.3
Nitab4.5_0000519g0210 Nicotiana tabacum HOM05D003278 ORTHO05D003738 3.7e-09 64.7 49 63.3
Gohir.D09G000700 Gossypium hirsutum HOM05D003278 ORTHO05D003738 4.8e-09 64.3 49 59.2
Gorai.006G000600 Gossypium raimondii HOM05D003278 ORTHO05D003738 4.8e-09 64.3 49 59.2
ECA246G3103 Erigeron canadensis HOM05D003278 ORTHO05D003738 6.2e-09 63.9 51 56.9
HanXRQChr15g0475771 Helianthus annuus HOM05D003278 ORTHO05D003738 6.2e-09 63.9 56 53.6
Lj9C484T7 Lonicera japonica HOM05D003278 ORTHO05D003738 6.2e-09 63.9 53 54.7
ATR0582G314 Amborella trichopoda HOM05D003278 ORTHO05D003738 1.1e-08 63.2 51 58.8
Aqoxy3G01757 Aquilegia oxysepala HOM05D003278 ORTHO05D003738 1.4e-08 62.8 45 64.4
Cpa.g.sc4.116 Carica papaya HOM05D003278 ORTHO05D003738 1.4e-08 62.8 47 55.3
SalBow4G1316 Salvia bowleyana HOM05D003278 ORTHO05D003738 1.4e-08 62.8 49 55.1
EL10Ac6g13378 Beta vulgaris HOM05D003278 ORTHO05D003738 1.8e-08 62.4 45 62.2
PSO478G3999 Papaver somniferum HOM05D003278 ORTHO05D003738 1.8e-08 62.4 51 51.0
PSO017G3850 Papaver somniferum HOM05D003278 ORTHO05D003738 3.1e-08 61.6 51 51.0
Hund04242 Selenicereus undatus HOM05D003278 ORTHO05D003738 3.1e-08 61.6 45 60.0
HPP92_020102 Vanilla planifolia HOM05D003278 ORTHO05D003738 3.1e-08 61.6 58 51.7
A02p34810 Brassica napus HOM05D003278 ORTHO05D003738 4.0e-08 61.2 49 53.1
BraA02t08488Z Brassica rapa HOM05D003278 ORTHO05D003738 4.0e-08 61.2 49 53.1
Lj7C615G2 Lonicera japonica HOM05D003278 ORTHO05D003738 4.0e-08 61.2 56 53.6
Sc07g0003660 Simmondsia chinensis HOM05D003278 ORTHO05D003738 4.0e-08 61.2 49 55.1
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 5.3e-08 60.8 46 52.2
SGA_v2.0_scaffold74G24703 Striga asiatica HOM05D003278 ORTHO05D003738 5.3e-08 60.8 53 49.1
MSTRG.9346 Avicennia marina HOM05D003278 ORTHO05D003738 9.0e-08 60.1 53 49.1
AUR62034786 Chenopodium quinoa HOM05D003278 ORTHO05D003738 1.2e-07 59.7 47 53.2
Lalb_Chr06g0173751 Lupinus albus HOM05D003278 ORTHO05D003738 1.2e-07 59.7 55 52.7
Migut.D01229 Erythranthe guttata HOM05D003278 ORTHO05D003738 2.0e-07 58.9 56 46.4
PSO017G2806 Papaver somniferum HOM05D003278 ORTHO05D003738 2.0e-07 58.9 47 53.2
PSO478G4017 Papaver somniferum HOM05D003278 ORTHO05D003738 2.0e-07 58.9 47 53.2
Peaxi162Scf00420g00076 Petunia axillaris HOM05D003278 ORTHO05D003738 2.0e-07 58.9 49 57.1
Nitab4.5_0007858g0040 Nicotiana tabacum HOM05D003278 ORTHO05D003738 2.6e-07 58.5 49 53.1
Nitab4.5_0012236g0010 Nicotiana tabacum HOM05D003278 ORTHO05D003738 2.6e-07 58.5 49 53.1
Peaxi162Scf00171g01123 Petunia axillaris HOM05D003278 ORTHO05D003738 2.6e-07 58.5 49 53.1
AUR62029530 Chenopodium quinoa HOM05D003278 ORTHO05D003738 3.4e-07 58.2 47 53.2
Oeu030645.1 Olea europaea HOM05D003278 ORTHO05D003738 3.4e-07 58.2 53 47.2
vmacro16744 Vaccinium macrocarpon HOM05D003278 ORTHO05D003738 3.4e-07 58.2 51 49.0
CDE06G2413 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 4.5e-07 57.8 46 50.0
unitig_27.g25341 Utricularia gibba HOM05D000127 ORTHO05D000243 4.5e-07 57.8 50 50.0
DCAR_021812 Daucus carota HOM05D003278 ORTHO05D003738 5.8e-07 57.4 51 47.1
SalBow1G0445 Salvia bowleyana HOM05D003278 ORTHO05D003738 5.8e-07 57.4 49 46.9
Rhsim12G0179700 Rhododendron simsii HOM05D003278 ORTHO05D003738 7.6e-07 57.0 51 51.0
Oeu022287.1 Olea europaea HOM05D003278 ORTHO05D003738 2.9e-06 55.1 53 45.3
Hund02482 Selenicereus undatus HOM05D003278 ORTHO05D003738 6.4e-06 53.9 47 53.2
AagrBONN_evm.TU.Sc2ySwM_368.180 Anthoceros agrestis HOM05D003278 ORTHO05D003738 8.4e-06 53.5 54 48.1
CAN.G637.57 Capsicum annuum HOM05D003278 ORTHO05D003738 8.4e-06 53.5 47 48.9


User provided reference genes

Program Settings