Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 5.7e-95 350.9 177 100.0
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 5.2e-88 327.8 177 93.8
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 5.7e-87 324.3 178 93.8
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 5.7e-87 324.3 178 93.8
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 9.8e-87 323.6 177 93.2
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 7.6e-55 217.6 119 93.3
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 8.4e-46 187.6 174 59.8
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 4.6e-44 181.8 173 64.7
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 8.7e-43 177.6 167 60.5
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 3.1e-32 142.5 164 53.0
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 3.2e-29 132.5 163 47.2
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 4.2e-29 132.1 175 46.9
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 5.4e-29 131.7 184 47.3
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 1.2e-28 130.6 186 46.2
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 2.7e-28 129.4 179 45.3
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 6.0e-28 128.3 184 46.2
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 3.9e-27 125.6 196 48.0
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 1.5e-26 123.6 191 45.5
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 1.9e-26 123.2 193 43.5
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 9.6e-26 120.9 143 49.0
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.8e-25 119.4 197 41.6
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 8.1e-25 117.9 167 46.7
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 1.1e-24 117.5 192 43.2
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.1e-24 117.5 191 42.9
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.4e-24 117.1 191 42.4
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 2.4e-24 116.3 173 42.2
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 2.4e-24 116.3 155 43.2
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 4.0e-24 115.5 183 45.4
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 6.9e-24 114.8 169 46.7
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.0e-23 113.2 179 41.9
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 3.4e-23 112.5 152 44.7
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 3.4e-23 112.5 180 42.8
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 4.5e-23 112.1 174 42.0
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 4.5e-23 112.1 155 45.2
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 1.0e-22 110.9 185 43.2
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.0e-22 110.9 170 41.8
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.8e-22 109.0 163 42.3
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.1e-21 107.5 175 39.4
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 4.2e-21 105.5 142 45.8
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 4.2e-21 105.5 184 43.5
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 4.2e-21 105.5 176 43.8
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 9.3e-21 104.4 173 40.5
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.7e-20 102.8 176 44.3
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 4.6e-20 102.1 162 43.8
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 6.7e-19 98.2 177 42.4
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 8.7e-19 97.8 177 42.4
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 1.5e-18 97.1 172 41.3
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 2.1e-17 93.2 193 34.2
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 2.8e-17 92.8 174 38.5
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 2.8e-17 92.8 193 34.7
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 1.8e-16 90.1 142 43.7
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 6.9e-16 88.2 187 36.9
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 9.0e-16 87.8 187 38.0
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 1.2e-15 87.4 162 38.3
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 5.8e-15 85.1 155 39.4
Cpa.g.sc129.80 Carica papaya HOM05D005432 ORTHO05D004599 7.6e-15 84.7 161 37.9
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 7.6e-15 84.7 195 32.8
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.0e-14 84.3 203 34.0
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 1.7e-14 83.6 194 37.6
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.7e-14 83.6 196 33.2
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 2.2e-14 83.2 207 34.8
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 2.9e-14 82.8 164 35.4
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 2.9e-14 82.8 154 39.0
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 3.8e-14 82.4 168 38.1
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 3.8e-14 82.4 160 39.4
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 6.5e-14 81.6 185 33.5
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 6.5e-14 81.6 198 32.3
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 8.4e-14 81.3 176 37.5
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 1.4e-13 80.5 164 37.8
AUR62007532 Chenopodium quinoa HOM05D022777 ORTHO05D004599 2.5e-13 79.7 162 42.0
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 3.2e-13 79.3 171 34.5
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 4.2e-13 79.0 163 39.3
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 5.5e-13 78.6 176 34.1
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 7.2e-13 78.2 161 39.8
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.2e-12 77.4 112 40.2
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.1e-12 76.6 109 37.6
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 3.5e-12 75.9 159 34.0
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 4.6e-12 75.5 165 35.8
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 4.6e-12 75.5 203 32.5
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 6.1e-12 75.1 192 33.9
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 7.9e-12 74.7 77 50.6
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 7.9e-12 74.7 76 55.3
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 7.9e-12 74.7 185 35.1
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 1.3e-11 73.9 176 36.4
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.8e-11 73.6 151 37.1
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 1.8e-11 73.6 75 56.0
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 2.3e-11 73.2 114 43.0
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 5.1e-11 72.0 163 34.4
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 8.7e-11 71.2 86 46.5
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 1.5e-10 70.5 158 37.3
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 2.5e-10 69.7 65 53.8
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 3.3e-10 69.3 153 31.4
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 3.3e-10 69.3 153 31.4
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 4.3e-10 68.9 166 30.7
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 5.7e-10 68.6 70 51.4
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 7.4e-10 68.2 154 37.0
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 7.4e-10 68.2 174 32.8
AUR62004024 Chenopodium quinoa HOM05D022777 ORTHO05D004599 9.7e-10 67.8 141 39.0
Psat4g081120 Pisum sativum HOM05D005432 ORTHO05D004599 9.7e-10 67.8 78 50.0
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 1.3e-09 67.4 97 42.3
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 1.6e-09 67.0 153 30.7
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 1.6e-09 67.0 153 30.7
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.2e-09 66.6 172 32.0
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 2.2e-09 66.6 155 31.0
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 2.8e-09 66.2 201 32.3
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 4.8e-09 65.5 56 55.4
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 4.8e-09 65.5 162 32.7
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 4.8e-09 65.5 89 47.2
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 6.3e-09 65.1 180 31.1
Lsat_1_v5_gn_4_160241 Lactuca sativa HOM05D005432 ORTHO05D004599 6.3e-09 65.1 78 46.2
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 8.2e-09 64.7 168 32.7
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 1.1e-08 64.3 72 50.0
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.1e-08 64.3 180 27.8
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 1.1e-08 64.3 64 51.6
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.4e-08 63.9 156 34.6
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.4e-08 63.9 170 32.4
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 2.4e-08 63.2 83 42.2
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 2.4e-08 63.2 167 31.1
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 3.1e-08 62.8 148 31.1
Eucgr.H02319 Eucalyptus grandis HOM05D005432 ORTHO05D004599 4.1e-08 62.4 139 34.5
Psat4g081760 Pisum sativum HOM05D005432 ORTHO05D004599 4.1e-08 62.4 77 46.8
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 5.3e-08 62.0 153 28.8
TPR.G9336 Trifolium pratense HOM05D005432 ORTHO05D004599 5.3e-08 62.0 69 49.3
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 6.9e-08 61.6 58 50.0
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 9.0e-08 61.2 66 47.0
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 9.0e-08 61.2 55 50.9
ECA232G3481 Erigeron canadensis HOM05D005432 ORTHO05D004599 1.2e-07 60.8 175 29.7
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 1.5e-07 60.5 70 48.6
Lsat_1_v5_gn_4_160281 Lactuca sativa HOM05D005432 ORTHO05D004599 2.0e-07 60.1 140 35.7
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 2.0e-07 60.1 188 29.3
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 2.6e-07 59.7 72 45.8
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 2.6e-07 59.7 72 45.8
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 3.4e-07 59.3 55 49.1
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 3.4e-07 59.3 80 43.8
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 4.5e-07 58.9 55 49.1
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 4.5e-07 58.9 55 49.1
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 4.5e-07 58.9 72 45.8
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 4.5e-07 58.9 72 45.8
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 4.5e-07 58.9 72 45.8
Psat2g172120 Pisum sativum HOM05D005432 ORTHO05D004599 4.5e-07 58.9 70 51.4
Ah.02g125350 Amaranthus hybridus HOM05D022777 ORTHO05D004599 5.9e-07 58.5 163 32.5
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 5.9e-07 58.5 50 50.0
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 5.9e-07 58.5 50 50.0
PSO541G2677 Papaver somniferum HOM05D005432 ORTHO05D004599 7.7e-07 58.2 97 41.2
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 1.0e-06 57.8 49 51.0
AT4G37710 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 1.7e-06 57.0 73 41.1
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 1.7e-06 57.0 72 45.8
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 1.7e-06 57.0 225 27.6
CAN.G1830.2 Capsicum annuum HOM05D005432 ORTHO05D004599 2.2e-06 56.6 55 47.3
CARHR246100 Cardamine hirsuta HOM05D009364 ORTHO05D004599 2.2e-06 56.6 75 41.3
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 2.2e-06 56.6 70 42.9
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 2.9e-06 56.2 72 43.1
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 3.8e-06 55.8 61 50.8
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 3.8e-06 55.8 89 37.1
BcaC06g33374 Brassica carinata HOM05D009364 ORTHO05D004599 6.5e-06 55.1 49 49.0
C07p62590 Brassica napus HOM05D009364 ORTHO05D004599 6.5e-06 55.1 49 49.0
BolC7t46674H Brassica oleracea HOM05D009364 ORTHO05D004599 6.5e-06 55.1 49 49.0
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 6.5e-06 55.1 74 36.5
PGR004G1176 Punica granatum HOM05D005432 ORTHO05D004599 8.5e-06 54.7 154 32.5


User provided reference genes

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